GBrowse Details

Vigan.02G020900.01

Basic Information:
Name: Vigan.02G020900.01
Multiple alignment
Variant Information
Position: Chr02:1466259..1471296 (- strand)
Length: 5038
Functional Information:
Description: Similar to Catalase. [P32290, Vigna radiata var. radiata]
GO: Biological Process: response to oxidative stress (GO:0006979)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: catalase activity (GO:0004096)
Molecular Function: heme binding (GO:0020037)
InterPro: Catalase haem-binding site (IPR002226)
Catalase immune-responsive domain (IPR010582)
Catalase core domain (IPR011614)
Catalase, mono-functional, haem-containing (IPR018028)
Catalase-like domain (IPR020835)
Catalase active site (IPR024708)
Catalase, mono-functional, haem-containing, clades 1 and 3 (IPR024711)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1693.90,157.54,136.82,863.94,144.62,116.25,50.89,93.14
Arabidopsis thaliana homolog: AT1G20620.1, AT1G20630.1, AT4G35090.1
Automatic updates:
Name: NM_001253092 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max catalase (CAT5), mRNA.
PubMed ID: 18281324 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr02:1466259..1467243 (- strand)
Length: 985
Type: three_prime_UTR
Position: Chr02:1467244..1467303 (- strand)
Length: 60
Type: CDS
Position: Chr02:1467408..1467501 (- strand)
Length: 94
Type: CDS
Position: Chr02:1467583..1467650 (- strand)
Length: 68
Type: CDS
Position: Chr02:1468159..1468248 (- strand)
Length: 90
Type: CDS
Position: Chr02:1468430..1469206 (- strand)
Length: 777
Type: CDS
Position: Chr02:1469450..1469727 (- strand)
Length: 278
Type: CDS
Position: Chr02:1470752..1470848 (- strand)
Length: 97
Type: CDS
Position: Chr02:1471085..1471099 (- strand)
Length: 15
Type: CDS
Position: Chr02:1471100..1471296 (- strand)
Length: 197
Type: five_prime_UTR

>Vigan.02G020900.01 class=Sequence position=Chr02:1466259..1471296 (- strand)
CAGAAATTCA TTGATAATTA ATAATTATGT TATATTTAAA AAATAAAAGA CAAGTATGAA ATATCAGAAA AGAAAAAGAA
AATAATGTCT TTATAAGGCC GTAAGACTCG CGATTGCCAC ACGAAACGAA ACAGAGTTGC CGTTTTCCTA ATCTCATTCT
CATCCTCTTC TTTCGTCTCT CAGTCTCATC CGTTACCATG GATCCCTACA AGGTATTGCC ATTCGCTATT CTCTTCTTTT
ATTGCCTAAT GTTTTCCGAC TGCACTGCAC CATAGTAAAC TCACCAAATC TTCTTCGGTT TCGCCGTTTC ATTTATCTCA
ACGTGTTCCA TTCTTGATTG TTAACTATAA CTTGTGAACT CTTTGAAATT TGCGCTTCGT GGAGCAATTA CTGTGGTGTG
AATCGGTTAT TAGACTCTGT TTGCTTATTG GTGCTTTGTG TGATGCAGCA CCGGCCATCC AGCGCTTTTA ATTCTCCCTT
CTGGACTACA AATTCTGGTG CTCCTGTTTG GAACAACAAC AACTCTTTAA CTGTTGGAAC TAGAGGTATC GATCCTAGCT
GAAATTTTGC TTAATCACGC ATTTGAATGA TTTCTTGTTT GCTGGAATTG TTCAACTCTA AGTTTTTGTG TGCCAGGGAA
GTATAATCCT GGTAAAATAA TATGATTTTG CTGGCTTTAT TGTGTTCTGA AGGCTATTAG TGCAGGATGT GTGGACCGTG
TGAATGAGTA TGTATAGACT ATAGCTAAGT CTGGTTTTGA TAGTTGGTTA TTTCCCTTGG TAGTTACAGT TCACTGAATA
TTCAGAATGC AACATCTAAG CCATGTTCTG AAAAACTTTT CAACAAGCAT GTATACACTG CTTGCTTTTA GTTCTTGAAT
ATTGGGTTAA ACGTGATCAA GGTCCATGTA CTCTTCTATC TGGTCTTGGA ATTTCTTAAA ATATGTGTAT TTAGATTCTC
CTAACTTTAG AAAGATGTTG AATTTTTAGG AAGGAGGAAG TAAAATCTAT GGAAGAATAA ATTTATCAAT TTTTAAAAAT
ATAGGGATCT TAACCATGTT TAACCAAAAG TATAGACTAA AATCCTTTTT TCCCCGAAAA AAGAGAAAAA AAATGAGCTA
AGTTTCTTCC ATTCGGCATA CGTTAGTTTA TACATTAATT AATTTGTAAA AGTGCTATAA TTTAGTTTTA CCAAAAGTTG
ATTTTATTTA TGCATAAATT AATTTGAGTT TTGTGGGGGA AACTTGTTTA ATTTTCCTTC ATATTTGTTT CCCTTATTAC
GATTTATGAA AAAGTTTATC CAAATAGAAT CCTTCTAGCA TGTATTGATT CTTTGCACTG TTTCTATCAC AGAGATTGTA
TGTCTATGTA GAGTTTAAAC TTTGATTTCA CTTATCTACG TTGCAACTTG TTAGTTACAA TTACGTGGAA AAAGATTACG
AGATTGCGGT CCTTTTTTTT CTATACTTTT GCGAGGGTGC CGATGGGGTG TTGGCTTATT TATGTGTTTG TCACACTGTT
GTATATCTGT AGTGAATGCG AATGAATATT ATTTTATCCA TTTTGGCAGG TCCAATTCTC CTGGAGGATT ATCATCTTGT
TGAAAAGCTT GCAAACTTTG ACAGGGAACG GATCCCAGAG CGTGTTGTCC ATGCCAGGGG TGCTAGTGCA AAGGGTTTCT
TTGAGGTCAC ACATGACGTT TCTCACCTGA CATGTGCAGA TTTCCTTCGA GCTCCTGGAG TTCAGACACC AGTAATTGTC
CGTTTTTCAA CTGTCATCCA TGAGCGTGGT AGCCCTGAAA CTTTGAGGGA CCCTCGAGGT TTTGCTGTGA AATTTTACAC
CAGAGAGGTA TAGATTAATG AACATATTGC ATGTTTAGAA CATGTTTAGG AAATATTTTC CCAAACATTT CAGCTGCTGT
TGTTGAAAAA TATTATGTTT AAAACTAAGC TCATCGTAGA GATAAAACTT AAAATTTTCT TGTACAGGAA CAACTAGAAG
AATCAAATAT TTTGTTTAAC CTTAAAGAAA TATGGCAGTA GTAGTGCTTT GGTATTGTAC ATTAATTCCT AATTTTGCCT
TGTGAAACAG GGTAACTTTG ATCTTGTTGG AAACAACCTT CCCGTCTTCT TTGTACGTGA CGGCATGAAG TTTCCAGATA
TGGTCCATGC TCTTAAACCC AACCCTAAGA ACCACATCCA GGAGAATTGG AGGATCCTTG ACTTCTTCTC TCACTTCCCG
GAAAGCCTTC ACATGTTCTC CTTTTTATTT GATGATTTGG GTGTTCCGCA AGATTACAGG CATATGGATG GTTTTGGAGT
TAACACATAT ACCCTGATCA ACAAGGCTGG GAAAGCACTG TATGTGAAAT TTCACTGGAA GACCACGAGT GGTGTGAAGT
GTCTATTGGA GGAAGAGGCC ATTAAGGTGG GAGGAGCCAA CCATAGCCAT GCTACACAAG ACCTTCATGA TTCGATTGCT
GCTGGTAACT ATCCTGAGTG GAAACTATTC ATTCAGACAA TAGATCCTGA GCACGAAGAC AAATTTGACT TTGACCCTCT
TGATGTAACC AAGACTTGGC CCGAGGACAT TATACCCTTG CAGCCTGTTG GTCGCTTGGT CCTGAATAAG AACATAGATA
ACTTCTTTGC TGAGAATGAG CAACTTGCAT TTTGCCCTGC CATAATAGTT CCTGGTGTAT ATTACTCTGA TGATAAGATG
CTTCAAACCA GGATATTCTC TTATGCTGAT TCACAGAGGC ACAGGCTTGG ACCAAACTAT CTGCAACTTC CTGCCAATGC
TCCCAAGTGT GCTCACCACA ACAATCACCA TGAAGGTTTC ATGAATTTCA TCCACAGGGA TGAGGAGGTA GGTTAAAGTT
TTAACTCTTT ATATTCTCGT ATTTTTTCCT GCATGAAAAG CCGATTGCAT TGTTAACTAA ATTATTGTTG TTAAGTTATT
CACGCACATC CCGATTGGGT GATGTTGCTA TCAATTCTTT AGTTATTATT ACATTTCTTT CTTGGGACTA AATTCTGCCA
ATTTATAGGT CAATTACTTC CCCTCAAGGT ATGATCCTGT TCGTCATGCA GAAAGGTTCC CCATACCTCC TGCTATCTGC
TCTGGAAGGC GTGAAAAGGT TAGATTTTAT CAATTGGGTA ATATGCAAAT GTGGAGCACC TGTTAGCGAA GGAATCCACC
CACCATGAGT TTCAGTTTTG ATTGCATAGT TCCTTTCAGA TTTTGTATGT CTAAGAAACC TAGAGTTATT AATAAAAACT
TCTGAAAATT CAAACTTCAA AGCATTAGTC AAAACGTGTA TTGCTTTGAT ATGTTTTTCT ATTCTAATCT GTTAGACAAA
ATACTGTTGC TGAGCAAATA TGTTGTGTAA ATTGATCTGA CAATAAAGGA AGCAAAGAAG TGGAGTGGAC CCATAACATG
GTTAAATATT TCTTCATTGT AGAAGAAATA AATTACAAGA TTAGGTTGTG TTCTTTTTTA GCATTGCTTT TGGATAGAAG
AGATTAATGC TTTATAAACA AATGACAAGA TTTTGAAAAA CAATAAATAG CTCTGGTAAA ACTGTTGAAA TGCTGACGAA
ATTAATTAGT GCAAGAAAGA ATGAACAACT CTAATTCTTA ATGCAGAATG CAATTGAGAA GGAGAACAAC TTCAAGCAGG
CTGGAGAGAG ATTCCGATCT TGGGCACCTG ACAGGTTCCT GTTATAAACT ACTGATATGA TCAATGCGAA ATATGTTTGG
TGATGTCTAA TGTCGGGTTC CCTATTTCTG TGCAGGCAAG ATAGATTTAT CCGCCGATGG GTTGATGCTT TATCTGACCC
ACGTGTCACT CATGAAATCC GCAGTGTCTG GATATCATAC TGGTCTCAGG TGAGATAATG AGATATAAAC TTTAGACATG
TTAATTTAGC AGTGTATGAA CTACTGGGTA TGGTTTGCTC ACATGATGTT CTTTTCTTGG AATTGTCATG CAGGCTGACC
GTTCTCTTGG CCAAAAGATA GCATCTCATC TGAACATGAG GCCAAATATT TAATGTTGTT ACCAACCCCA GAATGATTGC
AAGAGTTGCA GTCGTGTAAA GAGTACGATA AGAATGTGAT TTTGAAACCT TTGGAAGGAC TAATCCTTTT CTTGCATTAT
TATGTTGTAT AACTCATAGG TCTCCATGCA TGCAACTCGT TGAGCTATCT TGTTGCCGTT TGTGTGTTAG TATTTATTTA
CCTTATCGGC ATGTTTCCCT GCTACTGTTG TGGACTGTGT TCCTCCTAGC TATTCTATTA AGAAAGTATT AAATAAAAAG
AATAACGATA ATTTTAAATC ATTCTAAACT TTTATTACCA TATATACATC TAAGCACATA TGATTCAATT GTTAGGCATA
CTCTGACATG ATCAGCTGGA AATTTACGTC AGAGGCTCAA TGGGTCCAAT GAAGCTGCTT CATATTATTG TTTAAAGGTT
GTTCAAATTC AAAATGAAAA TCGACCAATA ACAAAATGTC AACATGAATT TGTAGGGTGG GTTGTGTTGA TTAGAACTTC
CATTCTTCCT GGCAGATAGC TTTGACCTTA AACTCTTGGT CATCTTCATG CAAACTCGTT TCTTTTATTT TTCTTTTACA
TTTGCCTCTT ATTTAAGCCT CACTGATGAA GTCTATTCCC GTTTATTTAT TTTTGCACAA AATTTAAATA CGATATTTGT
TTAATGTCCT TGTTGTGTTA TGTTTAATAA CAATTGGAGC AACTTTGGAA CAACACTGAA ATTTGTCTCA TACATTTAAA
GTGACACTGA TTGTAATCGA AGACACCAAA AACATCTAAA AAAACTGAAT TTAGGCTTTG TCCTAATTCT CTCTTCTGGT
TGGTGATGAT GAGACCCTTT CATCATCTAT CTTCTCATTT TCTCATTTCA CCGTTTTCAT TTACCCCTTG CAAGTATTCT
CTTAAAATAT TGAAGAATCT CTCAAGCTCA TCTATTTTGT TATTTATTTA TTATGCAACT CTGATAATTC TATGAAGC

>Vigan.02G020900.01
CAGAAATTCA TTGATAATTA ATAATTATGT TATATTTAAA AAATAAAAGA CAAGTATGAA ATATCAGAAA AGAAAAAGAA
AATAATGTCT TTATAAGGCC GTAAGACTCG CGATTGCCAC ACGAAACGAA ACAGAGTTGC CGTTTTCCTA ATCTCATTCT
CATCCTCTTC TTTCGTCTCT CAGTCTCATC CGTTACCATG GATCCCTACA AGCACCGGCC ATCCAGCGCT TTTAATTCTC
CCTTCTGGAC TACAAATTCT GGTGCTCCTG TTTGGAACAA CAACAACTCT TTAACTGTTG GAACTAGAGG TCCAATTCTC
CTGGAGGATT ATCATCTTGT TGAAAAGCTT GCAAACTTTG ACAGGGAACG GATCCCAGAG CGTGTTGTCC ATGCCAGGGG
TGCTAGTGCA AAGGGTTTCT TTGAGGTCAC ACATGACGTT TCTCACCTGA CATGTGCAGA TTTCCTTCGA GCTCCTGGAG
TTCAGACACC AGTAATTGTC CGTTTTTCAA CTGTCATCCA TGAGCGTGGT AGCCCTGAAA CTTTGAGGGA CCCTCGAGGT
TTTGCTGTGA AATTTTACAC CAGAGAGGGT AACTTTGATC TTGTTGGAAA CAACCTTCCC GTCTTCTTTG TACGTGACGG
CATGAAGTTT CCAGATATGG TCCATGCTCT TAAACCCAAC CCTAAGAACC ACATCCAGGA GAATTGGAGG ATCCTTGACT
TCTTCTCTCA CTTCCCGGAA AGCCTTCACA TGTTCTCCTT TTTATTTGAT GATTTGGGTG TTCCGCAAGA TTACAGGCAT
ATGGATGGTT TTGGAGTTAA CACATATACC CTGATCAACA AGGCTGGGAA AGCACTGTAT GTGAAATTTC ACTGGAAGAC
CACGAGTGGT GTGAAGTGTC TATTGGAGGA AGAGGCCATT AAGGTGGGAG GAGCCAACCA TAGCCATGCT ACACAAGACC
TTCATGATTC GATTGCTGCT GGTAACTATC CTGAGTGGAA ACTATTCATT CAGACAATAG ATCCTGAGCA CGAAGACAAA
TTTGACTTTG ACCCTCTTGA TGTAACCAAG ACTTGGCCCG AGGACATTAT ACCCTTGCAG CCTGTTGGTC GCTTGGTCCT
GAATAAGAAC ATAGATAACT TCTTTGCTGA GAATGAGCAA CTTGCATTTT GCCCTGCCAT AATAGTTCCT GGTGTATATT
ACTCTGATGA TAAGATGCTT CAAACCAGGA TATTCTCTTA TGCTGATTCA CAGAGGCACA GGCTTGGACC AAACTATCTG
CAACTTCCTG CCAATGCTCC CAAGTGTGCT CACCACAACA ATCACCATGA AGGTTTCATG AATTTCATCC ACAGGGATGA
GGAGGTCAAT TACTTCCCCT CAAGGTATGA TCCTGTTCGT CATGCAGAAA GGTTCCCCAT ACCTCCTGCT ATCTGCTCTG
GAAGGCGTGA AAAGAATGCA ATTGAGAAGG AGAACAACTT CAAGCAGGCT GGAGAGAGAT TCCGATCTTG GGCACCTGAC
AGGCAAGATA GATTTATCCG CCGATGGGTT GATGCTTTAT CTGACCCACG TGTCACTCAT GAAATCCGCA GTGTCTGGAT
ATCATACTGG TCTCAGGCTG ACCGTTCTCT TGGCCAAAAG ATAGCATCTC ATCTGAACAT GAGGCCAAAT ATTTAATGTT
GTTACCAACC CCAGAATGAT TGCAAGAGTT GCAGTCGTGT AAAGAGTACG ATAAGAATGT GATTTTGAAA CCTTTGGAAG
GACTAATCCT TTTCTTGCAT TATTATGTTG TATAACTCAT AGGTCTCCAT GCATGCAACT CGTTGAGCTA TCTTGTTGCC
GTTTGTGTGT TAGTATTTAT TTACCTTATC GGCATGTTTC CCTGCTACTG TTGTGGACTG TGTTCCTCCT AGCTATTCTA
TTAAGAAAGT ATTAAATAAA AAGAATAACG ATAATTTTAA ATCATTCTAA ACTTTTATTA CCATATATAC ATCTAAGCAC
ATATGATTCA ATTGTTAGGC ATACTCTGAC ATGATCAGCT GGAAATTTAC GTCAGAGGCT CAATGGGTCC AATGAAGCTG
CTTCATATTA TTGTTTAAAG GTTGTTCAAA TTCAAAATGA AAATCGACCA ATAACAAAAT GTCAACATGA ATTTGTAGGG
TGGGTTGTGT TGATTAGAAC TTCCATTCTT CCTGGCAGAT AGCTTTGACC TTAAACTCTT GGTCATCTTC ATGCAAACTC
GTTTCTTTTA TTTTTCTTTT ACATTTGCCT CTTATTTAAG CCTCACTGAT GAAGTCTATT CCCGTTTATT TATTTTTGCA
CAAAATTTAA ATACGATATT TGTTTAATGT CCTTGTTGTG TTATGTTTAA TAACAATTGG AGCAACTTTG GAACAACACT
GAAATTTGTC TCATACATTT AAAGTGACAC TGATTGTAAT CGAAGACACC AAAAACATCT AAAAAAACTG AATTTAGGCT
TTGTCCTAAT TCTCTCTTCT GGTTGGTGAT GATGAGACCC TTTCATCATC TATCTTCTCA TTTTCTCATT TCACCGTTTT
CATTTACCCC TTGCAAGTAT TCTCTTAAAA TATTGAAGAA TCTCTCAAGC TCATCTATTT TGTTATTTAT TTATTATGCA
ACTCTGATAA TTCTATGAAG C

>Vigan.02G020900.01
ATGGATCCCT ACAAGCACCG GCCATCCAGC GCTTTTAATT CTCCCTTCTG GACTACAAAT TCTGGTGCTC CTGTTTGGAA
CAACAACAAC TCTTTAACTG TTGGAACTAG AGGTCCAATT CTCCTGGAGG ATTATCATCT TGTTGAAAAG CTTGCAAACT
TTGACAGGGA ACGGATCCCA GAGCGTGTTG TCCATGCCAG GGGTGCTAGT GCAAAGGGTT TCTTTGAGGT CACACATGAC
GTTTCTCACC TGACATGTGC AGATTTCCTT CGAGCTCCTG GAGTTCAGAC ACCAGTAATT GTCCGTTTTT CAACTGTCAT
CCATGAGCGT GGTAGCCCTG AAACTTTGAG GGACCCTCGA GGTTTTGCTG TGAAATTTTA CACCAGAGAG GGTAACTTTG
ATCTTGTTGG AAACAACCTT CCCGTCTTCT TTGTACGTGA CGGCATGAAG TTTCCAGATA TGGTCCATGC TCTTAAACCC
AACCCTAAGA ACCACATCCA GGAGAATTGG AGGATCCTTG ACTTCTTCTC TCACTTCCCG GAAAGCCTTC ACATGTTCTC
CTTTTTATTT GATGATTTGG GTGTTCCGCA AGATTACAGG CATATGGATG GTTTTGGAGT TAACACATAT ACCCTGATCA
ACAAGGCTGG GAAAGCACTG TATGTGAAAT TTCACTGGAA GACCACGAGT GGTGTGAAGT GTCTATTGGA GGAAGAGGCC
ATTAAGGTGG GAGGAGCCAA CCATAGCCAT GCTACACAAG ACCTTCATGA TTCGATTGCT GCTGGTAACT ATCCTGAGTG
GAAACTATTC ATTCAGACAA TAGATCCTGA GCACGAAGAC AAATTTGACT TTGACCCTCT TGATGTAACC AAGACTTGGC
CCGAGGACAT TATACCCTTG CAGCCTGTTG GTCGCTTGGT CCTGAATAAG AACATAGATA ACTTCTTTGC TGAGAATGAG
CAACTTGCAT TTTGCCCTGC CATAATAGTT CCTGGTGTAT ATTACTCTGA TGATAAGATG CTTCAAACCA GGATATTCTC
TTATGCTGAT TCACAGAGGC ACAGGCTTGG ACCAAACTAT CTGCAACTTC CTGCCAATGC TCCCAAGTGT GCTCACCACA
ACAATCACCA TGAAGGTTTC ATGAATTTCA TCCACAGGGA TGAGGAGGTC AATTACTTCC CCTCAAGGTA TGATCCTGTT
CGTCATGCAG AAAGGTTCCC CATACCTCCT GCTATCTGCT CTGGAAGGCG TGAAAAGAAT GCAATTGAGA AGGAGAACAA
CTTCAAGCAG GCTGGAGAGA GATTCCGATC TTGGGCACCT GACAGGCAAG ATAGATTTAT CCGCCGATGG GTTGATGCTT
TATCTGACCC ACGTGTCACT CATGAAATCC GCAGTGTCTG GATATCATAC TGGTCTCAGG CTGACCGTTC TCTTGGCCAA
AAGATAGCAT CTCATCTGAA CATGAGGCCA AATATTTAA

>Vigan.02G020900.01
MDPYKHRPSS AFNSPFWTTN SGAPVWNNNN SLTVGTRGPI LLEDYHLVEK LANFDRERIP ERVVHARGAS AKGFFEVTHD
VSHLTCADFL RAPGVQTPVI VRFSTVIHER GSPETLRDPR GFAVKFYTRE GNFDLVGNNL PVFFVRDGMK FPDMVHALKP
NPKNHIQENW RILDFFSHFP ESLHMFSFLF DDLGVPQDYR HMDGFGVNTY TLINKAGKAL YVKFHWKTTS GVKCLLEEEA
IKVGGANHSH ATQDLHDSIA AGNYPEWKLF IQTIDPEHED KFDFDPLDVT KTWPEDIIPL QPVGRLVLNK NIDNFFAENE
QLAFCPAIIV PGVYYSDDKM LQTRIFSYAD SQRHRLGPNY LQLPANAPKC AHHNNHHEGF MNFIHRDEEV NYFPSRYDPV
RHAERFPIPP AICSGRREKN AIEKENNFKQ AGERFRSWAP DRQDRFIRRW VDALSDPRVT HEIRSVWISY WSQADRSLGQ
KIASHLNMRP NI*