GBrowse Details

Vigan.02G047600.01

Basic Information:
Name: Vigan.02G047600.01
Multiple alignment
Variant Information
Position: Chr02:3558049..3560606 (+ strand)
Length: 2558
Functional Information:
Description: Similar to Cysteine proteinase. [G7J6Z3, Medicago truncatula]
GO: Biological Process: proteolysis (GO:0006508)
Molecular Function: cysteine-type peptidase activity (GO:0008234)
InterPro: Peptidase C1A, papain C-terminal (IPR000668)
Peptidase C1A, papain (IPR013128)
Proteinase inhibitor I29, cathepsin propeptide (IPR013201)
Cysteine peptidase, histidine active site (IPR025660)
Cysteine peptidase, asparagine active site (IPR025661)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.04,0.06,2.53,0.73,13.45,4.12,20.03,1.44
Automatic updates:
Name: NM_001255731 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cysteine proteinase RD21a-like (LOC100807362), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:3558049..3558065 (+ strand)
Length: 17
Type: five_prime_UTR
Position: Chr02:3558066..3558546 (+ strand)
Length: 481
Type: CDS
Position: Chr02:3559444..3559679 (+ strand)
Length: 236
Type: CDS
Position: Chr02:3559769..3559909 (+ strand)
Length: 141
Type: CDS
Position: Chr02:3560024..3560284 (+ strand)
Length: 261
Type: CDS
Position: Chr02:3560285..3560606 (+ strand)
Length: 322
Type: three_prime_UTR

>Vigan.02G047600.01 class=Sequence position=Chr02:3558049..3560606 (+ strand)
CGAAACAAAA AAAGAAAATG CGGACAAGTA GATCTTCCGC GCCTACGATC CTCATCGTGC TCTTCACGGT CTTCACAGTG
TCTTCCGCGT TGGACCTGTC CATAATCTCA TACGACAGAA CCACCTACGC CGACAAGACA GCCCGGAGAA GCGACAAGGA
GGTGAGAACC ATATACGAGG AGTGGCTTGT GAAGAATGGC AAGCTGCATA CCACCCTCGA CCAGAAAGAG AAGAGGTTTC
AGATTTTCAA AGACAACCTC AAGTTTATCG ACGACCACAA TGCTGAAAAC CGGACATACA AGGTTGGACT GAACCGGTTC
GCCGATCTTA ACAACGATGA ATACCGGTCC AAGTACCTGA CAACCAAGAT TAACCCCCAG AGGATGATGG CAAAGCCAAG
TAACCGTTAC GCTGGGCGCG TGGATGACAA CTTGCCGGAA TCTGTTGATT GGAGGAAAGA AGGTGCTGTG GTGAGAGTCA
AAGACCAAGC AGAGTGCGGT AAGTACTGTA CTCTACTATT ATATTATTAT TGCATACTTT CTTTTCCTCT TATTCTCTGT
TCTCTTACAC TCCTTTGACC AATAATTTAT CTATTCTTCT CCCATGTTTT TCTTGAGAAC ATTATATTTT AAGTTTGGAT
AATATTTTAT AGTTATGATA ACTGGCTTAT ATTAAGTTAA AACATTCCTT TAATTATTTG ATGTTTTTAA TATAATAGTA
AAGTTAATTT AAAAATAAAG ATGAAAATGA TAAATTTAAG TGTAAGAAAT TAAAATGTCA AGTATATTTA TAAAGATGAA
AGAAGACTGA TTTAAATAGT CATTTTCTTA AACTAGTTGT TTCCTCAAAT TAGATTTGAA ATTAAAACAA AAGGGTATGT
TTTTTAAATT AATACAAATT AAATGTAAGT ACTTAATACA TAAGATCGGT ATAAAACACA TGTCTCCTTT CTCGTGATAC
GACATTTCAC CTTCAAGTTA TGTTCCTATT TACAGTTAAA ATTACAGTGT ATATATACTT TATTTGTTCC TACTCCAATG
AAAAATGAAT TTAGTAATAA TATTTTGTGT AGTTCTAATA AAGGCGTTTA AGACTAAATT AAACAAGACT CAAACTTATA
AATCTAATTT TTATAGAATA GTCTTCAATC TCGCACCCAA GATTTCTTAG ATATTAAAGT CCTCCATAAC ACTTTCCTTA
TATGATAAAT TTATTTAATG TAGTCCATTT TCATTTTCTT ATCCTAAAAC TTTGGTAAGA TTTTAAAAAA GATTTGGATT
GTATTTCATG GTAGCTTTGT TTTCGATGTT ATTGGAACCG TGTATAAACT TAAAACCTCA GTTTTTAATG TTCATACAGA
GGGCTGCTGT CTAAGTTACT GTTTTTCTGA TACAGATGGT TGCTGGGCAT TCTCAGCAAT TGCCGCAGTG GAAGGGATTA
ACAAGATAGT AACAGGCAAT CTAACTGCAT TATCAGAGCA AGAACTGTTG GACTGTGACA GAACAGTAAA CGCAGGTTGT
AGTGGCGGAC TTGTGGACTA TGCCTTCGAG TACATTATAA ACAATGGTGG CATTGACACT GAAGATGATT ACCCCTTTCA
AGGCGCTGAT GGTATATGCG ATCAATATAA GGTTCGTTTT TAACTCTATT ATTTGTTAAT TTGGTTAATG TTTTCAATAG
GTTGCAGCTA TTGCTTATAT ACTTTTTTTC TCATCTTTAG CAAAATGCTA GAGCTGTTAC AATTGATGGT TATGAACGTG
TTCCTGCCTA CGATGAGTTA GCCTTGAAAA AGGCAGTAGC AAATCAACCG GTGAGCGTTG CCATTGAAGC ATATGGCAGA
GAGTTTCAGT TATATGAATC TGTAAGTTTG TAATCAATTT TATCTGAAAA GTATAACCTA CATTCTTCTG AGTAATAACA
TTGCTTCTAG ATTCCTGGAG TCATATTATG AATTTATTTG TCTGCATTTT ACTAGGGTAT ATTCACAGGA ACATGTGGTA
CTTTTATCGA TCATGGTGTA GCAGCTGTTG GTTACGGCAC AGAAAATGGA ACTGACTATT GGATCGTGAA GAATTCATGG
GGTGAGAAAT GGGGAGAAGC AGGTTATGTA AGAATGGAAC GCAATATAGC AGAAGACACT GCAGGGAAGT GCGGAATTGC
GATTCTGTCA TTCTATCCCA TAAAGAGGGG CCAAAATCTC TCAAACCCTG TCAACCCACT GGGAATTTAC ATGTAGGAAC
AAGATGAACT TAAGCAAATG ATGACCAACT TAGTTCTCAA TTTCGATTTT TTTTATCTTT CTGTGAAAAA AACAAACACC
ACAAAATGTT TTGGCATAGG AATACCGCAC GGCGAATTAA TGATATGTCA TTTCACTCTA CTGTTGGATG ATGCATCATT
ATATGTGATA GAAATCTGAA TCAGCAAACA TGCGTTGTTT ATTATTAGTT TCATACTTGT TAGTTTCGAA TTCTAGAGTA
GTAAAGTTCG AATAAAGTTG GATATTTTAC GATTTAAAGT ATAACATGTC GGACATATTT GTAACTGTTA AGATCATT

>Vigan.02G047600.01
CGAAACAAAA AAAGAAAATG CGGACAAGTA GATCTTCCGC GCCTACGATC CTCATCGTGC TCTTCACGGT CTTCACAGTG
TCTTCCGCGT TGGACCTGTC CATAATCTCA TACGACAGAA CCACCTACGC CGACAAGACA GCCCGGAGAA GCGACAAGGA
GGTGAGAACC ATATACGAGG AGTGGCTTGT GAAGAATGGC AAGCTGCATA CCACCCTCGA CCAGAAAGAG AAGAGGTTTC
AGATTTTCAA AGACAACCTC AAGTTTATCG ACGACCACAA TGCTGAAAAC CGGACATACA AGGTTGGACT GAACCGGTTC
GCCGATCTTA ACAACGATGA ATACCGGTCC AAGTACCTGA CAACCAAGAT TAACCCCCAG AGGATGATGG CAAAGCCAAG
TAACCGTTAC GCTGGGCGCG TGGATGACAA CTTGCCGGAA TCTGTTGATT GGAGGAAAGA AGGTGCTGTG GTGAGAGTCA
AAGACCAAGC AGAGTGCGAT GGTTGCTGGG CATTCTCAGC AATTGCCGCA GTGGAAGGGA TTAACAAGAT AGTAACAGGC
AATCTAACTG CATTATCAGA GCAAGAACTG TTGGACTGTG ACAGAACAGT AAACGCAGGT TGTAGTGGCG GACTTGTGGA
CTATGCCTTC GAGTACATTA TAAACAATGG TGGCATTGAC ACTGAAGATG ATTACCCCTT TCAAGGCGCT GATGGTATAT
GCGATCAATA TAAGCAAAAT GCTAGAGCTG TTACAATTGA TGGTTATGAA CGTGTTCCTG CCTACGATGA GTTAGCCTTG
AAAAAGGCAG TAGCAAATCA ACCGGTGAGC GTTGCCATTG AAGCATATGG CAGAGAGTTT CAGTTATATG AATCTGGTAT
ATTCACAGGA ACATGTGGTA CTTTTATCGA TCATGGTGTA GCAGCTGTTG GTTACGGCAC AGAAAATGGA ACTGACTATT
GGATCGTGAA GAATTCATGG GGTGAGAAAT GGGGAGAAGC AGGTTATGTA AGAATGGAAC GCAATATAGC AGAAGACACT
GCAGGGAAGT GCGGAATTGC GATTCTGTCA TTCTATCCCA TAAAGAGGGG CCAAAATCTC TCAAACCCTG TCAACCCACT
GGGAATTTAC ATGTAGGAAC AAGATGAACT TAAGCAAATG ATGACCAACT TAGTTCTCAA TTTCGATTTT TTTTATCTTT
CTGTGAAAAA AACAAACACC ACAAAATGTT TTGGCATAGG AATACCGCAC GGCGAATTAA TGATATGTCA TTTCACTCTA
CTGTTGGATG ATGCATCATT ATATGTGATA GAAATCTGAA TCAGCAAACA TGCGTTGTTT ATTATTAGTT TCATACTTGT
TAGTTTCGAA TTCTAGAGTA GTAAAGTTCG AATAAAGTTG GATATTTTAC GATTTAAAGT ATAACATGTC GGACATATTT
GTAACTGTTA AGATCATT

>Vigan.02G047600.01
ATGCGGACAA GTAGATCTTC CGCGCCTACG ATCCTCATCG TGCTCTTCAC GGTCTTCACA GTGTCTTCCG CGTTGGACCT
GTCCATAATC TCATACGACA GAACCACCTA CGCCGACAAG ACAGCCCGGA GAAGCGACAA GGAGGTGAGA ACCATATACG
AGGAGTGGCT TGTGAAGAAT GGCAAGCTGC ATACCACCCT CGACCAGAAA GAGAAGAGGT TTCAGATTTT CAAAGACAAC
CTCAAGTTTA TCGACGACCA CAATGCTGAA AACCGGACAT ACAAGGTTGG ACTGAACCGG TTCGCCGATC TTAACAACGA
TGAATACCGG TCCAAGTACC TGACAACCAA GATTAACCCC CAGAGGATGA TGGCAAAGCC AAGTAACCGT TACGCTGGGC
GCGTGGATGA CAACTTGCCG GAATCTGTTG ATTGGAGGAA AGAAGGTGCT GTGGTGAGAG TCAAAGACCA AGCAGAGTGC
GATGGTTGCT GGGCATTCTC AGCAATTGCC GCAGTGGAAG GGATTAACAA GATAGTAACA GGCAATCTAA CTGCATTATC
AGAGCAAGAA CTGTTGGACT GTGACAGAAC AGTAAACGCA GGTTGTAGTG GCGGACTTGT GGACTATGCC TTCGAGTACA
TTATAAACAA TGGTGGCATT GACACTGAAG ATGATTACCC CTTTCAAGGC GCTGATGGTA TATGCGATCA ATATAAGCAA
AATGCTAGAG CTGTTACAAT TGATGGTTAT GAACGTGTTC CTGCCTACGA TGAGTTAGCC TTGAAAAAGG CAGTAGCAAA
TCAACCGGTG AGCGTTGCCA TTGAAGCATA TGGCAGAGAG TTTCAGTTAT ATGAATCTGG TATATTCACA GGAACATGTG
GTACTTTTAT CGATCATGGT GTAGCAGCTG TTGGTTACGG CACAGAAAAT GGAACTGACT ATTGGATCGT GAAGAATTCA
TGGGGTGAGA AATGGGGAGA AGCAGGTTAT GTAAGAATGG AACGCAATAT AGCAGAAGAC ACTGCAGGGA AGTGCGGAAT
TGCGATTCTG TCATTCTATC CCATAAAGAG GGGCCAAAAT CTCTCAAACC CTGTCAACCC ACTGGGAATT TACATGTAG

>Vigan.02G047600.01
MRTSRSSAPT ILIVLFTVFT VSSALDLSII SYDRTTYADK TARRSDKEVR TIYEEWLVKN GKLHTTLDQK EKRFQIFKDN
LKFIDDHNAE NRTYKVGLNR FADLNNDEYR SKYLTTKINP QRMMAKPSNR YAGRVDDNLP ESVDWRKEGA VVRVKDQAEC
DGCWAFSAIA AVEGINKIVT GNLTALSEQE LLDCDRTVNA GCSGGLVDYA FEYIINNGGI DTEDDYPFQG ADGICDQYKQ
NARAVTIDGY ERVPAYDELA LKKAVANQPV SVAIEAYGRE FQLYESGIFT GTCGTFIDHG VAAVGYGTEN GTDYWIVKNS
WGEKWGEAGY VRMERNIAED TAGKCGIAIL SFYPIKRGQN LSNPVNPLGI YM*