GBrowse Details

Vigan.02G087200.01

Basic Information:
Name: Vigan.02G087200.01
Multiple alignment
Variant Information
Position: Chr02:6862150..6865996 (+ strand)
Length: 3847
Functional Information:
Description: Similar to Uncharacterized protein. [I1K908, Glycine max]
GO: Biological Process: photosynthesis (GO:0015979)
Cellular Component: photosystem II (GO:0009523)
Cellular Component: photosystem II oxygen evolving complex (GO:0009654)
Cellular Component: extrinsic to membrane (GO:0019898)
Molecular Function: calcium ion binding (GO:0005509)
InterPro: Photosystem II PsbP, oxygen evolving complex (IPR002683)
Mog1/PsbP, alpha/beta/alpha sandwich (IPR016123)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.43,4.01,14.34,19.00,3.47,3.71,2.31,6.74
Arabidopsis thaliana homolog: AT5G11450.1
Automatic updates:
Name: NM_001255651 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max psbP domain-containing protein 5, chloroplastic-like (LOC100776365), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:6862150..6862259 (+ strand)
Length: 110
Type: five_prime_UTR
Position: Chr02:6862260..6862339 (+ strand)
Length: 80
Type: CDS
Position: Chr02:6862427..6862590 (+ strand)
Length: 164
Type: CDS
Position: Chr02:6862729..6862837 (+ strand)
Length: 109
Type: CDS
Position: Chr02:6863281..6863330 (+ strand)
Length: 50
Type: CDS
Position: Chr02:6863563..6863630 (+ strand)
Length: 68
Type: CDS
Position: Chr02:6863702..6863800 (+ strand)
Length: 99
Type: CDS
Position: Chr02:6864158..6864217 (+ strand)
Length: 60
Type: CDS
Position: Chr02:6864412..6864471 (+ strand)
Length: 60
Type: CDS
Position: Chr02:6864560..6864614 (+ strand)
Length: 55
Type: CDS
Position: Chr02:6864972..6865021 (+ strand)
Length: 50
Type: CDS
Position: Chr02:6865679..6865777 (+ strand)
Length: 99
Type: CDS
Position: Chr02:6865778..6865996 (+ strand)
Length: 219
Type: three_prime_UTR

>Vigan.02G087200.01 class=Sequence position=Chr02:6862150..6865996 (+ strand)
CCGTGTGTTG CTAAGAACAT GTCAGAAGAA AAAAGTTGTA ATAAAAGGGA AGTGTTGAAA GTGAGATAAT GTTACAGTGT
GGTGGTGGAT GACACAACTG AGAGCTACCA ATGGTTTTAC CTTCTTCTTC TCTCTCCCTT TCCTTCTTCT TCCCCACTTC
TACACTTCTT CCTAATAACC TTATCTTCAG GTTCTTCTGC ATAACCCTTT TCAATAATTT TAGTTTATGT TCATATTTGC
TCTCTTTTTT CTAAACCCAT TTGCTTTTGT TAATCAGAAA CAACAACAGG GCTATCTTTA ACCCACACAA TTTCCCATTA
TCAAAGGAAA GACTACGTTT TTCATGTTGT GCTCTAAAAC CCACTTCGCA AAACAGGGTT TTTAGAAGGG ATTTGGTGTT
GTTAGGCTTG ACCTCGGTTT CTCTAAGATG GCCACTTTCA GGTACCTCTC TTGCATTCTC TCTGAGAATT TTCTGCTTGA
TGAGATTATG AGAACTAGTG TGATTTCATT TGACATGTGT TTTATTATGT GATGCAATTG AGACACATTT GCTTTATCAT
TGTTCTTTAT GTCTTGCAGT GGCTCTTGCT GAAGAAGAGC CCACAATGGC TTCGTTTTTA GATGAAATAA ACGCCTATTC
TTATCTGTAC CCTGTTGAGT CGCCTTCCAA CAATATTTCC CTCAAATGGT ATGCCAAGTA AATGCATGTT ATGAGAATGC
TAGCAACACT CTTTCCAACA TACTACTATT CACTACAATT TATTAGAATT AGAAATCACA AAAAAATGCG AGTCTTACAT
ATTATTTAGG GAATCTTATG ATTTTATACT TTTCTGTAAA AGTGTGTTAG AAGTTGTGTT AGAAAATATG TTACAAGCAT
TTCTCATATT TTATATATAT CTTTATTTAT AGTAAGCAAA ATGATAAGGG TAGTTTCAAC TTCCAACTTT ATCTAATGTT
TTTTACTACA TTTAATAATG TCAGTAAGAC ATTAATTTGT TCAGTGAACT TGATCCGATA GAACTTAGTG CTAGTGCATC
TAAGATTCCT ATATTTGGCT TACATCTCCA CTAGTTGTCT GGAATTTTTC CTTAATCATT ATATAAGCTA ACTCTTTCCA
TATATTTAAA GGGTAGAATC CCGAAAGCCA GAGCGATATT CATCAGCTGC ACCACTTTCT CGTAAGTTTC TCTTTTCCTT
TGCTAGGCAA AAATCTCTCA TCAAATAATT CAGGATAGAG GTCATGTTTC ATTGTGAGCT TGTTACAAAA CAACTGCCAC
CAGCTCTGTG ATTAAAGTGT TTGAATGGTA GAAATTTTCA CTAGTGAATA TTGATCTTGT GCATAAAGAT ACTGGATGCT
TGCTTCATAA TTTTCCTTTT ATGGATAAAA ATTTCTGTGT AAATTTCATG TAGCTGATGC ACGCCTGCGC ATTGTGTCCG
AGCGTGTAGA CTTTATTGAT AATGTCATCA TTTCTGTCAC GGTATTCTCT CAACCTAATA CTTGTTTGAA GGAGTTTTAG
TTATCTATTC ATGTTTTTTA TACTAAATTC AGATAGGTCC ACCAAATGCA AGCTATATAA AATCAAAGGA TAAGAGTACA
TGGACTGCAA AAGATGTTGC TGATTCAGTG TTAGCTGACA GATCTTCACT GGTAACTGGC CACTCCTTTG TTAATAAAGG
CTTTTGTGTT AACACTATTC TTATTAGAAA CAAAAAATTG TAATCTTCTT GAATAATTTC AAACCACAAG ATGCCACTAC
TAATGTTCTG AGTATTGATT AAAATTCAGA GATTTATCAT TCACCAGTTA ATAGGGATTA TCCCTACCTG GAACTCAGGG
AGTTGTATAT GGTCATAAAT GTTGGATGGT ATGTAAAACA CTTTGTTATA AATTAAATTA ATCTTCTCTG TTTTGAGGAT
TTTCACTGAC TACAAACGAG AAATGGTGCT CCAAGATGTT AAAATACAGT TGACCTCTGC TGCATATTCT GATAACAAGA
TTTTGCAGCG AGTTACGTCA ACTCAGCGTT TAGAAGAGAG TTCGGTTCTC AATACCCATT CTAGTGAAGT AAGCCTCATA
AAACAATCTT TATTTCTTTG TTTCCAATAT TTGATCTCTC TCTCTCCCTA TATATATATA TATATATATA TATATATATA
TATATATATA TATATATATA TATATATATA TAGGGTATAT ATATATATAT ATATATATTA GGTTGAAGTT TATGCATAGT
GAGCTTATTT GCTTCTCCTC AGATTGATGG TGAGAAGTAC TGGTATTATG AATACCTTGT TCGTAAAGCA CCTTTGAGAC
TAGTAAGTAC TGCCTTTTGA TAGAAGTTTT TTTTCATGGA AAGATGTGGT ATGTGTAATG ACTTTTGGTT TATAAACCCT
GCTTGTACAG ACTGATGAAT CAAACACTTA CCGGCATTAT CTTGCTTCAA CAGCTGAAAG AGATGGTATA TCTTCTATTT
TATTTCATTG GTATAGATTA TTTCTAACTT GGTGTATCTA ATATGAGACT GTCCTCTGTA TATGCATGCA AAGTGCTTCG
AAGCTACTTT TTAAATGATT TTGTTCTATT TTCTATTTCT CATTCAATTA GAGCCACACT TGTTTCGGCT TACCATGGAG
GCTAAAAACA AAACAAGATA AAATGAAATA TCTCTTTATT ATATTTTTAT GGGATTACCA ATTAGCTAAT TCACACGCCG
TTTTTTTTCT TTGTTCTCTT TTTAAGGTTT TCAAGTTATA TCTTTCTTTT GGTGTTGCAT TTCAAAACTT CTCTTCTTTT
TCTACTAAGC ACTTGCTTGC AGGTTATTTG TACTCTATCA GTGCTTCAAC CATCAGCCCA CGGTGGGAAA AGGTACTCTC
TCTCTCTCTC TCTCTTACTC TCTTTTGTTG TCTTGGTGTA TGTTTATGTT CATTGATTCA AATGATATAT GAGAACCTGT
AGAAGCAGTA TAAAAACAGA ATTAGATTCA ACATTTTATA AAAGCAGTAT AAAATGATCT TTTCTTGCAC TGCCTCAGTC
AAATGATCAA GCATGTCTAA TTCTTTAAGT TGACAATGGT CTGACTGAGA ACATGTCAGA CTTTTTCCTT TTCATCCATC
AAAGGTGATT ATACAACCTG AGAATTAATG TCAAGGTTTT CTTTTTAGAA AAAAAGAAAC AGTATGGTAT GTTTAAAAGA
GGTAAAAAGA ATGCAAATGG TTTGATTTTA CCTAAATGCA TGCATATGAA ATCTTCTGTT CCATAATTTT CTGGTAGTAA
TTAAACTTAA AGTTCCTTTT TTATTAGCTT TCACCTTTTG AAGACCAGTC TCTGATTTCT AATTTACCAG AGGAATTCTT
AAAGAGATCA GAACCAAGTT GTGATTTGGG CAAGAAGTTT GATACATGTT ACTTTTATGA CTCATTTTAT TTGTGGAGTA
GTTTATTCAA AATGGCCCAA AGTATTACTA CAATTCTTAA AACAATTTAT CTTTTGTGTA GCTCTAACCA TAGAATATAT
TTAATGCAGC TGGGGCCTTT CCTTGAAAAG GCAGTGGGTT CATTTCGTCT CCTTAGTCCA ACGGAAAATT ATGTTCCTCC
CTACAAAGAT CCCTGGAGAT TTTGGTGAAA ACTCCTTTTA TTTTATCGTA TTCATGTGAT TTTTTAGGCA TGAAATTTAT
GTTTCATTTA ATTGTTGGTC CAAAAAGGCA AATTGAAATA GATTCTCTGA AAGAGATGAG CAGAACATGA GGCCTTCTAT
TTCTGTTTTT TCTATTCTTT TTTATCATTC CTAAATGTAC TTTAACATCG TTTATTTAGC AATCCAATTT AGATAATAAA
ACAGAGG

>Vigan.02G087200.01
CCGTGTGTTG CTAAGAACAT GTCAGAAGAA AAAAGTTGTA ATAAAAGGGA AGTGTTGAAA GTGAGATAAT GTTACAGTGT
GGTGGTGGAT GACACAACTG AGAGCTACCA ATGGTTTTAC CTTCTTCTTC TCTCTCCCTT TCCTTCTTCT TCCCCACTTC
TACACTTCTT CCTAATAACC TTATCTTCAG AAACAACAAC AGGGCTATCT TTAACCCACA CAATTTCCCA TTATCAAAGG
AAAGACTACG TTTTTCATGT TGTGCTCTAA AACCCACTTC GCAAAACAGG GTTTTTAGAA GGGATTTGGT GTTGTTAGGC
TTGACCTCGG TTTCTCTAAG ATGGCCACTT TCAGTGGCTC TTGCTGAAGA AGAGCCCACA ATGGCTTCGT TTTTAGATGA
AATAAACGCC TATTCTTATC TGTACCCTGT TGAGTCGCCT TCCAACAATA TTTCCCTCAA ATGGGTAGAA TCCCGAAAGC
CAGAGCGATA TTCATCAGCT GCACCACTTT CTCCTGATGC ACGCCTGCGC ATTGTGTCCG AGCGTGTAGA CTTTATTGAT
AATGTCATCA TTTCTGTCAC GATAGGTCCA CCAAATGCAA GCTATATAAA ATCAAAGGAT AAGAGTACAT GGACTGCAAA
AGATGTTGCT GATTCAGTGT TAGCTGACAG ATCTTCACTG CGAGTTACGT CAACTCAGCG TTTAGAAGAG AGTTCGGTTC
TCAATACCCA TTCTAGTGAA ATTGATGGTG AGAAGTACTG GTATTATGAA TACCTTGTTC GTAAAGCACC TTTGAGACTA
ACTGATGAAT CAAACACTTA CCGGCATTAT CTTGCTTCAA CAGCTGAAAG AGATGGTTAT TTGTACTCTA TCAGTGCTTC
AACCATCAGC CCACGGTGGG AAAAGCTGGG GCCTTTCCTT GAAAAGGCAG TGGGTTCATT TCGTCTCCTT AGTCCAACGG
AAAATTATGT TCCTCCCTAC AAAGATCCCT GGAGATTTTG GTGAAAACTC CTTTTATTTT ATCGTATTCA TGTGATTTTT
TAGGCATGAA ATTTATGTTT CATTTAATTG TTGGTCCAAA AAGGCAAATT GAAATAGATT CTCTGAAAGA GATGAGCAGA
ACATGAGGCC TTCTATTTCT GTTTTTTCTA TTCTTTTTTA TCATTCCTAA ATGTACTTTA ACATCGTTTA TTTAGCAATC
CAATTTAGAT AATAAAACAG AGG

>Vigan.02G087200.01
ATGGTTTTAC CTTCTTCTTC TCTCTCCCTT TCCTTCTTCT TCCCCACTTC TACACTTCTT CCTAATAACC TTATCTTCAG
AAACAACAAC AGGGCTATCT TTAACCCACA CAATTTCCCA TTATCAAAGG AAAGACTACG TTTTTCATGT TGTGCTCTAA
AACCCACTTC GCAAAACAGG GTTTTTAGAA GGGATTTGGT GTTGTTAGGC TTGACCTCGG TTTCTCTAAG ATGGCCACTT
TCAGTGGCTC TTGCTGAAGA AGAGCCCACA ATGGCTTCGT TTTTAGATGA AATAAACGCC TATTCTTATC TGTACCCTGT
TGAGTCGCCT TCCAACAATA TTTCCCTCAA ATGGGTAGAA TCCCGAAAGC CAGAGCGATA TTCATCAGCT GCACCACTTT
CTCCTGATGC ACGCCTGCGC ATTGTGTCCG AGCGTGTAGA CTTTATTGAT AATGTCATCA TTTCTGTCAC GATAGGTCCA
CCAAATGCAA GCTATATAAA ATCAAAGGAT AAGAGTACAT GGACTGCAAA AGATGTTGCT GATTCAGTGT TAGCTGACAG
ATCTTCACTG CGAGTTACGT CAACTCAGCG TTTAGAAGAG AGTTCGGTTC TCAATACCCA TTCTAGTGAA ATTGATGGTG
AGAAGTACTG GTATTATGAA TACCTTGTTC GTAAAGCACC TTTGAGACTA ACTGATGAAT CAAACACTTA CCGGCATTAT
CTTGCTTCAA CAGCTGAAAG AGATGGTTAT TTGTACTCTA TCAGTGCTTC AACCATCAGC CCACGGTGGG AAAAGCTGGG
GCCTTTCCTT GAAAAGGCAG TGGGTTCATT TCGTCTCCTT AGTCCAACGG AAAATTATGT TCCTCCCTAC AAAGATCCCT
GGAGATTTTG GTGA

>Vigan.02G087200.01
MVLPSSSLSL SFFFPTSTLL PNNLIFRNNN RAIFNPHNFP LSKERLRFSC CALKPTSQNR VFRRDLVLLG LTSVSLRWPL
SVALAEEEPT MASFLDEINA YSYLYPVESP SNNISLKWVE SRKPERYSSA APLSPDARLR IVSERVDFID NVIISVTIGP
PNASYIKSKD KSTWTAKDVA DSVLADRSSL RVTSTQRLEE SSVLNTHSSE IDGEKYWYYE YLVRKAPLRL TDESNTYRHY
LASTAERDGY LYSISASTIS PRWEKLGPFL EKAVGSFRLL SPTENYVPPY KDPWRFW*