GBrowse Details

Vigan.01G547100.01

Basic Information:
Name: Vigan.01G547100.01
Multiple alignment
Variant Information
Position: Chr01:66626020..66628380 (- strand)
Length: 2361
Functional Information:
Description: Similar to Uncharacterized protein. [I1MR47, Glycine max]
GO: Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, RanBP2-type (IPR001876)
Endonuclease/exonuclease/phosphatase (IPR005135)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.20,8.34,3.34,1.96,9.31,4.72,1.63,2.52
Arabidopsis thaliana homolog: AT1G11800.1
Automatic updates:
Name: NM_001255573 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max tyrosyl-DNA phosphodiesterase 2-like (LOC100776602), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:66626020..66626269 (- strand)
Length: 250
Type: three_prime_UTR
Position: Chr01:66626270..66626854 (- strand)
Length: 585
Type: CDS
Position: Chr01:66627300..66627410 (- strand)
Length: 111
Type: CDS
Position: Chr01:66627504..66627649 (- strand)
Length: 146
Type: CDS
Position: Chr01:66627730..66628228 (- strand)
Length: 499
Type: CDS
Position: Chr01:66628229..66628380 (- strand)
Length: 152
Type: five_prime_UTR

>Vigan.01G547100.01 class=Sequence position=Chr01:66626020..66628380 (- strand)
ATCGAACCTT TTTACAAATT TTTTAGCTTC ATTTTTTTAC TATTTTTTTT AGCTCATTTT TACTCGACAC TCGACACTCG
ACGTACGGCT TGTAATGTTG CCGTTTTAAC CTTTTTCAAA GCGTTGCGTT TTGATAGTCG TTCAAAAACG GCATGAAATT
TGAAATGCCT CTTCGATTAC TCTTCTCTTC ACTTGCTTCA TCATCGTTTC TGATAAACCC TAGAAAATTT GGATCGGTTC
GCATTTCATC TCCGATGTCT TGGGCCTGCA AAAAATGCAC TTTCGTGAAC CCTCCTTCTC AAAAGCGGGA GTGCGAAATC
TGCTTGTCCC CCGCGTCCCC AAGCGGTCCT TCTTCTTCGT CTTCGTCGCC CCCGAAATGG TCGTGCAAGG CTTGCACTTT
CTTAAACCCT TACAACAACC CCTCTTGCGA AGTCTGCGCT ACTCGATGCC CCGTTCTCTC CCTTTCCCAT CTCGACGACT
TGACTGACGC CACTGACGGC GATTCTTCCG TTGGCTCTGT TTTCTTCCCT CTTCGACCCT GCAACAAAAG AAAGGCCATC
CATGAAGTTC ATGTTGTCGA GGATGATGAT GATACTTCAA AGAAGGTTAA GCTGTTCAAT AAGGCTACAC CTACACGTAC
CACCGGCGAT GGTGAGCGTC TTTTTATGCG TTTCTATTTT TTGTAATGTC TGCAAAATAC GTGCTTTATG AAATGCTATT
GTATGTTGCA GATAATGCGG AGTCGGGAAA AGCTTTTAGT ACGTTTAAGA TACTGAGTTA CAATGTCTGG TTCCGGGAAG
ATTTGGAGTT GCAGAAGAGG ATGGAGGCTA TTGGTGATCT TGTTCAGTTG CATTTCCCTG ACTTTATCTG CTTCCAGGTT
TCAATATTTG TGCTCCTAGC TGTCTTTCTT ATTTGATGAC TTTTTTTGAA GTTTTGTCGC TTTCTGTAAT TTGGACCGCT
GCCGCCTCAG GAGGTGACTC CCAATATATA TGACATATTC AAGCAATCCA CGTGGTGGAG TGTGTACCGT TGCTCGGTTT
CTTCTGAGAT GGCTTATTCA AGACCATACT TCTGTATGGT GGTAAGTTTG ATATCTTTAA ACCTTTGCCT CTATTGATAC
ATACTTGTTC GGTGTGTTCT AGACTGGACC CCTTTATATC CCATGTGCTG CATTTATTTT GATGACCTGG ATATTACTTC
ACGGTAAATA TGTCGCCATT TTTTGTGTGC TTGGCACGAG TTTTTTTTTG CTAACATGCA GTTTATTCAT AGGTTTTGAA
AGTAGGAACA AATCTGTTCA TAGGGTCATA TTGATAAATC TGTGCTGATA CGTTATAATA GTTATAGTAA TCGTGATTGT
CTATCCTTTG AACTTCTTGT TGCTGGTTTG TCATTAATGG CTTGTCTGCA TTTAGCTAGA AGTTATTTTT TACAGTTGTT
GGAGGTTATA TTTACTTTTA AGTGAGCATT TTATTTGGCG AAGAGGTAGT TTATGTTTTC TGGTATACCT GTGTACGCAA
TTGCAGCTAA GCAAACTGCC TGTTAAGTCT TTCTGCAACA AGCCCTTCAG CAATTCCGTT ATGGGAAGAG AACTTTGCAT
TGCCGAAGTT GAAGCTGAAA GTGGCAAGTC ATTGGTTATT GCCACTAGCC ATCTTGAGAG TCCCTGTCCA GGCCCCCCCA
AATGGGATCA GATGTTCAGC AAGGAAAGAG TAGTTCAGGC CAATGAGGCT TTAAACCTTC TCGATAATAA GCCAAATGTT
GTTTTTGGAG GTGACATGAA CTGGGATGAT AAAGGTGATG GCCAATATCC GTTGCAAGGT GGATGGATTG ATGCCTGGGC
TCAACTAAGG CCAAATGAAA GTGGTTGGAC TTATGACACC AAGACGAACC AGATGTTGAC AGGCAACCGT ACTCTCCAAA
AGCGACTAGA TCGCTTCATT TGTCATTTAA CTGATTTTAA GATAATTAGT GTTGACATGA TTGGGATGGA AGTAATACCT
GGTCTTTCAT ACAACAAAGA GAAGAAAGTA AGAAATGAGA TCAAACAACT GGTACTTCCA GTTTTGCCTA GTGATCATTA
TGGTCTGCTT TTGACAATTT CTAGTGTGTA ATTGCCTGTC TGGAGAATCT GGCTGTCCGG TGAACCCTTT GTTTTGATGT
TCTCACTCTC TTACCGATTC TGTATCTTAG GCATGTTTTG CATGCAATTT TGTACAGATT ACATGAAAAA TGTAATGGAG
ACGTTACTGA CATTGTATAT GGGGACAAAT GCTGTATTTT CAGAACTTCA ATCTGCCTTT GATATAATAT ATAATTTCCC
CTCCTCTGTG TTGCATTTTT CTTGAAATTC AAATGAGTCA T

>Vigan.01G547100.01
ATCGAACCTT TTTACAAATT TTTTAGCTTC ATTTTTTTAC TATTTTTTTT AGCTCATTTT TACTCGACAC TCGACACTCG
ACGTACGGCT TGTAATGTTG CCGTTTTAAC CTTTTTCAAA GCGTTGCGTT TTGATAGTCG TTCAAAAACG GCATGAAATT
TGAAATGCCT CTTCGATTAC TCTTCTCTTC ACTTGCTTCA TCATCGTTTC TGATAAACCC TAGAAAATTT GGATCGGTTC
GCATTTCATC TCCGATGTCT TGGGCCTGCA AAAAATGCAC TTTCGTGAAC CCTCCTTCTC AAAAGCGGGA GTGCGAAATC
TGCTTGTCCC CCGCGTCCCC AAGCGGTCCT TCTTCTTCGT CTTCGTCGCC CCCGAAATGG TCGTGCAAGG CTTGCACTTT
CTTAAACCCT TACAACAACC CCTCTTGCGA AGTCTGCGCT ACTCGATGCC CCGTTCTCTC CCTTTCCCAT CTCGACGACT
TGACTGACGC CACTGACGGC GATTCTTCCG TTGGCTCTGT TTTCTTCCCT CTTCGACCCT GCAACAAAAG AAAGGCCATC
CATGAAGTTC ATGTTGTCGA GGATGATGAT GATACTTCAA AGAAGGTTAA GCTGTTCAAT AAGGCTACAC CTACACGTAC
CACCGGCGAT GATAATGCGG AGTCGGGAAA AGCTTTTAGT ACGTTTAAGA TACTGAGTTA CAATGTCTGG TTCCGGGAAG
ATTTGGAGTT GCAGAAGAGG ATGGAGGCTA TTGGTGATCT TGTTCAGTTG CATTTCCCTG ACTTTATCTG CTTCCAGGAG
GTGACTCCCA ATATATATGA CATATTCAAG CAATCCACGT GGTGGAGTGT GTACCGTTGC TCGGTTTCTT CTGAGATGGC
TTATTCAAGA CCATACTTCT GTATGGTGCT AAGCAAACTG CCTGTTAAGT CTTTCTGCAA CAAGCCCTTC AGCAATTCCG
TTATGGGAAG AGAACTTTGC ATTGCCGAAG TTGAAGCTGA AAGTGGCAAG TCATTGGTTA TTGCCACTAG CCATCTTGAG
AGTCCCTGTC CAGGCCCCCC CAAATGGGAT CAGATGTTCA GCAAGGAAAG AGTAGTTCAG GCCAATGAGG CTTTAAACCT
TCTCGATAAT AAGCCAAATG TTGTTTTTGG AGGTGACATG AACTGGGATG ATAAAGGTGA TGGCCAATAT CCGTTGCAAG
GTGGATGGAT TGATGCCTGG GCTCAACTAA GGCCAAATGA AAGTGGTTGG ACTTATGACA CCAAGACGAA CCAGATGTTG
ACAGGCAACC GTACTCTCCA AAAGCGACTA GATCGCTTCA TTTGTCATTT AACTGATTTT AAGATAATTA GTGTTGACAT
GATTGGGATG GAAGTAATAC CTGGTCTTTC ATACAACAAA GAGAAGAAAG TAAGAAATGA GATCAAACAA CTGGTACTTC
CAGTTTTGCC TAGTGATCAT TATGGTCTGC TTTTGACAAT TTCTAGTGTG TAATTGCCTG TCTGGAGAAT CTGGCTGTCC
GGTGAACCCT TTGTTTTGAT GTTCTCACTC TCTTACCGAT TCTGTATCTT AGGCATGTTT TGCATGCAAT TTTGTACAGA
TTACATGAAA AATGTAATGG AGACGTTACT GACATTGTAT ATGGGGACAA ATGCTGTATT TTCAGAACTT CAATCTGCCT
TTGATATAAT ATATAATTTC CCCTCCTCTG TGTTGCATTT TTCTTGAAAT TCAAATGAGT CAT

>Vigan.01G547100.01
ATGAAATTTG AAATGCCTCT TCGATTACTC TTCTCTTCAC TTGCTTCATC ATCGTTTCTG ATAAACCCTA GAAAATTTGG
ATCGGTTCGC ATTTCATCTC CGATGTCTTG GGCCTGCAAA AAATGCACTT TCGTGAACCC TCCTTCTCAA AAGCGGGAGT
GCGAAATCTG CTTGTCCCCC GCGTCCCCAA GCGGTCCTTC TTCTTCGTCT TCGTCGCCCC CGAAATGGTC GTGCAAGGCT
TGCACTTTCT TAAACCCTTA CAACAACCCC TCTTGCGAAG TCTGCGCTAC TCGATGCCCC GTTCTCTCCC TTTCCCATCT
CGACGACTTG ACTGACGCCA CTGACGGCGA TTCTTCCGTT GGCTCTGTTT TCTTCCCTCT TCGACCCTGC AACAAAAGAA
AGGCCATCCA TGAAGTTCAT GTTGTCGAGG ATGATGATGA TACTTCAAAG AAGGTTAAGC TGTTCAATAA GGCTACACCT
ACACGTACCA CCGGCGATGA TAATGCGGAG TCGGGAAAAG CTTTTAGTAC GTTTAAGATA CTGAGTTACA ATGTCTGGTT
CCGGGAAGAT TTGGAGTTGC AGAAGAGGAT GGAGGCTATT GGTGATCTTG TTCAGTTGCA TTTCCCTGAC TTTATCTGCT
TCCAGGAGGT GACTCCCAAT ATATATGACA TATTCAAGCA ATCCACGTGG TGGAGTGTGT ACCGTTGCTC GGTTTCTTCT
GAGATGGCTT ATTCAAGACC ATACTTCTGT ATGGTGCTAA GCAAACTGCC TGTTAAGTCT TTCTGCAACA AGCCCTTCAG
CAATTCCGTT ATGGGAAGAG AACTTTGCAT TGCCGAAGTT GAAGCTGAAA GTGGCAAGTC ATTGGTTATT GCCACTAGCC
ATCTTGAGAG TCCCTGTCCA GGCCCCCCCA AATGGGATCA GATGTTCAGC AAGGAAAGAG TAGTTCAGGC CAATGAGGCT
TTAAACCTTC TCGATAATAA GCCAAATGTT GTTTTTGGAG GTGACATGAA CTGGGATGAT AAAGGTGATG GCCAATATCC
GTTGCAAGGT GGATGGATTG ATGCCTGGGC TCAACTAAGG CCAAATGAAA GTGGTTGGAC TTATGACACC AAGACGAACC
AGATGTTGAC AGGCAACCGT ACTCTCCAAA AGCGACTAGA TCGCTTCATT TGTCATTTAA CTGATTTTAA GATAATTAGT
GTTGACATGA TTGGGATGGA AGTAATACCT GGTCTTTCAT ACAACAAAGA GAAGAAAGTA AGAAATGAGA TCAAACAACT
GGTACTTCCA GTTTTGCCTA GTGATCATTA TGGTCTGCTT TTGACAATTT CTAGTGTGTA A

>Vigan.01G547100.01
MKFEMPLRLL FSSLASSSFL INPRKFGSVR ISSPMSWACK KCTFVNPPSQ KRECEICLSP ASPSGPSSSS SSPPKWSCKA
CTFLNPYNNP SCEVCATRCP VLSLSHLDDL TDATDGDSSV GSVFFPLRPC NKRKAIHEVH VVEDDDDTSK KVKLFNKATP
TRTTGDDNAE SGKAFSTFKI LSYNVWFRED LELQKRMEAI GDLVQLHFPD FICFQEVTPN IYDIFKQSTW WSVYRCSVSS
EMAYSRPYFC MVLSKLPVKS FCNKPFSNSV MGRELCIAEV EAESGKSLVI ATSHLESPCP GPPKWDQMFS KERVVQANEA
LNLLDNKPNV VFGGDMNWDD KGDGQYPLQG GWIDAWAQLR PNESGWTYDT KTNQMLTGNR TLQKRLDRFI CHLTDFKIIS
VDMIGMEVIP GLSYNKEKKV RNEIKQLVLP VLPSDHYGLL LTISSV*