GBrowse Details

Vigan.02G078600.01

Basic Information:
Name: Vigan.02G078600.01
Multiple alignment
Variant Information
Position: Chr02:6082353..6085439 (- strand)
Length: 3087
Functional Information:
Description: Similar to Uncharacterized protein. [I1K8S5, Glycine max]
GO: Molecular Function: carbohydrate binding (GO:0030246)
InterPro: Carbohydrate-binding-like fold (IPR013784)
Carboxypeptidase, regulatory domain (IPR014766)
Domain of unknown function DUF2012 (IPR019008)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:41.96,29.70,52.91,39.65,70.44,69.38,57.02,52.48
Arabidopsis thaliana homolog: AT2G25310.1
Automatic updates:
Name: NM_001250476 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527020 (LOC100527020), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:6082353..6082664 (- strand)
Length: 312
Type: three_prime_UTR
Position: Chr02:6082665..6082759 (- strand)
Length: 95
Type: CDS
Position: Chr02:6083429..6083537 (- strand)
Length: 109
Type: CDS
Position: Chr02:6083643..6083759 (- strand)
Length: 117
Type: CDS
Position: Chr02:6083864..6083927 (- strand)
Length: 64
Type: CDS
Position: Chr02:6084117..6084225 (- strand)
Length: 109
Type: CDS
Position: Chr02:6085080..6085123 (- strand)
Length: 44
Type: CDS
Position: Chr02:6085208..6085299 (- strand)
Length: 92
Type: CDS
Position: Chr02:6085300..6085439 (- strand)
Length: 140
Type: five_prime_UTR

>Vigan.02G078600.01 class=Sequence position=Chr02:6082353..6085439 (- strand)
CCTGATCTCA AGTGATAGAT CGTGAGAGTG CTTTGGTGTC TTCAACTTCA GCGTTTAACA GTTGAAATAG GAAAAAGAAA
AACAGTGTGT TTTGGTGTTT CTGAGAAAAC GAAGGTTTAG ATCAGCTCTC AAATTCTGCC ATGGCCTCCA CCAGATCACT
CATTCTTTTT CTATTAATTC AATTATGCTT CTCAGTTCTA CCCCTCTCAT TCGCCCAATC TCCTGCCACG GGGTATCAAT
TCCCTATTCC CTAAACCCTA ATTTCACTTT GCTTTCTGCT TTCTATTAAC CCTTATTTTA ACGAATCTAT CTCCAGGTCC
ACCGAAGGTT ACACTATTTA TGGTCGAGTG AAGATCCCCA GTACGTTCTT ACTTTTACTT CGTTTTTTTT ATTAATTATT
ATATTTTAAA TCCCGATTAT TGTTTACTGG GGCAGTTCTT TAAATTTTTT ATGAATAAAA AAGTGTTGAA CTTCGATCTG
TGAATGAAGC TTGTGCTTGA TGTGATGACT AAGGCTAAGT TAACAAGTTA ACACACGATA GGATCCTATA GGTTGTGCTG
CGTCATAGAG ATTAATTTTG AATAGTGGTT GGGACTGTAG TGGTACTTGG TTGATCACTC AGTTCATCCT GTTCACATGA
ATTTACCTGC ATTACATTGC TCAAAATTTA CCTGGTTTAA AATTATTGCC TGGTTATTTT ATTCTTCCGT TTTCTCCAAC
TCTTTTTTGC TTGCACGTAC TGATTTTTAA TTTTTTTTAA TAGAACTTGT GCATTCACAG ATAAATACAC CTCTTTTTAC
TTGACAACAA TATTGTCGTG TTAGGATGTG AAATTTCATG TGCCATGACT ATAAAACACC AAACCTTAAT GAAGAATATG
GATGGGTTTA AAAGTTGTTG GTTGCTCTCA TCAGTTACTT TGATGAACTA CATCCGGACA ATTGAAATAG GAAGATGGAA
TTCTGAACTG TTTACTGTGT GTTGTCATTG AAAAAGTATG TCCCGTGGCG TTTAGATAAG CCAGATTTAG CCAGGATTTA
GGGAAGCTGA TGGTTTAGTT ACCAGGCGAT TGATAATTGA AATGGGAAAA TTTGATAGTT TATATCCTTG ATGCATTCAT
TCTATTTGTT GCATATCTAT CTTCTGACTG TATATAGGTT TGCTATAGCC TACAAGTTCT GTTGAATAGT GATATTTCTA
AATATTTATG ACAGGTGTGG GAACAAAAGA ATATATTCTT CCAGGAAAAA TTTCAAACGT CAAAGTCATA CTCAATGGTG
GTCAAAGAGT TACTTTTCTG AGGCCAGATG GATATTTCTC ATTGTATCCT TTTGATTTAC AACTTAATTT CCACTTCTGC
TTAATTTGCA TGATGGATGT TTTTGGGATA TTAAACCCTA TTAAATTCTA TCTCTCCTTA TCTTCTTGTT CTTGATTTTA
TGAAGTTATT GTAGTTAATG CTGGCAAATC ATGTTAAGAG ATGATCTAAT TCCTTAATGT GTATGCTTTA AGCCACAATG
TTCCTGCAGG GACACATCTA ATTGAAGTAG CTGCAATAGG TTATTTCTTT TCTCCGGTGA ATACTCAACC TGAAAATTAC
ATCTCAATTC TTTTCCCCAA ATATATATAT TTTTTTTCAA TGTATGCTCA TTTCTCAAAT TTTTATGTTT ATTAAAAAAG
GTACGAGTTG ATGTAAGTGC TAGACACCAT GGCAAAATTC AGGCGGCACT GACAGAGAAT AGGAGGGGAC TTAGTGAGTT
TGTCTTAGAG CCATTAAGGG ATGAACAATA TTACGAGGTT GGTTTTGACT GCAAATTCCC TGTTTGTGTT TGCCTGTTCC
CCTTCCCATT CCTTCAATTT ATGACCTAAA TGTCTGCATG TTGTTATCTT GTCTTGCTAC AGGTTAGGGA GCCATTCTCT
ATTATGTCCG TTGTGAAAAG TCCAATGGGT CTGATGGTTG GATTTATGCT AATTGTTGTC TTCCTCATGC CCAAATTGAT
GGAGAACATG GGTATGTTTT TAATAACTTA TCTGCTAACT TTTTTGAATT TGAGTCTCTT TTTTGCATAT ATGGATGTAC
TTGCTTTGTA TGGGTGAAAT GTTTTATTTC CTTCTGGAGA AGTTTGGGAC TAATCCTATC TCATACCCGA TATCATTGTT
GCTTGGCAAC GTCAAAATAT AAAAATCAAG TTGAAATATC TGAAGTTCCT TCTATCTTTT TATCTATCTC CCTGTCTTCG
TTCTTGAAGA AAATTTTTCT CCCCTAATTT TCTTGTATTA CTGAGTCATA ACTGAATACT TTGCAACCTT CCACCGCCAT
GCTATTTTAT GTGATCATTG TGTACATATT AAAAGGTTTC AGCTATGAGT TATGCTTCTC TCTTTTTGGG CTTCTACTAA
TTTGTTCTTG CATGATTATC AAACTTGATG AGTTTCTCAG GAAAAAACTT GTTAACTAAT CATTAACTCC ATTTTGGTCA
AAACCCAGAT GAAGTGGGGG AAATCTCGAA AATCTTGTTC AGCTTTACTT TTTGATGTTG TGAATTGCTT TACTTGTTTC
ACAGGCAATG TGCCGAATGG TAGTTTTTTC TTGTTAGTTA TATGAACCTA AAAAGTAGGA TATTGTGCTA CTTTTTGCAT
AAATTATGCT GATGGCCTCA TTGTATTTCT GTGGAAACAG ATCCAGAAGA AATGAGGCGT GCACAAGAAG AAATGAGAAA
TCAAGGAGTT CCATCGTTAG CAAGCTTGTT ACCTGGTGCC GCAAGAAGCA ACTAGGTATA TATGAGTAAT GGAAAACTGG
TGAGCAAGTT GGTTGCCTCA AGCACGAGCT GAAGAAATAT GACTTCTGAT TATTGGAGAA TTTTCTCATG AGAAATTGGT
ACTGAGAAAT CTTTCGATTA TTTATGTTGT GGATTAGCTA AAATTTGAAA TTTCTAATAG TGGTTTATAC GTTTGACTTG
AACGCTCAGG AGTAGGGTTC TGCGTTGCTC TTCCCATTTT CTTGTCAATG TTGATATTAG TAATATTTAG CTCTTTTGGT
TTACTTGTAG AAGCCCTTAA TTTCCACTTT TGGTCGTTTT TCTTGAA

>Vigan.02G078600.01
CCTGATCTCA AGTGATAGAT CGTGAGAGTG CTTTGGTGTC TTCAACTTCA GCGTTTAACA GTTGAAATAG GAAAAAGAAA
AACAGTGTGT TTTGGTGTTT CTGAGAAAAC GAAGGTTTAG ATCAGCTCTC AAATTCTGCC ATGGCCTCCA CCAGATCACT
CATTCTTTTT CTATTAATTC AATTATGCTT CTCAGTTCTA CCCCTCTCAT TCGCCCAATC TCCTGCCACG GGGTCCACCG
AAGGTTACAC TATTTATGGT CGAGTGAAGA TCCCCAGTGT GGGAACAAAA GAATATATTC TTCCAGGAAA AATTTCAAAC
GTCAAAGTCA TACTCAATGG TGGTCAAAGA GTTACTTTTC TGAGGCCAGA TGGATATTTC TCATTCCACA ATGTTCCTGC
AGGGACACAT CTAATTGAAG TAGCTGCAAT AGGTTATTTC TTTTCTCCGG TACGAGTTGA TGTAAGTGCT AGACACCATG
GCAAAATTCA GGCGGCACTG ACAGAGAATA GGAGGGGACT TAGTGAGTTT GTCTTAGAGC CATTAAGGGA TGAACAATAT
TACGAGGTTA GGGAGCCATT CTCTATTATG TCCGTTGTGA AAAGTCCAAT GGGTCTGATG GTTGGATTTA TGCTAATTGT
TGTCTTCCTC ATGCCCAAAT TGATGGAGAA CATGGATCCA GAAGAAATGA GGCGTGCACA AGAAGAAATG AGAAATCAAG
GAGTTCCATC GTTAGCAAGC TTGTTACCTG GTGCCGCAAG AAGCAACTAG GTATATATGA GTAATGGAAA ACTGGTGAGC
AAGTTGGTTG CCTCAAGCAC GAGCTGAAGA AATATGACTT CTGATTATTG GAGAATTTTC TCATGAGAAA TTGGTACTGA
GAAATCTTTC GATTATTTAT GTTGTGGATT AGCTAAAATT TGAAATTTCT AATAGTGGTT TATACGTTTG ACTTGAACGC
TCAGGAGTAG GGTTCTGCGT TGCTCTTCCC ATTTTCTTGT CAATGTTGAT ATTAGTAATA TTTAGCTCTT TTGGTTTACT
TGTAGAAGCC CTTAATTTCC ACTTTTGGTC GTTTTTCTTG AA

>Vigan.02G078600.01
ATGGCCTCCA CCAGATCACT CATTCTTTTT CTATTAATTC AATTATGCTT CTCAGTTCTA CCCCTCTCAT TCGCCCAATC
TCCTGCCACG GGGTCCACCG AAGGTTACAC TATTTATGGT CGAGTGAAGA TCCCCAGTGT GGGAACAAAA GAATATATTC
TTCCAGGAAA AATTTCAAAC GTCAAAGTCA TACTCAATGG TGGTCAAAGA GTTACTTTTC TGAGGCCAGA TGGATATTTC
TCATTCCACA ATGTTCCTGC AGGGACACAT CTAATTGAAG TAGCTGCAAT AGGTTATTTC TTTTCTCCGG TACGAGTTGA
TGTAAGTGCT AGACACCATG GCAAAATTCA GGCGGCACTG ACAGAGAATA GGAGGGGACT TAGTGAGTTT GTCTTAGAGC
CATTAAGGGA TGAACAATAT TACGAGGTTA GGGAGCCATT CTCTATTATG TCCGTTGTGA AAAGTCCAAT GGGTCTGATG
GTTGGATTTA TGCTAATTGT TGTCTTCCTC ATGCCCAAAT TGATGGAGAA CATGGATCCA GAAGAAATGA GGCGTGCACA
AGAAGAAATG AGAAATCAAG GAGTTCCATC GTTAGCAAGC TTGTTACCTG GTGCCGCAAG AAGCAACTAG 

>Vigan.02G078600.01
MASTRSLILF LLIQLCFSVL PLSFAQSPAT GSTEGYTIYG RVKIPSVGTK EYILPGKISN VKVILNGGQR VTFLRPDGYF
SFHNVPAGTH LIEVAAIGYF FSPVRVDVSA RHHGKIQAAL TENRRGLSEF VLEPLRDEQY YEVREPFSIM SVVKSPMGLM
VGFMLIVVFL MPKLMENMDP EEMRRAQEEM RNQGVPSLAS LLPGAARSN*