VIGGS:GBrowse

Vigan.02G094900.01

Basic Information:

Name:	Vigan.02G094900.01 Multiple alignment Variant Information
Position:	Chr02:7565754..7567814 (+ strand)
Length:	2061

Functional Information:

Description:	Similar to 2-on-2 hemoglobin. [Q6QDC2, Glycine max]
GO:	Biological Process: oxygen transport (GO:0015671)
	Molecular Function: iron ion binding (GO:0005506)
	Molecular Function: oxygen binding (GO:0019825)
	Molecular Function: heme binding (GO:0020037)
InterPro:	Globin, truncated bacterial-like (IPR001486)
	Globin-like (IPR009050)
	Globin, structural domain (IPR012292)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.25,0.82,1.01,1.67,277.74,4.37,38.28,3.72

Automatic updates:

Name:	NM_001250415 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max 2-on-2 hemoglobin (GLB3), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr02:7565754..7565835 (+ strand)
Length:	82
Type:	five_prime_UTR

Position:	Chr02:7565836..7565972 (+ strand)
Length:	137
Type:	CDS

Position:	Chr02:7566057..7566187 (+ strand)
Length:	131
Type:	CDS

Position:	Chr02:7566745..7566889 (+ strand)
Length:	145
Type:	CDS

Position:	Chr02:7566959..7567064 (+ strand)
Length:	106
Type:	CDS

Position:	Chr02:7567065..7567814 (+ strand)
Length:	750
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.02G094900.01 class=Sequence position=Chr02:7565754..7567814 (+ strand)
CAGGGCCACA GGTTCTGATT CTGCGTGTGG GAAGAACAAC GCCTGAAAAG TTTGTTGAGA GAGAGAGATA ACTGCTTTCG
CGATGCAGAG TCTGCAGCAG AAGGCCTCTG AATGGAGTGG AGTTTCCACA GATGATGCTT TTGCTATCGA CGACGGCGAT
TTGTTTCACA CTCTTGGCCT CCAAACCTTC GTTACACTCT CTACCAATTT CTACAACAGG TCCTACCTTT TTGTCTTTTT
TTTGGTTTAA ATTGTTGATG ATTGAGTTCA GTGGTTTTGA TTTGGGGATT GTTCGATGCT TAGGGTATAT GATGATGATC
AAGACTGGTT TCGTTCAATA TTTGGGAATT CAGACAAGGA AACGGCAATT CAGAACCAGT ACGAATTCCT CGTCCAGAGG
ATGGGAGGTC CTCCTCTCTA TTCTCAAAGA AGAGGTTCAT TTTCTTCCCC TGTTTCTTCA TCAAATATAT ATATATATAT
ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATTT ATTTATATTT CCAGAAGTAT
ATAATTTCTG TACTTAGTCT TGTAGAGTTT TGGAGTCGTT TTCACATTAA AGAAATTGAA GCATTCCACA TTAATTTCTA
CAAGTACACA CTGAAAGTGA AAATTGACAT ATAATTTGAA ATAAAATACT TTTAAATGTA TTCCACATAA AATTAAATTT
AACTCACTTG AAATTAATGA TGAATTATTT TTACGTCTGA ATCTACTTTA TAGTTGAAGA ACATTGTTAA CGAAACAGCT
TCCTAATTTA TGACATAGTA GGAAAAACAT TGATATGATT ATCAGCTACC TTCTGTAAAG GATAAAAAAT CTTGAGGAAA
AAAAAATAAT GAAATTCAGG ACTATATAAT TTGTTCAATG AAAAAAGTAG TGGTTTGTTA TAGAATACCC TGAGAAGGTG
CAGTTTAAAC CTCTTGATAT ATAAATTGTA GGGCACCCTG CTCTAATTGC TCGACATCGA CCATTTCCTG TGACACATGA
AGCTGCTGAG AGGTGGCTAC ATCATATGGG ACAAGCATTG GACAGTACCT CAGCTATAGA TGATGATTCA AAGATCAAAC
TCACGAACTT TTTCAGGTTT ATTTTCTTTC CCACTGCCTT TTCACTTAAC AATAATTGAT GTCCATAACA ACATTACTTT
TTCAGGCACA CTGCATATTT CCTTGTGGCT GGAGTTGAGC GAAAGGATCA ACACCATCAC ACACCATGCA AGGATGCTGC
CCTGAAGCAA CACCCATGTA AAAACTTCTA GTATTTTCTT TGTACCATAT AGAGAAGGTA TCATATCAGA TGTCAATTTT
ACTGTTGACA TAAAAACTTT CAGATCATAT ATAAGGTTGA ATTTTTTTTA TATATATGCA CATGAATATT TCCTTGTGAT
GAAGTTGGGC TAAAGGATCA AAAAGCATCA CACAACATGT AAGGATACTG CCCTGAAATG TAAAAACTTA GTATTGTGTT
TGCTTTTGTG CCATATAGAG AATAAGGTTT CATATAAAAC TTTTAGTTTG TGTTTGCTTT TGTGTGTTTG GCTGAAGAAT
GCCGGCGAAC TGTGGGATAC TTTTCTATAA AATTTACAGG AGGGAAATGA AATAATCTCT ATGCCACCTA CAAAAAATTA
AAGTCACCTT ACGTTAAAAA AGAAGAAATG TTGTGTGATG CAAATACTTT ACTCCTTTAC TCCCTCTACC CTTTACTCCT
TCCATGTGTC TCTCTTCAAC AATGTGCCTC CTCCTTCACC ATGTCTCCCT ATGCATTACT TGTTGAGGCA AATCAGAAAT
GTTGTGATGC AAGCCTAATA TTATGATTCT AAGCAAAGAA GAAGACATTG AAAGTGGGTA CAGGCATCTT TGATTCATCA
TTCCGAAAGT ATTTTTTTCC TATTACCAAG ATTTGTCCAA TGCATGTATG AACATCTACC CCAAATTGGT CAAAAAGAGG
AGTATGACCC TTGAGTTGCA TATGGAAGAA GTAAAAACAG GAAAAAAACT TTCAAAATGG G

[show][hide][copy]TRANSCRIPT

>Vigan.02G094900.01
CAGGGCCACA GGTTCTGATT CTGCGTGTGG GAAGAACAAC GCCTGAAAAG TTTGTTGAGA GAGAGAGATA ACTGCTTTCG
CGATGCAGAG TCTGCAGCAG AAGGCCTCTG AATGGAGTGG AGTTTCCACA GATGATGCTT TTGCTATCGA CGACGGCGAT
TTGTTTCACA CTCTTGGCCT CCAAACCTTC GTTACACTCT CTACCAATTT CTACAACAGG GTATATGATG ATGATCAAGA
CTGGTTTCGT TCAATATTTG GGAATTCAGA CAAGGAAACG GCAATTCAGA ACCAGTACGA ATTCCTCGTC CAGAGGATGG
GAGGTCCTCC TCTCTATTCT CAAAGAAGAG GGCACCCTGC TCTAATTGCT CGACATCGAC CATTTCCTGT GACACATGAA
GCTGCTGAGA GGTGGCTACA TCATATGGGA CAAGCATTGG ACAGTACCTC AGCTATAGAT GATGATTCAA AGATCAAACT
CACGAACTTT TTCAGGCACA CTGCATATTT CCTTGTGGCT GGAGTTGAGC GAAAGGATCA ACACCATCAC ACACCATGCA
AGGATGCTGC CCTGAAGCAA CACCCATGTA AAAACTTCTA GTATTTTCTT TGTACCATAT AGAGAAGGTA TCATATCAGA
TGTCAATTTT ACTGTTGACA TAAAAACTTT CAGATCATAT ATAAGGTTGA ATTTTTTTTA TATATATGCA CATGAATATT
TCCTTGTGAT GAAGTTGGGC TAAAGGATCA AAAAGCATCA CACAACATGT AAGGATACTG CCCTGAAATG TAAAAACTTA
GTATTGTGTT TGCTTTTGTG CCATATAGAG AATAAGGTTT CATATAAAAC TTTTAGTTTG TGTTTGCTTT TGTGTGTTTG
GCTGAAGAAT GCCGGCGAAC TGTGGGATAC TTTTCTATAA AATTTACAGG AGGGAAATGA AATAATCTCT ATGCCACCTA
CAAAAAATTA AAGTCACCTT ACGTTAAAAA AGAAGAAATG TTGTGTGATG CAAATACTTT ACTCCTTTAC TCCCTCTACC
CTTTACTCCT TCCATGTGTC TCTCTTCAAC AATGTGCCTC CTCCTTCACC ATGTCTCCCT ATGCATTACT TGTTGAGGCA
AATCAGAAAT GTTGTGATGC AAGCCTAATA TTATGATTCT AAGCAAAGAA GAAGACATTG AAAGTGGGTA CAGGCATCTT
TGATTCATCA TTCCGAAAGT ATTTTTTTCC TATTACCAAG ATTTGTCCAA TGCATGTATG AACATCTACC CCAAATTGGT
CAAAAAGAGG AGTATGACCC TTGAGTTGCA TATGGAAGAA GTAAAAACAG GAAAAAAACT TTCAAAATGG G

[show][hide][copy]CDS

>Vigan.02G094900.01
ATGCAGAGTC TGCAGCAGAA GGCCTCTGAA TGGAGTGGAG TTTCCACAGA TGATGCTTTT GCTATCGACG ACGGCGATTT
GTTTCACACT CTTGGCCTCC AAACCTTCGT TACACTCTCT ACCAATTTCT ACAACAGGGT ATATGATGAT GATCAAGACT
GGTTTCGTTC AATATTTGGG AATTCAGACA AGGAAACGGC AATTCAGAAC CAGTACGAAT TCCTCGTCCA GAGGATGGGA
GGTCCTCCTC TCTATTCTCA AAGAAGAGGG CACCCTGCTC TAATTGCTCG ACATCGACCA TTTCCTGTGA CACATGAAGC
TGCTGAGAGG TGGCTACATC ATATGGGACA AGCATTGGAC AGTACCTCAG CTATAGATGA TGATTCAAAG ATCAAACTCA
CGAACTTTTT CAGGCACACT GCATATTTCC TTGTGGCTGG AGTTGAGCGA AAGGATCAAC ACCATCACAC ACCATGCAAG
GATGCTGCCC TGAAGCAACA CCCATGTAAA AACTTCTAG

[show][hide][copy]PROTEIN

>Vigan.02G094900.01
MQSLQQKASE WSGVSTDDAF AIDDGDLFHT LGLQTFVTLS TNFYNRVYDD DQDWFRSIFG NSDKETAIQN QYEFLVQRMG
GPPLYSQRRG HPALIARHRP FPVTHEAAER WLHHMGQALD STSAIDDDSK IKLTNFFRHT AYFLVAGVER KDQHHHTPCK
DAALKQHPCK NF*