GBrowse Details

Vigan.02G010000.01

Basic Information:
Name: Vigan.02G010000.01
Multiple alignment
Variant Information
Position: Chr02:696541..702112 (+ strand)
Length: 5572
Functional Information:
Description: Similar to Uncharacterized protein. [I1K738, Glycine max]
GO: Molecular Function: DNA binding (GO:0003677)
Molecular Function: protein binding (GO:0005515)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: Bromo adjacent homology (BAH) domain (IPR001025)
Zinc finger, PHD-type (IPR001965)
Zinc finger, FYVE/PHD-type (IPR011011)
Zinc finger, RING/FYVE/PHD-type (IPR013083)
Zinc finger, PHD-type, conserved site (IPR019786)
Zinc finger, PHD-finger (IPR019787)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:93.85,80.81,28.43,39.60,42.81,49.25,36.88,34.84
Arabidopsis thaliana homolog: AT4G39100.1
Automatic updates:
Name: NM_001249165 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100526926 (LOC100526926), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:696541..696711 (+ strand)
Length: 171
Type: five_prime_UTR
Position: Chr02:696712..696784 (+ strand)
Length: 73
Type: CDS
Position: Chr02:696918..697263 (+ strand)
Length: 346
Type: CDS
Position: Chr02:697642..697710 (+ strand)
Length: 69
Type: CDS
Position: Chr02:700972..701107 (+ strand)
Length: 136
Type: CDS
Position: Chr02:701737..701766 (+ strand)
Length: 30
Type: CDS
Position: Chr02:701767..702112 (+ strand)
Length: 346
Type: three_prime_UTR

>Vigan.02G010000.01 class=Sequence position=Chr02:696541..702112 (+ strand)
GTGTACTCGC ATTTCAATGA AGGCTGAGAT AAAAGTCGCC CCACCATTAA CCATGGTTCA GCGCAGCACT GAAACAAAAA
ATTAATAAAC CCTTACATGT AAAAAAACAT AATATTTTTC TGTATTTTAT TCATCCTCAA TCTTCTACAT CCTGTGCTTC
CATTCCATCT CATGGCTAAG CCGAAGGCTC CAAGACGAAC CCTAGAGTCA TACTCAGTCA AACACATAAG CAAAACCATT
AGAGGTAAAC TCACTTTCTA TTTCTCACAA AACAATTTTG ACAAAAAATT ATTGGATTAA ATCAGACTAA TTTTGTTTTG
TGCTAGCTCC ATTTTGCTTT CCTCAATCCA AAGGCTCTTT TTGTTGTTGT CTCTCAGCTG CTGATTGCGT GCTCATGCGA
CCGTCGGATC CGGCTAAACC CTCATATGTG GCCAGGATCG AAAGGATCGA GGCGGATGCG CGTGGCGCAA ATGTGAAAAT
TCATGTTCGC TGGTACTACA GGCCAGAGGA GTCAATTGGG GGTCGCCGTC AGTTTCATGG CTCAAAGGAG GTTTTTCTCT
CTGATCACTT TGATGTTCAG AGCACCGACA CAATCGAAGG CAAGTGTACC GTCCACAGCT TCAAGAGCTA CACAAAACTG
GATGCGGTTG GTAACGATGA TTTCTTCTGT CGGTTTGAGT ACAATTCCTC CACAGGTGCC TTCAATCCTG ATAGAGTTGC
AGTGTGAGTC TACCACTTTT ATTTTAGATG CTCAGATATA TTTTCTATTG TAGTCTCTGC TGCCCTAGTT TCAAAATTTG
TTTGATTTTT GGTAAAATTT CTTGTTGGAA TGAATGGACT TTCTCTCTTT ATTTTACTTA GCTGCCATCA ATTTCGAAAC
TTAACTTAAT GGCAAATTCT AAGTTTCTGT TGGTTAGTCT GGTAATGGCT CAGATTACGG GATTATTCTA TAATATATTT
ACTCGGTTTA TGTTATTAGG ATTTTATATG TTGAGTTGGA AATGGTAAGC ATTGACTTTT TGTTAGATTC GAGAAGCTGT
GAGATCTTTC TTGAATTCTG CTGACTCTGC CTGATAGAAG TTGTTTAAAA TTTCATTGCA GGTATTGTAA ATGTGAGATG
CCTTACAATC CTGATGACCT AATGGTCCAA TGTGAGGGCT GCAGTGACTG GTAAGTAAAA TATTTAAAGT GATTTATCAT
TAAATTATCG GCCTTCCCTC TTATCCTGAT CTATGTAAGA TGTCTGTTTG ATTTTGTGAA GACTGGAATG TTCAGTTCTT
TGAATATCTT GCATTGTTCT GATGGAACTT TCAGTTCTAT TTGTCCTTTG TCCTTTTTTT TTTCCTTTGC TGTATCATTT
GAAAAGAGTA TTTTAAATCA GCAGTAACTA TGCAGACATC ATTTTGCCTT GTATGTCACT TTTCACTTGG ACTATTCTTC
ACTGTAAACA GCCAGTGTTA TCTATATTGG TCTGCTGTGC AGTTTTTTTC AACCTGTTTT TTTTTTTTGC TTTTGACTAG
GCTGTGGGTG ATTTCTACCC TACCCTTCTC ATTTCTCTTT AAATGGTTAC TTATTTATGC ATATACTTAT ATTCAAAGTT
ATCAAACTTG CAATTTAACT GGTAAAATTG CTCGAGTTTA TTCTCAAATG CATAATCGGT TTCACGGAAC TCAGTAGGAT
CATTGGGGTA GATCGTGTAT TCTTTTTCCT GATTGATGTC TTCGTCCACA ATGCCAGTTA AAATTTATAC AATCAAGGTC
ATTCTTGATT AATTTCTCCT TTATAGTTAG TTTACTAAAA CTAACTAAGA ATTAACCTTT ATACACTAAA GAAATGATAA
GACCTCCAAC TATGTTAAAC TTCTGCATAA AATGTGTTTA TCACATACTC AAATGAATTC TGCCAAACTC ACGAGTTCAA
CCCCAAGTTG GGTGAAATCA TGTGAGCTTA AATATTAAAT GAATCACCAG TATTCAATTG TAAGTTGGTG AAACAGAGTG
GTCCTTTGGC GCTGGTAAGG CACCAGTGAC CGAGCACATG GATGTAAAGG TGTCATTTCC ATGATTTGCA GGCTTCTGTA
TGTGCTTTTA ACAGACAAGG CTCTGCGACC TTTGCCATTG CAGAGCATGG CATTGCATGT TCACTATCAC TATCACCGAC
TGCCACCGTG ACCTCACACT CCTCTGCATT CTCTTGAATG TTTGGGGCGG CTCTAGTTAA TGGGCAGCTG ATGAGCCAGG
TCATACTTAG GGTTTCAATG TTTTAGTTTG AATCCAACAA CTTTTTCTTT TGTTTTTATG AAAACGTAAC AAAATATAAT
AAACTAAATA ATACTAATAA TTCCAAAATA AAGTGTAATA AATATATAGT AATATAATAA AAGTATAGAA TATAATAAAA
AATATGATAT TATTGCAAAG TATGAACAAA TATTTAAAGC ATAATGTTGT ATGCACTTAT GCCACATTTT TTAGTTGGTA
TTGATTAAAC TTGCTTACCA GTAATGCAAT ACTAGATTTA GCTACTTCGT TGCCGGATTC AAAACATCCA ATTATTACGT
TATTTATAGA CATATATGAA GTAAATTCTT ATGGAATTTA TGGAGCTGCC CACACATTGC GTATATTCAT GGATTGTTGC
ATGCATTTAA GTGTTATGCA ACCGTTTTTG TGTTGGTTAT TGACATCTGG GTCGTAGCTT AAGAGAACTA AGTTTCTTTT
AATTATAACT ATTTGTACTT GTTCTTGGCC ATATAAGTAA GATCGAGATG GAACCTAAAG CAAACAATAC TTTAGTTGGC
CATGTTATTC GTCTTTCTTA ATTTGGCAAA CCATGTCATC AGCCACTGAT AAGGTGTTTC ATTAATTTCT TATTTCTTTC
CTTATTGTGG TTATCTACTA TAGTATAGAC AATTATCAAA GCTACCTTGT TTCAGGAATT TCATATCTTG TCTAAAATAT
GGTAACAAAT TCATCAAAAA AGATCATGCA CTTGAATTCA TTATTGTACT TTAGTGCTTC CACTCTTCAT GTATGCATGC
AGTGACACTC AAGTTAACGT GCCAAATTCA TAGCATAAAT CTGATGTTCC CTATAAATAT TTGTCTGAGT TGATAAAACA
TGGTTAAACC ATTGTAGTCA ATAGCATACT ATAGCACAGT GGGGGAGCGG CCCTAATGGG ATTCAAATAG ACGCAAAACC
TGTGGCTATT GATGACCAAG ATTTTCAAAC TCGTGGGACT TTCATATACT TACTCTTCGA TTCAACTTAT AAACTCATAA
GAATTTACCT AAAATAAATC TGTTAATGAC ATATATGCAT AAAAGAATAC TCTTAATACA ACAATAATGT AACTTTTCAA
CTTCACAAGA AAGGTAGCAA ATCACAACAG TAAAGTATGA TATATAGTAC ATTCATTAGT ACCCAATAAA CTTGATGACT
AAACCAAAAC TCATAAAAAC ATAAGTTGTG GGTGTAATGA TTCATTCAAA ACCTACATTT AGTACCACAC TCGTTCCTCA
TTTCTTGATT GGAGATTTAT GTGAGTTTGC ACCAGTTTTA AGAATTTACC GAGGTTAATC AGAAAAGAGT TCAATAGCGA
GTTAACTTAA TTTTTTTCTA TTTAGGATCG TACACTCAAG AGTTTGATAA CCTTGTTCAT GGGAAGCAAC ACTGTTCAGG
TTTTTTAAGT GTAAAATTGC AATTTCTCCC CCATTTTCTA ATGTGTCTTT TGCTTTTAAA AAGTAGGATT TGAACTCTTC
TTCCTTGCCC ATTGCTGCAT TGCATAAGAA AGTTACCTTT GTATTGACAT TTTTTCCTTC ATATTTTATA AGACTTTTTT
TCCCAGTGTT TCTTTCATGT TTTTGCTTTA AGCTTCATTC TGCTAATTTT AATCTAATAT GTTATGTTCT TTTTATACGG
ATAGTGAATG TACGATAAAA TCCATGTGCA TAATTATTCC ACTGGCAATT CAAACAGTAG CACGTCCACA AACTAGCTAA
GCAATAGCCT TTAGATTGGA CGTGATGATC AACTAATTAG TTCATGCAAC GACTGAATTA AATTCCTGAA ACCTTAGTCT
TAAAGGAAGA GAACATAACT TTTATTCATA GCAAATTTGT TATCCTCGTC AGTCTTACTA TGGAACTAAC TAAAGAGCTG
CTTTGAATGT TGAGATGTTT TCCATATTGT TATTGGAGGC ACAATAAATA TGTAAGGTTT ACTAGTAAGC CATTTTTAAG
AATGGGCTTT TGAGATCTAG GGCCATTTAG TTTGTTTTAT AAACCATGAT GAATAGAAGA TTTTTGACTT CGATACCTCT
AAAATTAACA TATTTGTGCA TTGAAAATAA CTTGTTTTGC AACACGTGCC ATTATTTTGT GGATATCGGG CTGCGTGAAT
ATAGTCTTCA GCAGGATAAT TTATTTTTCA GGTTCCATCC TGCTTGCATA GACATGACTG TTGAAGAAGC CAAAAGACTT
GACCACTTCT TTTGTGAAAG CTGCTCTGCC GAAGGTCAAA AAAAGTTGCA GAACTCTCAT TCCGCTTCTA GACTCTCGGA
TACAAAGGTA TTTCAAATAA TTGTTATTTG ATAACGTGAG TTGTTTTCAC TTTTCATAAC TTTATACCAT TGAATCGACT
CACCGAGGCT TTGGAGAGGT TTATACTTCA TCTATCATCT ATTGGTTTGC TAAATTCTAT TCTATTGTCA AATGATTATA
TCCTCAATAT CCTGTGATTC ATGGTCACAT GCGCATCAGT TGGTTCATTT GTATGTAGGA AGTCACCAAT TGAGTAAGAG
AATGAGTGCC ATTGCAAATT AATATTTCTT TTGTTAAATA ACAAAAAGTT TTTGTGACTG ACATGCATTC GGTATTTCGT
ATCTTTTTCC AATCCTTTTT TGCTTAAATT AACGTTTCTT TCTGGTTAAT GTGATTTTTA GGACTTCCTT TAGTATGGCT
TTAATGCCTA AGGACAGTGC CACCATTTTA TTTGTGCTAA ACATTTATAC CTGCCATGAT ATTTCACATA AAAATTATCA
GTTTTGACCA CCCAAATAGT GTAGATATCT GGATTCTTCT TCTTAGGCAC TGCCATGGAA TAACATTAAT CTGTTATTGT
TGAAGTTGAA TGGTATTGGT CTGAAAAAAG GAAGGATTGA TGTATTAATA TGTGTGTGTT GCTTGGTATT GTGCAGGTGG
ACACTAAACG CCGTCGTAGG CAATAGTGTG ATAGTATATA AAGCATGATA AAATGAGTTA GATATGTAAT GAATGTACTG
GAGAACTTGG ATTCCTAATC CTGGGTAGGG GCCGGACAAA GACGGAGACA AAGTTATGTT GTTCTATGTT GTAGTCGTTC
ACTTTCGCAT GGAAAGAGAC TAGTTTGGAA ACTTGTCATG TGTATTTGGT TGGAGGACAA ATGCAGTTTC CTTTGAAGTG
GAGGACGTGT TTATGTAATT ATATAGTGTA GATTCTGTCT CTTCTTTCTG GTCCTTGTTC TGAGTCGGAT GAACTTTTGT
AAAGTATTTT ACTTATTTAT GAGAGCAGTA GACACTCAAT TCTTTCTTTG TA

>Vigan.02G010000.01
GTGTACTCGC ATTTCAATGA AGGCTGAGAT AAAAGTCGCC CCACCATTAA CCATGGTTCA GCGCAGCACT GAAACAAAAA
ATTAATAAAC CCTTACATGT AAAAAAACAT AATATTTTTC TGTATTTTAT TCATCCTCAA TCTTCTACAT CCTGTGCTTC
CATTCCATCT CATGGCTAAG CCGAAGGCTC CAAGACGAAC CCTAGAGTCA TACTCAGTCA AACACATAAG CAAAACCATT
AGAGCTGCTG ATTGCGTGCT CATGCGACCG TCGGATCCGG CTAAACCCTC ATATGTGGCC AGGATCGAAA GGATCGAGGC
GGATGCGCGT GGCGCAAATG TGAAAATTCA TGTTCGCTGG TACTACAGGC CAGAGGAGTC AATTGGGGGT CGCCGTCAGT
TTCATGGCTC AAAGGAGGTT TTTCTCTCTG ATCACTTTGA TGTTCAGAGC ACCGACACAA TCGAAGGCAA GTGTACCGTC
CACAGCTTCA AGAGCTACAC AAAACTGGAT GCGGTTGGTA ACGATGATTT CTTCTGTCGG TTTGAGTACA ATTCCTCCAC
AGGTGCCTTC AATCCTGATA GAGTTGCAGT GTATTGTAAA TGTGAGATGC CTTACAATCC TGATGACCTA ATGGTCCAAT
GTGAGGGCTG CAGTGACTGG TTCCATCCTG CTTGCATAGA CATGACTGTT GAAGAAGCCA AAAGACTTGA CCACTTCTTT
TGTGAAAGCT GCTCTGCCGA AGGTCAAAAA AAGTTGCAGA ACTCTCATTC CGCTTCTAGA CTCTCGGATA CAAAGGTGGA
CACTAAACGC CGTCGTAGGC AATAGTGTGA TAGTATATAA AGCATGATAA AATGAGTTAG ATATGTAATG AATGTACTGG
AGAACTTGGA TTCCTAATCC TGGGTAGGGG CCGGACAAAG ACGGAGACAA AGTTATGTTG TTCTATGTTG TAGTCGTTCA
CTTTCGCATG GAAAGAGACT AGTTTGGAAA CTTGTCATGT GTATTTGGTT GGAGGACAAA TGCAGTTTCC TTTGAAGTGG
AGGACGTGTT TATGTAATTA TATAGTGTAG ATTCTGTCTC TTCTTTCTGG TCCTTGTTCT GAGTCGGATG AACTTTTGTA
AAGTATTTTA CTTATTTATG AGAGCAGTAG ACACTCAATT CTTTCTTTGT A

>Vigan.02G010000.01
ATGGCTAAGC CGAAGGCTCC AAGACGAACC CTAGAGTCAT ACTCAGTCAA ACACATAAGC AAAACCATTA GAGCTGCTGA
TTGCGTGCTC ATGCGACCGT CGGATCCGGC TAAACCCTCA TATGTGGCCA GGATCGAAAG GATCGAGGCG GATGCGCGTG
GCGCAAATGT GAAAATTCAT GTTCGCTGGT ACTACAGGCC AGAGGAGTCA ATTGGGGGTC GCCGTCAGTT TCATGGCTCA
AAGGAGGTTT TTCTCTCTGA TCACTTTGAT GTTCAGAGCA CCGACACAAT CGAAGGCAAG TGTACCGTCC ACAGCTTCAA
GAGCTACACA AAACTGGATG CGGTTGGTAA CGATGATTTC TTCTGTCGGT TTGAGTACAA TTCCTCCACA GGTGCCTTCA
ATCCTGATAG AGTTGCAGTG TATTGTAAAT GTGAGATGCC TTACAATCCT GATGACCTAA TGGTCCAATG TGAGGGCTGC
AGTGACTGGT TCCATCCTGC TTGCATAGAC ATGACTGTTG AAGAAGCCAA AAGACTTGAC CACTTCTTTT GTGAAAGCTG
CTCTGCCGAA GGTCAAAAAA AGTTGCAGAA CTCTCATTCC GCTTCTAGAC TCTCGGATAC AAAGGTGGAC ACTAAACGCC
GTCGTAGGCA ATAG

>Vigan.02G010000.01
MAKPKAPRRT LESYSVKHIS KTIRAADCVL MRPSDPAKPS YVARIERIEA DARGANVKIH VRWYYRPEES IGGRRQFHGS
KEVFLSDHFD VQSTDTIEGK CTVHSFKSYT KLDAVGNDDF FCRFEYNSST GAFNPDRVAV YCKCEMPYNP DDLMVQCEGC
SDWFHPACID MTVEEAKRLD HFFCESCSAE GQKKLQNSHS ASRLSDTKVD TKRRRRQ*