GBrowse Details

Vigan.01G532500.01

Basic Information:
Name: Vigan.01G532500.01
Multiple alignment
Variant Information
Position: Chr01:65490520..65494501 (- strand)
Length: 3982
Functional Information:
Description: Similar to Uncharacterized protein. [G7KQU7, Medicago truncatula]
GO: Biological Process: iron-sulfur cluster assembly (GO:0016226)
Molecular Function: structural molecule activity (GO:0005198)
Molecular Function: iron-sulfur cluster binding (GO:0051536)
InterPro: FeS cluster biogenesis (IPR000361)
FeS cluster insertion protein (IPR016092)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:23.56,13.74,13.76,22.77,16.38,6.63,14.61,12.21
Arabidopsis thaliana homolog: AT5G03905.1
Automatic updates:
Name: NM_001250427 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527785 (LOC100527785), mRNA; nuclear gene for mitochondrial product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:65490520..65490786 (- strand)
Length: 267
Type: three_prime_UTR
Position: Chr01:65490787..65490855 (- strand)
Length: 69
Type: CDS
Position: Chr01:65492387..65492495 (- strand)
Length: 109
Type: CDS
Position: Chr01:65492574..65492704 (- strand)
Length: 131
Type: CDS
Position: Chr01:65494240..65494398 (- strand)
Length: 159
Type: CDS
Position: Chr01:65494399..65494501 (- strand)
Length: 103
Type: five_prime_UTR

>Vigan.01G532500.01 class=Sequence position=Chr01:65490520..65494501 (- strand)
GTTATTGAGG AGTTCACGTT ACATAATACT GTGTGTGAAG CTTTATATTT GAGCATATGA TTTTGAACCC TTACATTTGG
GAGAAAACAC AAGCGACGGA CCAATGATTC GAAGTCTTGC TCTACACTGG GCAGCACGAT TCCGACACAA CCAAAACCTC
CTGCGTCTTT CTTCTTCTTA TGCTTCTCCC GCTACTCTTC ATCATGCCAC TCCCTCTTCT TCTTCCGCTG AGCCCGTTCA
CATCACCCCA AACTGTGTTC GAGTATGTCC CCTTTTCATT TTTTCATTAT TTTATCATTT TCTCATCGAT CTATGTTTCT
TTCTATGCCC GCCGAAACCC AGCAAGGATT TCTGTAAATT GATGGTCACT GCTTAATACA ATCAAAATAT GTTTTTATTT
TTCGTTTGAT ATAGCTATTG GTTTGCATAC GTGATTTGTA CCTCGATTTC TATTTGGCAA ACGGAAAATT GGGGGTTCAA
CAACCATTGC TGGTTTTTTA TGTGTCCCGT TATAGTATAG GGAAAAACAC AAATATGCTT TGTTCAGTGA TTCTTCGATG
ATTGGCGCAC GTCGTTGGAA TACATAATTT ATGTGATGTG ACTATTGTTT AGAAGATGCA GTTATGCTGC TTATAGCATC
GTTGGGTCAT CCTTGCTAAA TTCGATTATA CTAACTTCAT TATTATAAAC TACTGGGAAA AGTGAGAATA TGATGTTTGA
GTTGGAATTT GTTCATAATT AGTGGCAAAA ACAACAGTGA CTATAACTAT AAGTAAGCAG GTACCCAACA AAGGATTGTC
CGTAAGATTC ATTCCTCACA AGAATGTGGG TTTGAGTCCT ACTGCCACTA TAAGTACTTT GTGAGTAGAT GATCTGTGAG
TGCCTCAGTA GGTATTTTTT AGCCGTGGGG TATATCCTGG TTCCAGTTAG CTCTTAACCC AATACACCTA ATTTTTTATC
CATACAGACA AAGTGTAAGT AAGAAGGATT GAATCAAGTT TTGCTAGTTA TTGTTTGTTC CTAGAAAGAC GTGTTGTGAA
CCACTCACCT TTTATTCATG AAGAGTCCAA AGATTGAGAG GCATGCAAAT GGAAAACCTC GTTATCAGGA AAGAGATATA
CTTGTAATTC TTGAGAGAGT TGCCTAAGAT GATATGTATA GTTCAAAAGG AGAGAGAACG AGTGATATAT CTGGTGATAG
GTATTGTAAC AAAGAAGAAA CATAGTACTG TATCCGTCCT TATCTGGGTG AGATGATTGG GAGAGTCTCT TGTATTAAAA
GAGAGAAAGT CTGTGATCCT ACTTCTGATT GTAGACATAT TTTTCCAAGG CTAGATCCCT GGTTCTTCCT TTCAGTAGGA
AAGGATTTTC ACGCTAAAAT CCTTGATGCC ATTCTTCTAG CTTCGCATTC AGTGCCAATA TTGTCTCATT AATTCCAACA
GTCTGTGTGC ATATAGAGAA AGGCGTTAGT GTTCTCAGTA TGGCCGTCTC ACATAGAAAA ATTCTGTTTT CATTGAAATG
AAATAAACTA AGGCATTCCT GTCTCTCCAA CTAGAGGGAT GGCTGCATGG TTTTGTCTCT GTGAATTAAC AAATAAATGC
AATCCAAAAT CTATTATCTT GCTTCGGTGG TCGATTATGA TGACCCTATG TTTTTGTTTA AATTTTTGTT TGATTCATGG
ACCCTCATCA CCCACTCCTG TGATTTCATT ATGTTTATAA GTCACTGAAG CTATATATAT TACAACGTGC GATCAATACT
TATTATGGAC TCATTTCTAC AACGTGTGAC GTAACAGAAA ATAAAGGAAC TGGAAGCAAG TGAATCATCG ACTAGTGGAA
AAATGCTTCG ATTGAGTGTG GAAACTGGTG GATGTTCTGG ATTCCAATAT GTTTTTAATC TTGATGACAG AATCAACTCA
GATGATAGGT ATTACCTTTT CCCATGGAAA TTTCAATAAT GATACGCTAA GCCCTTGTTC TGACAACTTT TATCGCTACA
TTGTAGAGTT TTTGAGAAAG AAGGAACTAA ATTGATCGTT GACAACATAT CATACGAATT TGTAAAAGGG GCAACTGTTG
ATTATGTTGA GGAGCTGATC CGTTCAGCTT TCGTGGTAAG AGAATTGCAC TTGTGAGTGA GCATAAACTG CTGTCTTCAT
ATTAGCACTG TACCATTATT GTGAGACAGA ACTGTACTTT TATGGTTACA ACTAGGGAAG AATCTTTTAT GTGCACGTTT
ATAAATTGAT TGCTTTTAAG AAATACATGT TTCCTTTTTC TTTTCAAGAA GCTCTCATAA AAAGGTTTTA AAAAGAAAAA
AGATGAAAAC TTTCACCAAA AATAGGCTAA GCCAAGCACG CCATATACTG TATTCTTGGA AAGTTGAGAA AAAATATTGA
TGCACACCTA TTTAGCTCCT TTAGTATAAC GCATGCATAT AATTGTTGTC GTCTAGCTGA TTTGCATGTG TTAATAGTGA
GTTTAGGATT TTTCGTGTTG CTGATTTCAC TACTATGTTA TAGTTCTGAT TTCTGAGGAC ACTGCTAATC CATCCACGAA
TTCTTGGGAT TTTTGAAATC CAAAAAAAGA AAATTGGAAT TTATCTGAAA TTATCCAGAA AATTTTCCCA GGTGAACCTG
TTGCAATCTA AATCTAAACA GATTTGAATT GATTTGTAAT CAACCACGTA ATACCTTTAA TTTTTCTTGT TCTGTCTTTT
GATACTAAAA GCATGACTCC ATACTCTGAT ATTACTTATC CTATGTAAGC AGAATCAGCA ATAATTACCA GCTTTGATAA
CACTGTTTAG GTTCACTGTT AAATGATTTC ACAACCTTAT TTTCTCTTGT TCGTTTCGTG ATTTCATGTA TATTAAAGAG
AAAGTTTTGC AGCGGCACTT CAATAGCATG TTTGGTTTAA CTTATTTTTC TTCAATTTCA GCTGTTTCCA TGAGAAAAAC
AATCTGTTTA TAAAATAAGT TGAATGTTTA GAACATCAAC TGGAATTTAT TCAAGTGTTT CTTTAAAAAA TTAAGTGTTT
TTCATGAATC TAAAAATTTA TAACTTATTA TTTTCCAACA ACGTATTTCC CTTTCAGCTT CATACATACT ATTTTTTTCC
TCATTTAGTT GACTTTTTGT TATATCCAAA CAAAATTAAT TGTGTTCAAT CCACTTTTCA GTAAACTTAT TGTTAGGAAT
AAAGCACAAA GGAAAGTTAA ACTCAAAAAA CTAGTCTGTT AGGTGGGAGA GTCTCTCAAG GCTTAAGTAA CATATGATAT
GATGATAGTC TTTTTTTGCT TCATGAGAAC AGTCTTAAGT AACTTTTTCT ACTTAATGTG GAACTTCTAA CAGTTATCGG
AAAAAACCTT ATTTTAATTG TAACTAACAA TAATCAGTTA TGCGTATAAA TACCTAATTG TATGATTTGT ACCAAGAGCT
ATACTATAGA GTTGTATGTC TGTAAAAAAG TATTGATATG AAAACTTACA TAACTGAGTG CTGTAATATG TATATGAGGA
GTGCTACGGA GAAAAGGGAC GTGTGATAAT CATTTATCAT TACTTTGTTC TTTGTTTAAG GTTGCATATT AAAACCATTA
AGGCATATAA CCGATGACAA TTTACTGATT CTGGTTTCAT GTGCAGGTGA CTGAAAACCC CAGTGCAGTT GGTGGTTGCA
GTTGTAAAAG TTCCTTCATG GTGAAACAGC TGTGATTTTG TTTCTCCTTT CTGACTCTTC ATACACTGCT CAGATATTTC
TTATAACCAA TTTTCGGTTC TTTGTACCAC TAAAAGACGA TTCATTGAAC TCAAGGTAAA GTTTATTTTG TACAATGCTC
AAAGATGCAG CTGTTCTAGT AATAGGTTTA TCCATATCCA TAAAAGCAAG TATTTATAGA TTCTGCGTCC TTTGGTTTGT
TATGCCATGA TTTTTTCTCT CTCTAAACGC TCATTCAATA CGTGTATATG CTGATACTGA TA

>Vigan.01G532500.01
GTTATTGAGG AGTTCACGTT ACATAATACT GTGTGTGAAG CTTTATATTT GAGCATATGA TTTTGAACCC TTACATTTGG
GAGAAAACAC AAGCGACGGA CCAATGATTC GAAGTCTTGC TCTACACTGG GCAGCACGAT TCCGACACAA CCAAAACCTC
CTGCGTCTTT CTTCTTCTTA TGCTTCTCCC GCTACTCTTC ATCATGCCAC TCCCTCTTCT TCTTCCGCTG AGCCCGTTCA
CATCACCCCA AACTGTGTTC GAAAAATAAA GGAACTGGAA GCAAGTGAAT CATCGACTAG TGGAAAAATG CTTCGATTGA
GTGTGGAAAC TGGTGGATGT TCTGGATTCC AATATGTTTT TAATCTTGAT GACAGAATCA ACTCAGATGA TAGAGTTTTT
GAGAAAGAAG GAACTAAATT GATCGTTGAC AACATATCAT ACGAATTTGT AAAAGGGGCA ACTGTTGATT ATGTTGAGGA
GCTGATCCGT TCAGCTTTCG TGGTGACTGA AAACCCCAGT GCAGTTGGTG GTTGCAGTTG TAAAAGTTCC TTCATGGTGA
AACAGCTGTG ATTTTGTTTC TCCTTTCTGA CTCTTCATAC ACTGCTCAGA TATTTCTTAT AACCAATTTT CGGTTCTTTG
TACCACTAAA AGACGATTCA TTGAACTCAA GGTAAAGTTT ATTTTGTACA ATGCTCAAAG ATGCAGCTGT TCTAGTAATA
GGTTTATCCA TATCCATAAA AGCAAGTATT TATAGATTCT GCGTCCTTTG GTTTGTTATG CCATGATTTT TTCTCTCTCT
AAACGCTCAT TCAATACGTG TATATGCTGA TACTGATA

>Vigan.01G532500.01
ATGATTCGAA GTCTTGCTCT ACACTGGGCA GCACGATTCC GACACAACCA AAACCTCCTG CGTCTTTCTT CTTCTTATGC
TTCTCCCGCT ACTCTTCATC ATGCCACTCC CTCTTCTTCT TCCGCTGAGC CCGTTCACAT CACCCCAAAC TGTGTTCGAA
AAATAAAGGA ACTGGAAGCA AGTGAATCAT CGACTAGTGG AAAAATGCTT CGATTGAGTG TGGAAACTGG TGGATGTTCT
GGATTCCAAT ATGTTTTTAA TCTTGATGAC AGAATCAACT CAGATGATAG AGTTTTTGAG AAAGAAGGAA CTAAATTGAT
CGTTGACAAC ATATCATACG AATTTGTAAA AGGGGCAACT GTTGATTATG TTGAGGAGCT GATCCGTTCA GCTTTCGTGG
TGACTGAAAA CCCCAGTGCA GTTGGTGGTT GCAGTTGTAA AAGTTCCTTC ATGGTGAAAC AGCTGTGA

>Vigan.01G532500.01
MIRSLALHWA ARFRHNQNLL RLSSSYASPA TLHHATPSSS SAEPVHITPN CVRKIKELEA SESSTSGKML RLSVETGGCS
GFQYVFNLDD RINSDDRVFE KEGTKLIVDN ISYEFVKGAT VDYVEELIRS AFVVTENPSA VGGCSCKSSF MVKQL*