GBrowse Details

Vigan.02G036000.01

Basic Information:
Name: Vigan.02G036000.01
Multiple alignment
Variant Information
Position: Chr02:2657694..2662205 (- strand)
Length: 4512
Functional Information:
Description: Similar to Uncharacterized protein. [I1JTA6, Glycine max]
GO: Biological Process: DNA repair (GO:0006281)
Biological Process: base-excision repair (GO:0006284)
Molecular Function: catalytic activity (GO:0003824)
InterPro: HhH-GPD domain (IPR003265)
DNA glycosylase (IPR011257)
Helix-turn-helix, base-excision DNA repair, C-terminal (IPR023170)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:19.91,22.35,16.98,13.33,18.42,21.55,15.70,14.84
Arabidopsis thaliana homolog: AT1G19480.1
Structure :
Position: Chr02:2657694..2658276 (- strand)
Length: 583
Type: three_prime_UTR
Position: Chr02:2658277..2658301 (- strand)
Length: 25
Type: CDS
Position: Chr02:2660908..2661992 (- strand)
Length: 1085
Type: CDS
Position: Chr02:2661993..2662205 (- strand)
Length: 213
Type: five_prime_UTR

>Vigan.02G036000.01 class=Sequence position=Chr02:2657694..2662205 (- strand)
AGAAAACCCA CACCAAAGTA GGATCCAAGA CGAAGACCAA GAGGAACAAG AAAAGCAGCG AAACTGAAGA GAGAATGAAG
AAATAAATTA TTAGAAGCAG TTGGATTAAA GGAGAGTGAG TTTCAACCAT TGTCATCGTC AACATCATCA CATTACATTC
ATTTCACTTC AAACTCGTTC ACTTTCCTCA ATCTCCAATT CAACCTCACA CTTATGGGCG AACACACGCT AGGTCAAGCA
CAATCCCTAA TCGAACCTCA ACCCCACCCA GCTCCCTCCT CCTCCGCCGC TGGCCCCGAC GGCGCTCAGG CGGACTCAGA
ACTAAACAAT GTCCTTCCGC ACGTAAACTC CCCTGCCTCC AAAATCCCCC TCCGTCCCCG TAAGATCCGG AAGGTCTCAC
CGGACCCTTC CACATCCGAA TCCCTAACCG AACCCTCTAA ACCGGGCAAG AGCGGCGGCC GGAGCACCAA GCATGTTCCG
CCTTCGCGAG CCATGGCGGT GGTGCCGCGC TTAGTGGCGC GTTCACTCTC GTGTGAAGGC GAGGTGGAGA TCGCGCTCCG
ATTTCTCAGG AACGCGGACC CTCTTCTCTC TCCTCTTATC GACATTCACC AACCCCCAAC CTTCGACAAT TTCCACACTC
CCTTCCTCGC CCTAACGCGT AGCATCTTGT ACCAGCAACT CGCGTACAAA GCAGGCACCT CCATCTACAC GCGCTTCATC
GCGCTCTGCG GTGGCGAAAA CGGCGTCGTT CCCGAAACCG TTCTCGCTTT GACTCCCCAA CAGCTTCGCC AAATTGGGGT
TTCGGGGCGG AAGGCGAGTT ACCTTCACGA TTTGGCGAGG AAGTACCAGA ACGGGATACT GTCCGATTCG ACCATTGTGA
ACATGGATGA TAAGTCACTC TTCACTATGC TAACCATGGT CAATGGAATT GGCTCTTGGT CTGTTCACAT GTTCATGATT
TTTTCCCTCC ACAGACCCGA TGTTCTCCCC ATCAATGATT TGGGTGTGAG GAAAGGGGTT CAGCTTCTTT ATAACCTCGA
GGACTTGCCG CGGCCGTCGC AGATGGACCA ATTGTGTGAG AAGTGGAGGC CTTATCGTTC TGTTGCGTCG TGGTATATGT
GGAGATTTGT TGAAGCCAAA GGAACTCCTT CTAGTGCTGT GGCAGTAGCC ACTGGTGCCG GCTTGCAGCA CCAGCATCAC
CACCAGCACC AACAACATGA GCAACAGCAG CAACAGCAAC AGCAACATCC TCCACAGCCG CAGCTTCTGG ACCCCATAAA
TAGTATGTTT AATCTCGGGT AAGACATTAC TGGCTCCGAA GCTTTTCATA TGCTTGATTT AATGGTTTAT GTGGTGATTT
GATCCCTTGT AAAGTGGTAG TATTAAATGA AATTCTTCAC ATTTAGAATA TGTATGTGAT GATTAATTTC GTCTTTTACT
TTGATTGTTT TATTTAAAAT TAAATGAATT GTATACGAAA ATGTATAATC AAAGGTTTAC TTTTTGAATA TGGAAAATGC
TGCTGATGAG CAATTGTATA CCGTCGCTTG GTGATTATTC GGGGAGAGAT ATGCACTTTC GTCTCGTGAA GACGTGGTGC
TGTATTCTTT CTTTTTCCCA GATTAGGAAA GCCTTCGTAC CTCGGGGAGA GATATGCACT TTCTTTTAAT CTTTGTTCAA
TTTCCATTAA GTTGACTGGT CGTTGAACTT ATAAGTCTTT GAGACATTTT TTTGCTGCTC CTTTCTCTTT TTCTGCAAGC
TAATTTGAAA AAGAAAAGGA ATACCGTAAG ACACTTTTGG TCTTCCAATA TCACAATCGT ATGATTTTAC TCCCTCGAGT
TCCAACTGTG GTAATTGGGT TTTCAAGCAT GGTAAATGTG CGACTTTAGT CTCGTAGGCT TCATTTGTGT CAATTGAATC
CTCTGGATAT TGTAATTGTG TGGTTTTAAT CCTCTCATTA ATTGGAATTA GTTGATGAAA CATTGACTTA TGACAACTAA
AACCACACAA TATGCACAAT TAGAACACAG GGAACTAAAA TTAAACAATT GTAATTTCAG AAGGATCCGC TTGGCACAAT
TAAAACTTGA GGGGTTAAAA TCACATGATT GTTATACAAA GGGGACAAAA AGGACAATTA AGTTAAAACT TTTTTGTGTC
AGTGTTTTTG GCAGATGATA CTTAAAATAA TGCGATGTAG AATTCCTGAT GGCTAAGATG TCATGTGAAA CCTAGCTTTC
TCTGTCTAAT GAGGAAGAAA ACCAGTGCCT TTTGTGTCTT GGTCATCTAT GGTGACAAGA TATGTTGCAT GTGATTAACT
GATGCACTCT TTTTGGTTCT CTTGTTATGC AGTGTATGAA TTGAGGGGAA ATTTGACGTC TCTCAAATTG TATATAGTAT
ATATAGGTTG TACGAGGGAA GAAACACTTG CTGGCATTTT CTTGCATTAC TAGTACGTGG GTGTGAAAAA GGATGAAACC
AATAATTATA TAGAAAAGTA TGGAATAACA TTTAAGAATT GAACTAGTAC CACCAAAACT TCAAGTGGTG ATGCTATTAA
GTAAAACTGA TTACCTAAAC ATGGAATGGT CACTATATGA TTTGTGCTGC TGGGATTGAA AGAATTGCTG CGTCAATTAA
GCTATCTTCC CCCCAAAAGA AGTGTTGAGA GGAGATCATT GTTGCCTTGT TTATCTTGAA GGGAATAAGC CAACACTCCC
CATTAAACAT AATAGACAGT GGGTATGTAC AGTTTAATAA GTCAATGCTT GGAAGCTTCT AGGATGAACT ATATACTACC
ATTGCATGGT TTGCATTGGA AGAAGAGATG CGAGGATCTT GATTTATCAT TGAAACTTAA ATTTTTTTAT GTATATTATT
TTATACTTAG GCTACGAGTT CATTTGAAGG CAGGACTGGT TCCTATGTTC ATTAAATTGA TTTTTTCTTT TAAAATAGAT
AAGGTAGTGA AAATAACTTG TGGTTACAAC ATGTGAGGAG TTGATGCATA AGAGATGCTC AAGGTCTATT GTTGTGTTGT
TTATTTATTG CGAGTTGCTA GATGGTGATT TGAATTGGAA ACTATTTTTG ATTTATCCAA ATCCCCCCTT AAGACGCCTC
GGGTGATTAG TGAGCGGCAG GAGAACTTTG CTTTGTTAGG TCAGTGTGGC CTTTTAGTCG TCGATGGGCT TGATGTAGTA
GCAGTGTATG GATCTCACTT TTCATTCATT GATCTGATGT GATCATTGGA CCTTCAAGGT GGTTATATTT TTGGAATTTC
GTCTTTTCTC GTCATATTTT GGAAAATTGC TTCTCTTCCT GTTAATAGCT AGTGTTTAGT TTGGTAGCCT GGTAATTATA
TTATTATTCA CGTGTCTATT TAGTGGTTTC CTTATGTGAT CCGTCTTCTG AAGCTCAACT TATAATCTTC GGTTACTAGA
TTTTTTTTTT GTAAAAGTTG ACGTTGGAAT CATTTCCATA ACGTAATGAA GACAAAAAAA TGGTGTCAAG TTATTTCTTC
CGTTGGTTAT TTTTGATATA TCTCCTACGA AGGCGTGTAT TTTATTTATA ATAATTTTAG GTGTAAACTT AATAATGCTA
TGTTTTATCA GTTTGTTATG GTATGTTGTG ATCGTGTTGT CATGTACTTG CTTGTGCTTC GGGGTGTCAA CTGTCAAGTA
TTTCCCTAAA ATCTGATTGA TATAGAGTTT ATAACAATAT ACAAAATTCA GTTACTGTGA AGGAGAGGAG TGAAAATTTC
AAGGTACAGT ACGCGTCTGT CATTTAGCTT CATTTGTTTC TGTTCTCTCC AACTTCAAAT ATGTAATTGT TTATGTTGTC
TAATATACTA TTGATGTAAT TTTAACACGT TTGTCATCTC TATGTTCTGT CAAATGTGCT ACAGGGCCGC CTGTGCTTGG
GGACAATGAT CCCCAACGGA ATTTGTATCA GGCTTCGTTA GCAGTCGCTC ACACGGGAAG TTGCAAAGAC ACGACGTGAA
GTGTATTTAA TGATAGATCT TAGTACTGAG ACTTGGACAT TGGGAGCATT GAAGCATCAA TGTATGATTT GCCTTGTGTT
CAATAAAAGC CAGTGCAAGA TTAATAAAGG CCACTCCTTA CTTTTGTTTT TATTTAAGTA ATTGTAGTTG TTGGAGGGCT
ATGTCATGTT GTTAAGGCGT CAGTTAGTAG GACTAGACTG ATTAGAGGGC TGTGTTTCAT TGCCTTTGCT GCATGGTAGT
GTGTTTTTTT GGAGTGTCAG ACCATGTGAT GTAATTAATG TATGCATGGA GTCATTATCT TGCATCCTGC TGCTACTGGA
TGAGCCCTAT GCTTTATGTG TCGTTCTTCT AATGCAAAGA AAAGTGGGGG ACTAATTATC TGGTAATAGG TTTTGAATGT
AATAGATGTC AGTAGTAGTA GTGCAGTTTA CATCCTATGT TTTTATTGCT AAGTCATGTG GTGATCAGTA ACCCTAAGAT
TAATAAAAGA AACTAGCTTA TTTAATTTCC TA

>Vigan.02G036000.01
AGAAAACCCA CACCAAAGTA GGATCCAAGA CGAAGACCAA GAGGAACAAG AAAAGCAGCG AAACTGAAGA GAGAATGAAG
AAATAAATTA TTAGAAGCAG TTGGATTAAA GGAGAGTGAG TTTCAACCAT TGTCATCGTC AACATCATCA CATTACATTC
ATTTCACTTC AAACTCGTTC ACTTTCCTCA ATCTCCAATT CAACCTCACA CTTATGGGCG AACACACGCT AGGTCAAGCA
CAATCCCTAA TCGAACCTCA ACCCCACCCA GCTCCCTCCT CCTCCGCCGC TGGCCCCGAC GGCGCTCAGG CGGACTCAGA
ACTAAACAAT GTCCTTCCGC ACGTAAACTC CCCTGCCTCC AAAATCCCCC TCCGTCCCCG TAAGATCCGG AAGGTCTCAC
CGGACCCTTC CACATCCGAA TCCCTAACCG AACCCTCTAA ACCGGGCAAG AGCGGCGGCC GGAGCACCAA GCATGTTCCG
CCTTCGCGAG CCATGGCGGT GGTGCCGCGC TTAGTGGCGC GTTCACTCTC GTGTGAAGGC GAGGTGGAGA TCGCGCTCCG
ATTTCTCAGG AACGCGGACC CTCTTCTCTC TCCTCTTATC GACATTCACC AACCCCCAAC CTTCGACAAT TTCCACACTC
CCTTCCTCGC CCTAACGCGT AGCATCTTGT ACCAGCAACT CGCGTACAAA GCAGGCACCT CCATCTACAC GCGCTTCATC
GCGCTCTGCG GTGGCGAAAA CGGCGTCGTT CCCGAAACCG TTCTCGCTTT GACTCCCCAA CAGCTTCGCC AAATTGGGGT
TTCGGGGCGG AAGGCGAGTT ACCTTCACGA TTTGGCGAGG AAGTACCAGA ACGGGATACT GTCCGATTCG ACCATTGTGA
ACATGGATGA TAAGTCACTC TTCACTATGC TAACCATGGT CAATGGAATT GGCTCTTGGT CTGTTCACAT GTTCATGATT
TTTTCCCTCC ACAGACCCGA TGTTCTCCCC ATCAATGATT TGGGTGTGAG GAAAGGGGTT CAGCTTCTTT ATAACCTCGA
GGACTTGCCG CGGCCGTCGC AGATGGACCA ATTGTGTGAG AAGTGGAGGC CTTATCGTTC TGTTGCGTCG TGGTATATGT
GGAGATTTGT TGAAGCCAAA GGAACTCCTT CTAGTGCTGT GGCAGTAGCC ACTGGTGCCG GCTTGCAGCA CCAGCATCAC
CACCAGCACC AACAACATGA GCAACAGCAG CAACAGCAAC AGCAACATCC TCCACAGCCG CAGCTTCTGG ACCCCATAAA
TAGTATGTTT AATCTCGGGG CCGCCTGTGC TTGGGGACAA TGATCCCCAA CGGAATTTGT ATCAGGCTTC GTTAGCAGTC
GCTCACACGG GAAGTTGCAA AGACACGACG TGAAGTGTAT TTAATGATAG ATCTTAGTAC TGAGACTTGG ACATTGGGAG
CATTGAAGCA TCAATGTATG ATTTGCCTTG TGTTCAATAA AAGCCAGTGC AAGATTAATA AAGGCCACTC CTTACTTTTG
TTTTTATTTA AGTAATTGTA GTTGTTGGAG GGCTATGTCA TGTTGTTAAG GCGTCAGTTA GTAGGACTAG ACTGATTAGA
GGGCTGTGTT TCATTGCCTT TGCTGCATGG TAGTGTGTTT TTTTGGAGTG TCAGACCATG TGATGTAATT AATGTATGCA
TGGAGTCATT ATCTTGCATC CTGCTGCTAC TGGATGAGCC CTATGCTTTA TGTGTCGTTC TTCTAATGCA AAGAAAAGTG
GGGGACTAAT TATCTGGTAA TAGGTTTTGA ATGTAATAGA TGTCAGTAGT AGTAGTGCAG TTTACATCCT ATGTTTTTAT
TGCTAAGTCA TGTGGTGATC AGTAACCCTA AGATTAATAA AAGAAACTAG CTTATTTAAT TTCCTA

>Vigan.02G036000.01
ATGGGCGAAC ACACGCTAGG TCAAGCACAA TCCCTAATCG AACCTCAACC CCACCCAGCT CCCTCCTCCT CCGCCGCTGG
CCCCGACGGC GCTCAGGCGG ACTCAGAACT AAACAATGTC CTTCCGCACG TAAACTCCCC TGCCTCCAAA ATCCCCCTCC
GTCCCCGTAA GATCCGGAAG GTCTCACCGG ACCCTTCCAC ATCCGAATCC CTAACCGAAC CCTCTAAACC GGGCAAGAGC
GGCGGCCGGA GCACCAAGCA TGTTCCGCCT TCGCGAGCCA TGGCGGTGGT GCCGCGCTTA GTGGCGCGTT CACTCTCGTG
TGAAGGCGAG GTGGAGATCG CGCTCCGATT TCTCAGGAAC GCGGACCCTC TTCTCTCTCC TCTTATCGAC ATTCACCAAC
CCCCAACCTT CGACAATTTC CACACTCCCT TCCTCGCCCT AACGCGTAGC ATCTTGTACC AGCAACTCGC GTACAAAGCA
GGCACCTCCA TCTACACGCG CTTCATCGCG CTCTGCGGTG GCGAAAACGG CGTCGTTCCC GAAACCGTTC TCGCTTTGAC
TCCCCAACAG CTTCGCCAAA TTGGGGTTTC GGGGCGGAAG GCGAGTTACC TTCACGATTT GGCGAGGAAG TACCAGAACG
GGATACTGTC CGATTCGACC ATTGTGAACA TGGATGATAA GTCACTCTTC ACTATGCTAA CCATGGTCAA TGGAATTGGC
TCTTGGTCTG TTCACATGTT CATGATTTTT TCCCTCCACA GACCCGATGT TCTCCCCATC AATGATTTGG GTGTGAGGAA
AGGGGTTCAG CTTCTTTATA ACCTCGAGGA CTTGCCGCGG CCGTCGCAGA TGGACCAATT GTGTGAGAAG TGGAGGCCTT
ATCGTTCTGT TGCGTCGTGG TATATGTGGA GATTTGTTGA AGCCAAAGGA ACTCCTTCTA GTGCTGTGGC AGTAGCCACT
GGTGCCGGCT TGCAGCACCA GCATCACCAC CAGCACCAAC AACATGAGCA ACAGCAGCAA CAGCAACAGC AACATCCTCC
ACAGCCGCAG CTTCTGGACC CCATAAATAG TATGTTTAAT CTCGGGGCCG CCTGTGCTTG GGGACAATGA 

>Vigan.02G036000.01
MGEHTLGQAQ SLIEPQPHPA PSSSAAGPDG AQADSELNNV LPHVNSPASK IPLRPRKIRK VSPDPSTSES LTEPSKPGKS
GGRSTKHVPP SRAMAVVPRL VARSLSCEGE VEIALRFLRN ADPLLSPLID IHQPPTFDNF HTPFLALTRS ILYQQLAYKA
GTSIYTRFIA LCGGENGVVP ETVLALTPQQ LRQIGVSGRK ASYLHDLARK YQNGILSDST IVNMDDKSLF TMLTMVNGIG
SWSVHMFMIF SLHRPDVLPI NDLGVRKGVQ LLYNLEDLPR PSQMDQLCEK WRPYRSVASW YMWRFVEAKG TPSSAVAVAT
GAGLQHQHHH QHQQHEQQQQ QQQQHPPQPQ LLDPINSMFN LGAACAWGQ*