GBrowse Details

Vigan.02G032100.01

Basic Information:
Name: Vigan.02G032100.01
Multiple alignment
Variant Information
Position: Chr02:2372710..2378812 (+ strand)
Length: 6103
Functional Information:
Description: Similar to Uncharacterized protein. [I1K7N0, Glycine max]
GO: Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367)
Cellular Component: transcription factor TFIIF complex (GO:0005674)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: ATP binding (GO:0005524)
InterPro: Transcription initiation factor IIF, beta subunit (IPR003196)
Transcription Factor IIF, Rap30/Rap74, interaction (IPR011039)
Winged helix-turn-helix DNA-binding domain (IPR011991)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:82.64,127.81,29.55,30.59,41.52,26.13,34.44,29.63
Arabidopsis thaliana homolog: AT1G75510.1
Automatic updates:
Name: NM_001254676 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max transcription initiation factor IIF subunit beta-like (LOC100788473), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:2372710..2372870 (+ strand)
Length: 161
Type: five_prime_UTR
Position: Chr02:2372871..2373068 (+ strand)
Length: 198
Type: CDS
Position: Chr02:2374851..2374959 (+ strand)
Length: 109
Type: CDS
Position: Chr02:2377492..2377625 (+ strand)
Length: 134
Type: CDS
Position: Chr02:2377731..2377805 (+ strand)
Length: 75
Type: CDS
Position: Chr02:2378130..2378279 (+ strand)
Length: 150
Type: CDS
Position: Chr02:2378441..2378560 (+ strand)
Length: 120
Type: CDS
Position: Chr02:2378561..2378812 (+ strand)
Length: 252
Type: three_prime_UTR

>Vigan.02G032100.01 class=Sequence position=Chr02:2372710..2378812 (+ strand)
CAAGAAGAGG CTATGTAAAT GCTAAAGTTT CAATACGAGG GGTTGAGCTC GAGGTCAAAT ATAATTGACT TGGGGCGGTG
TCGGTTTCCA GACACGAGCG TGGTTTTCGT TGGTACCTGG AGGAAGCACA GTGAGAGAGA AAGAAAGAGA GAGAGAGAGA
GATGGATGAA GAGAATGGTT ACAGTGGGAG TAGCAGCTCC AATTTGGAGA CTTTGAAGGC GGAGAGATCT GTGTGGTTGA
TGAAATGCCC TTTGGTGGTG GCTAAGTCAT GGCAGACTCA TCCTCCTTCT CAACCCCTCG CTAAGGTCGT CCTCTCCCTC
GATCCTCTCC ACCCTGAAGA AGATCCCTCT GCAGTTCAGG TTCTCCTTCT TATTCTTTTT TTACGCCCTT ACTTTTATCC
AATTCTGCTC CTGTTACCGG AAAGATTCAC ACATATTCGA TGCTCTTTAA ATTGATATCG AGTCTAAGTT GGATACCGTG
CCTTTCGTTT AGATTGTCAA AATCTTATGT GGTTCGCAAT TTCGGAAAAA TGCAATGAAT AGCAACTTTG TGGTTGACCA
ATAAATGACT GCGAAGTGTG CTAGACACTG TGGAGTCATG GAATTGACTT GCTGTGAAGG TCATCAGATA GGAATCGATT
TGTTTCTTGA ATCCTTTAGA TACGAGTTCT ATCTATGATA CCACGGTTTT GAATTTTGGT TGGGGTTTTG TTTATTATGT
GATCCTATAT GATGGAAAAC CTTGAATTGT GGTCGCGAAG AGCTCATTAA TGGTGTTATG GCCGCAATTC TGATTGCGGA
TGTTTTTTCA TTGAATGTTT CCACGGTAGT TGGTTTCTCC TTAGAGTAGT GTGAATTGGT TTGGTTGTTC CACTTTGTGG
TTCATTGCCT GCGAATTCCT GGAAAATGAT GTATGGAGCT TGGCTAGACC ATGCATGGTG GTGGAGTGAG CATTTGAGAC
TGCTAATGGG TAGATCTTTG ACATCAGGTT GGTGGGAACC TATTTTGTTT CTTTTCATCA CTGATGGGGA TGTGAGTACT
GTTGAAAGGA GATAAGGGAA TGACACCTGC ATATAGACGT GACAAGATGA TAGGAACAAT CAATAGAAAC GCAACAATAT
TATTGATTGG GAAAAAACAA ACTATTTCAG AAGATGACCC CTGTAATCCT AGAGCTAATG CTCCTTAAAT AAGAGATGAC
TCTCTCTGCC CACTTCTCAT GCCTTCTCCC TGTCACGCTC TCTCCCTAAA TTACATTGCC TCCTCTAGTA AACTGGCCAC
ATCAGCAATT GTGACAAATA TTGTGTTTCA GCTGTAGATT TGACTTAGGC CCCAAACCCA AGATCCTAAG ATGAGATAAT
TGGATCAGAC CTATGGATGA AAACCAAGAA CAGAGAGAAT CGTGCGTGGG ACAGGCACCT TTGAAACAGA TTTCGCATGA
GCCTTAACAC TCCAGAAACT TGTCTTTTTT GTAATTCAAA ACAGCGTAAA AGGTTGAGGT TTTTCTCTGA AATGGTAGCC
TTAATGGGCT CACAAACTTC ATGTAGAACT TGTGAGCTTG ACCAATCCCA AGCACATTTG CTCAATTTCA CCAGAAAATA
ATTTTTCTTG CACTTCTGCT TGATTTTGGG GAGCGGGCCT ATATAACTTA TCCGCTTGTA AACTAGGAGT TTCACCAAAA
ACATGCCCTA CTGTACCAAC CAAGTATCCC CTTGCATACC ATATGTTTAA TGCAGTAATA TATCATGCAC CTGTATCATC
AAAGACTGCT GCTATTGGGT AACTGTGATG TATACTTAAA AATCTACGAA TTTAAGTGGG TTTACTTTGA TTTTAGTGAT
AAGAGACAAT TTTTTTCCTT ATTAAGTTAC CTGTTTTAAA TATTCTAAGT AACGGATGGA GTGCCCCATT TAATTAAAAG
GAATTCTATT AATTTTTGAG GTATTCCAAA TGTGGAATAT GACTTGCAAA TTCATTTAAT TTTTCTTAAT GATAAGTTCC
ACCACATGAC ATTATTGATT GTGCAAGATG AATACAGATT CTGCTTCTAG ATTTTTGACA TTATAGGCAA TAATTTTGGA
TGAATATTTG TTGCTTGTCT TCATGTGAGA TATTGATTTT ATAGCTCCTT AACCATGACA GTTTACAATG GAGATGGCTG
GCTCTGAAGC TGTGAATATG CCAAAAACTT ATTCATTGAA TATGTTTAAG GACTTTGTTC CTATGTGTGT TTTCTCTGAG
ACTAGCCAAG GTGAGAATCG TAATCTCAGG TTTATACCAT TTGTAGTTTT TACTCATCAA TGGCAAGTTA TGTTTTATAT
CTGTTGTAGT TTTTTATTCA TCAATAGTAA GTACTGTTCT TATAACAGTT GTAGTTTGTA CCAATTATTT ACGAGTTCAT
TCGAAGCCTG TAATGTTTCT CATTCTCTAA CTTGATATAT ATATGATAAA AGATACCATG TTCAATTCAA TACTGTTCCA
GCTATATAAT TTGATGAGCA AATTGTTTTG ATGCTTGGAT CACACCATAA ATCAGACATG AATAGCAAAT ATTGCAACTT
GGAGTAGAAT AATACGATTC TTGCACAGGT TCTACGAGGT CTTAAGTGTA GTTGCGGCCC CTTGCCACTC CTCCAAGGCC
CATCACGCCT GGCTTGAGCA GTGCTTTTTG AACTGAAAAG GGCAGCCAGA GTGGATAAAT TGACTTCATC ACAGTTATAA
GTTCTGTTCT ACTCATGGCT GCACTTGCAT CTAGTGTGAT AATAGGGAAG AGAGATGACC GTTTTCACAA GCCTAATCCT
ACATGACAGT TTATTCTATT TATTTTTACT TTAACTACTT TTGTGTTTTA ATTGCAAGAT ATGATGTGTT TCAACTTTGG
ACCATAAGTT TTAACTGTTA TATTTTTGCA CTAGATATTT AAATATTGTT GAACGTCTAG TGTAAAATAA AAACATATTT
AATTGAGATG ATAGTTTTTT ATTTCAACAA CTGTTAGTTT CGCATCTTTC TTTTATCATA AAATCTATGT AAAACATTGT
AAAATTTATT GTTTTTCAAA TACAAATATT TAATATCGGA GTATGTATTA TAAATTCTAT TATGTGTAGC AATTTTAATA
GTATTTATTT TGAACATTAA TATTATTCTA TTATAACATA TTTTAACAGA AGTCATGCTC CTAGATTTAT CTTTTTAGTT
ATTGATGATG AATATGTGCT TTAATTTGTT TTCTTAGTTT GTGAATGCGA GGGGATGCTT TATTATTAAT CTTCAATCTA
CCGTTCAATT ATTATCCCTC TGATTCATTA TTTGAGTCCT GATTCAATTA CCATTTATAA GTTCATTTTC TTACTCCTTT
TTTGTTTCTT ACTTCACTTT CATCAAATCT GGGATTTGGT TGGAAACTTA TAATAAATTC ACTTCTCTTA CTAAGGTATT
TCTTTAAGCA TTCTCACAAT ACAAATTGTT ATAGCTTTGT ACCTGGTCCA CTTGAAAGTT CAGTTCCAGC TCTACCACTG
CAGGATGCTG GCTTATAGTA CTTTTTTGTT ATCATTTTGT TAAAAATTTA CAATTAATTT GATATTTGGT GTCGAAAGGG
TTTAATATAA ACTAGGGAGT ATATCTTGTT TCATGTGGGT TTTCTTTAGA GTCTAGATAG CATTTAGGGT AAGCATAGAT
TAACACAGCA AATGTTTAGA GGAAATTTAA ATAGTTACTG TAGTTTAAAA GGGAAACATG TCATTTTCAT TATCTAAGGA
GATTATAATC ATAGTCAAAA CAATAGTGCC AAATAGTGAT GCTTAAATGG CAAAACTATA GAATGTTAAA GATAGGCAAT
TACTCCACTT CTATTATCTG GCTTGGCAGT CCTACCTTGA TCTTGCGAAA TTGAATCATT GAGTGTGATT GCAATTGCTG
ATTGTACAAA AGCACAAGTA AAAGTGACAT CATTGTCTCT TTACATTGGC GACCGCTTTT TTGCAATTCA AGTACTGGAC
TGAGGTAACA GATCCTTCGT TGACTGTTGC AATTATCTAT GACATGTTCC GGACATCTTT ATAAAATAAC CATTTTGTGT
GGCGTAATTG AGGATTAATG CGATTTCAAG CTATGATCAT TTTGTCTTTG AGATATGACT TATAAGTATT AATGTTGAAT
ATGTCTTAAG TTTACGATAC TTCTTGATTG TTTAGCATCT TATAAATATG TTAGTTTGTT CAGTATTTGT TATTTAGTGT
AGCGGCTGAA TTGGTCTGTT ATATCATCTT AGCGGCTGAA TTGGAGTTGG CTGTTGATCA AGATCGATTG CTACGATTAA
ATTAAGAAAT TATGTCAGTG CTCTCTGCCT AGTAAAATGA CTTAGATTTA ATAGAGAGGG ATATGCATCC ACTGACCCAG
ATTGACTTCT ATAAGTGGAA TTAAGAAATT AAGAAATTAA GCCACTTTCA AGGCTCAAAT TTAATGGATA GGAGCAAATA
TGAATTTGGG TAGCCCCTGT TGTAAACAAA CCCACCAGTT GGGGACCCAA AGGGGGTGAA AATCTCTTCA CATACGGGGA
TGATGACCAT TATAAATGGA ATTAAGAAAC CCACCAGATT GACTATAATA AATAATTTGC TTTATTATGA CATGGCAAGT
GGTAACTGTG AATTGTGATA GTATAATTTA ATAATTTAAA ATGGATGAAA AAATACTTCT ATATACAGAG TATTTTCTCC
CTGGTTGTCA CAATGAACTT AGCTTCCTTG TGTTAAGTAA CAGGATTTAT ATTTTACTTT AGGTGGCAAG GTTGCAATGG
AAGGGAAAGT AGAACATAAG TTTGATATGA AGCCCCACGG AGAAAACATT GAAGAATATG GTAAATTGTG CCGTGAGAGG
ACAAACAGAT CTATGATTAA AAATCGACAA ATACAGGTAT TTTGTTCAGG TGTATTATTT AATTATCCTA TAACATTTCT
TGCGTTCTGT CTGATTAAAT AATTGATTCT CTTTCTCTGG TTCCCTCGAC TCAATTGGAA GGTTATTGAT AATGATCGAG
GAGTTCTAAT GAGGCCAATG CCCGGAATGA TTGGTCTAGT TTCATCCAAT TCCAAGGTAC ATAATGTGCA CAAAATACAA
TCTCTTGGAC ATGTTAGTAA CGTTCTTTTA ATTGACTCTC TATCTATCAT TTTTTGCCTG CATGAAATTT CTGGCAGAGT
GGAAGTTTTA CGTTAGTTAA TAATTAGAAC AGCCAAGTAT CTTGGCTTTA AAAGCATTTT GATATAGTGC CAGTCATAAA
TCTTAAGCAA TATATATTAG ATAATTATAC CATAGATTCA TGCAATCTCG ATGAAAATTC ACTGGAAAGT TTGGTCCCTC
AAACTTGTGT ATTGCTGGAA AAATTCTGAG GTTTTTTAAT TGCTCATGAA ACTCTCACAG GACAAGAAAA AGACGCAGCC
AATTAAACAA TCTGATACAA AGAGAACAAG AAGAGATCGG GGAGAGCTGG AGGATATAAT GTTCAAGCTA TTTGAAAGAC
AGCCTAACTG GGCCCTGAAA CAGCTTGTCC AAGAGACTGA TCAACCCGCC GTATGCTTTT TTGTTCTTTT TTGAGTTCCT
AACTTTTTGT TGTCGTTGTA GCGCGTGCAC GCACACACTT TCTGCTGCCT GTCCCCCATA CACTGCGCCC CTCTTTTCTT
TTGCAGCAAT ATTTGAAAGC TCCTGAATGG TTGTTACTTT TTCTTTTGCA GCAATTCTTG AAAGAGATTC TGAACGAACT
GTGTGTTTAT AATAAAAGAG GTGCCAATCA AGGAACTTAT GAGCTGAAGC CTGAGTACAA GAAATCTGTT GAAGATACAA
ATGCTGAATG AGTGTTTTAT TCTTTACAGC CTATTATTCT AACTCCATAA ACGAAATTTA GTATCTTTCT CTTAGCTGAG
AAGAGTCAAC ATGTTTAGGG TAAATAGGGT GATCGAAGAA AGAAACTTTG GAGGTCAAAC AACAAGCAAA CAGTGTATCT
GAAGTGTGAA GGATACTTAG CTAATGTATT TTTTATCGAT AAATTGTCAA AAGAGCAGTT CTGTATACCT TCAAAAACGA
ATTTTAGTAA CCGAAAAAAT AAT

>Vigan.02G032100.01
CAAGAAGAGG CTATGTAAAT GCTAAAGTTT CAATACGAGG GGTTGAGCTC GAGGTCAAAT ATAATTGACT TGGGGCGGTG
TCGGTTTCCA GACACGAGCG TGGTTTTCGT TGGTACCTGG AGGAAGCACA GTGAGAGAGA AAGAAAGAGA GAGAGAGAGA
GATGGATGAA GAGAATGGTT ACAGTGGGAG TAGCAGCTCC AATTTGGAGA CTTTGAAGGC GGAGAGATCT GTGTGGTTGA
TGAAATGCCC TTTGGTGGTG GCTAAGTCAT GGCAGACTCA TCCTCCTTCT CAACCCCTCG CTAAGGTCGT CCTCTCCCTC
GATCCTCTCC ACCCTGAAGA AGATCCCTCT GCAGTTCAGT TTACAATGGA GATGGCTGGC TCTGAAGCTG TGAATATGCC
AAAAACTTAT TCATTGAATA TGTTTAAGGA CTTTGTTCCT ATGTGTGTTT TCTCTGAGAC TAGCCAAGGT GGCAAGGTTG
CAATGGAAGG GAAAGTAGAA CATAAGTTTG ATATGAAGCC CCACGGAGAA AACATTGAAG AATATGGTAA ATTGTGCCGT
GAGAGGACAA ACAGATCTAT GATTAAAAAT CGACAAATAC AGGTTATTGA TAATGATCGA GGAGTTCTAA TGAGGCCAAT
GCCCGGAATG ATTGGTCTAG TTTCATCCAA TTCCAAGGAC AAGAAAAAGA CGCAGCCAAT TAAACAATCT GATACAAAGA
GAACAAGAAG AGATCGGGGA GAGCTGGAGG ATATAATGTT CAAGCTATTT GAAAGACAGC CTAACTGGGC CCTGAAACAG
CTTGTCCAAG AGACTGATCA ACCCGCCCAA TTCTTGAAAG AGATTCTGAA CGAACTGTGT GTTTATAATA AAAGAGGTGC
CAATCAAGGA ACTTATGAGC TGAAGCCTGA GTACAAGAAA TCTGTTGAAG ATACAAATGC TGAATGAGTG TTTTATTCTT
TACAGCCTAT TATTCTAACT CCATAAACGA AATTTAGTAT CTTTCTCTTA GCTGAGAAGA GTCAACATGT TTAGGGTAAA
TAGGGTGATC GAAGAAAGAA ACTTTGGAGG TCAAACAACA AGCAAACAGT GTATCTGAAG TGTGAAGGAT ACTTAGCTAA
TGTATTTTTT ATCGATAAAT TGTCAAAAGA GCAGTTCTGT ATACCTTCAA AAACGAATTT TAGTAACCGA AAAAATAAT

>Vigan.02G032100.01
ATGGATGAAG AGAATGGTTA CAGTGGGAGT AGCAGCTCCA ATTTGGAGAC TTTGAAGGCG GAGAGATCTG TGTGGTTGAT
GAAATGCCCT TTGGTGGTGG CTAAGTCATG GCAGACTCAT CCTCCTTCTC AACCCCTCGC TAAGGTCGTC CTCTCCCTCG
ATCCTCTCCA CCCTGAAGAA GATCCCTCTG CAGTTCAGTT TACAATGGAG ATGGCTGGCT CTGAAGCTGT GAATATGCCA
AAAACTTATT CATTGAATAT GTTTAAGGAC TTTGTTCCTA TGTGTGTTTT CTCTGAGACT AGCCAAGGTG GCAAGGTTGC
AATGGAAGGG AAAGTAGAAC ATAAGTTTGA TATGAAGCCC CACGGAGAAA ACATTGAAGA ATATGGTAAA TTGTGCCGTG
AGAGGACAAA CAGATCTATG ATTAAAAATC GACAAATACA GGTTATTGAT AATGATCGAG GAGTTCTAAT GAGGCCAATG
CCCGGAATGA TTGGTCTAGT TTCATCCAAT TCCAAGGACA AGAAAAAGAC GCAGCCAATT AAACAATCTG ATACAAAGAG
AACAAGAAGA GATCGGGGAG AGCTGGAGGA TATAATGTTC AAGCTATTTG AAAGACAGCC TAACTGGGCC CTGAAACAGC
TTGTCCAAGA GACTGATCAA CCCGCCCAAT TCTTGAAAGA GATTCTGAAC GAACTGTGTG TTTATAATAA AAGAGGTGCC
AATCAAGGAA CTTATGAGCT GAAGCCTGAG TACAAGAAAT CTGTTGAAGA TACAAATGCT GAATGA

>Vigan.02G032100.01
MDEENGYSGS SSSNLETLKA ERSVWLMKCP LVVAKSWQTH PPSQPLAKVV LSLDPLHPEE DPSAVQFTME MAGSEAVNMP
KTYSLNMFKD FVPMCVFSET SQGGKVAMEG KVEHKFDMKP HGENIEEYGK LCRERTNRSM IKNRQIQVID NDRGVLMRPM
PGMIGLVSSN SKDKKKTQPI KQSDTKRTRR DRGELEDIMF KLFERQPNWA LKQLVQETDQ PAQFLKEILN ELCVYNKRGA
NQGTYELKPE YKKSVEDTNA E*