GBrowse Details

Vigan.02G084200.01

Basic Information:
Name: Vigan.02G084200.01
Multiple alignment
Variant Information
Position: Chr02:6629704..6631558 (+ strand)
Length: 1855
Functional Information:
Description: Similar to DNA-directed RNA polymerase subunit beta'. [XP_007013796.1, Theobroma cacao]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.86,1.76,2.68,19.88,1.25,0.15,1.25,2.11
Arabidopsis thaliana homolog: AT2G25605.1
Automatic updates:
Name: NM_001250390 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500647 (LOC100500647), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255283 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100814673 (LOC100814673), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:6629704..6629828 (+ strand)
Length: 125
Type: five_prime_UTR
Position: Chr02:6629829..6629947 (+ strand)
Length: 119
Type: CDS
Position: Chr02:6630024..6630066 (+ strand)
Length: 43
Type: CDS
Position: Chr02:6630148..6630303 (+ strand)
Length: 156
Type: CDS
Position: Chr02:6630502..6630597 (+ strand)
Length: 96
Type: CDS
Position: Chr02:6630679..6630756 (+ strand)
Length: 78
Type: CDS
Position: Chr02:6631072..6631158 (+ strand)
Length: 87
Type: CDS
Position: Chr02:6631159..6631558 (+ strand)
Length: 400
Type: three_prime_UTR

>Vigan.02G084200.01 class=Sequence position=Chr02:6629704..6631558 (+ strand)
AAATAATCTT CAAGAGACTA AGAGAGACCA TAGACGTCGT GCTCAGAAGC TTGAAGAGAA AAGCGTTCAT CTCAATCTTC
AATTTTTTTT TCTTCTTCTT CCCTTTCGTA TCAGAGCCTT GAACGATGTC GTTTGGATCC TCTCTCTTGT CGCATCCGCA
TTCCGTTAGA TTCTTGTTCA ACAACACCGG AAACTCTCGC TTCAAAGCCG CTGCCGAAGT TCCCGATTCC CTCTCCGAGG
ATTGGTACCT ATTCTTCCTT ACATATATTC ATCCAATTCC ATTTTATTCT CCAATATTCC GATTCCAACA CCGCCTGCAG
GTTCAAATCT CGCAAGAAAA GGCCCTTTGG TCCACGATTA GATGTAATAA TCACTGTCCG CCACTTCCCC TCTTTTCTTT
CCTTTTTCGT TGTTCCTTTT CTGTTAAATT AATGTTTGGT ATAGTTTAGT GCAGAAGATG CGGTGCATTA CCAGCTCGAA
GCCTTGAAGT GTAACGATCA ACCTCGTCAA GACTATGGAA TCGAGGTTAT GTACAGGTTC GCCGGATTTG ATCCTTTTGA
AAGGTCTACC TATTTTGGGC CTTTCTTTGA TTTGGGCCAG GTTCGTTCGT TCGTTCGTTC GTTATGTTAA AGTTGTGTTC
TTCTTTTAAA GTATCTAGAG GAAATTTATT AACTTCTGCA GTAAAACCAT GCTAATGGTA ATTTTTTATT ACTTCATTGT
GTAAAACTTC GGTATACACA ATGAAATAAT TTCTTGTTGA AATTCATGCT AAACAGTAAT ACACCTCTGC ATGTGTAGTT
TGAAAGGTTT AGGCGTATTT TTCACCACTC TACTTATCGA GTATTGCTTG GTCACAAGGA GAGAAAGATC ATGAGCACTT
TGTTTGTCGA GGAGGTAGAA TGTTTGTTCT TGTTCATTTT TTTTTTCTGT GTTATCTTAA AAAACTGATG TTATGGAGTG
ATGAACTTCA AATAGAACAA ATACAAGCAG CGGGTTTGGA TTCGTGGAAG TCGACCGGAG GAAGAAGAGA TATTTCAATT
TACAATGGTT CAGGTTTGGT CACGATTTCT TCCGATACAT CGTATCATCG TACTCATGTT TGTGAGGGAT TTAATACTGT
GTTTGGTTCA TTTTGTTTGC AAAAATTGTT TATTTTTGTT TGGAAGTACG TAGTTAGGCA TTTTGTGAAC TGTGGATTAC
TGCAACAGTA TTTAACTTTG ATGATTCTTT TCTTAATTCA ATGATAGATA TTTGAATTAT TGATTTCTTA AATTAATTAT
AGATTACCTG TTCCCTGTTG TTATCTGATT TAGTTTAATT TAGCGCAACC ATGTATGCAT CTGATGTTTG TTTGCTTGTC
ACTGGCAGAG GGTTGGTGGA TGCTGGGATG GTTACTGGTT GACAGAATCT CTGCTTCACG ACACTGATAC ATTTGCTGGT
GGGTTAGCTT ATTAAGAATC GTCTAATGCA GGAGGAATCA GGTTCACGAG ATTACTGTCA AAAGCATGAA ATAATCTGCA
ATCACCATCC TAATCTGTAA AATTTGGCCA TGGTTAATCT GTAAAATTTG ATTATTGGAT GGTATGAATA GAATTTACAA
CACGGCACAC CATGTACTTA CAAAATATGT TCTTAGATAT TAAAATTCTA TACTTTGCAT TTGCTTGCCC AAAGACGCAA
ACAACTGCGT CGTGAGGCGT AGTCTTTTTA ATCGTGCTAC AAGCAATTCA GAAACTACAT CTTCTGCTGT TTGGTTGTGT
GAAGACGGGT CAAAGATGGC CCGATTAACC AACAAGAAAC CAAACAAATG CAACTAACTA AAACGACACC ATTCAAATTT
ATCACTTCTC TAAAA

>Vigan.02G084200.01
AAATAATCTT CAAGAGACTA AGAGAGACCA TAGACGTCGT GCTCAGAAGC TTGAAGAGAA AAGCGTTCAT CTCAATCTTC
AATTTTTTTT TCTTCTTCTT CCCTTTCGTA TCAGAGCCTT GAACGATGTC GTTTGGATCC TCTCTCTTGT CGCATCCGCA
TTCCGTTAGA TTCTTGTTCA ACAACACCGG AAACTCTCGC TTCAAAGCCG CTGCCGAAGT TCCCGATTCC CTCTCCGAGG
ATTGGTTCAA ATCTCGCAAG AAAAGGCCCT TTGGTCCACG ATTAGATTTT AGTGCAGAAG ATGCGGTGCA TTACCAGCTC
GAAGCCTTGA AGTGTAACGA TCAACCTCGT CAAGACTATG GAATCGAGGT TATGTACAGG TTCGCCGGAT TTGATCCTTT
TGAAAGGTCT ACCTATTTTG GGCCTTTCTT TGATTTGGGC CAGTTTGAAA GGTTTAGGCG TATTTTTCAC CACTCTACTT
ATCGAGTATT GCTTGGTCAC AAGGAGAGAA AGATCATGAG CACTTTGTTT GTCGAGGAGA ACAAATACAA GCAGCGGGTT
TGGATTCGTG GAAGTCGACC GGAGGAAGAA GAGATATTTC AATTTACAAT GGTTCAGAGG GTTGGTGGAT GCTGGGATGG
TTACTGGTTG ACAGAATCTC TGCTTCACGA CACTGATACA TTTGCTGGTG GGTTAGCTTA TTAAGAATCG TCTAATGCAG
GAGGAATCAG GTTCACGAGA TTACTGTCAA AAGCATGAAA TAATCTGCAA TCACCATCCT AATCTGTAAA ATTTGGCCAT
GGTTAATCTG TAAAATTTGA TTATTGGATG GTATGAATAG AATTTACAAC ACGGCACACC ATGTACTTAC AAAATATGTT
CTTAGATATT AAAATTCTAT ACTTTGCATT TGCTTGCCCA AAGACGCAAA CAACTGCGTC GTGAGGCGTA GTCTTTTTAA
TCGTGCTACA AGCAATTCAG AAACTACATC TTCTGCTGTT TGGTTGTGTG AAGACGGGTC AAAGATGGCC CGATTAACCA
ACAAGAAACC AAACAAATGC AACTAACTAA AACGACACCA TTCAAATTTA TCACTTCTCT AAAA

>Vigan.02G084200.01
ATGTCGTTTG GATCCTCTCT CTTGTCGCAT CCGCATTCCG TTAGATTCTT GTTCAACAAC ACCGGAAACT CTCGCTTCAA
AGCCGCTGCC GAAGTTCCCG ATTCCCTCTC CGAGGATTGG TTCAAATCTC GCAAGAAAAG GCCCTTTGGT CCACGATTAG
ATTTTAGTGC AGAAGATGCG GTGCATTACC AGCTCGAAGC CTTGAAGTGT AACGATCAAC CTCGTCAAGA CTATGGAATC
GAGGTTATGT ACAGGTTCGC CGGATTTGAT CCTTTTGAAA GGTCTACCTA TTTTGGGCCT TTCTTTGATT TGGGCCAGTT
TGAAAGGTTT AGGCGTATTT TTCACCACTC TACTTATCGA GTATTGCTTG GTCACAAGGA GAGAAAGATC ATGAGCACTT
TGTTTGTCGA GGAGAACAAA TACAAGCAGC GGGTTTGGAT TCGTGGAAGT CGACCGGAGG AAGAAGAGAT ATTTCAATTT
ACAATGGTTC AGAGGGTTGG TGGATGCTGG GATGGTTACT GGTTGACAGA ATCTCTGCTT CACGACACTG ATACATTTGC
TGGTGGGTTA GCTTATTAA

>Vigan.02G084200.01
MSFGSSLLSH PHSVRFLFNN TGNSRFKAAA EVPDSLSEDW FKSRKKRPFG PRLDFSAEDA VHYQLEALKC NDQPRQDYGI
EVMYRFAGFD PFERSTYFGP FFDLGQFERF RRIFHHSTYR VLLGHKERKI MSTLFVEENK YKQRVWIRGS RPEEEEIFQF
TMVQRVGGCW DGYWLTESLL HDTDTFAGGL AY*