GBrowse Details

Vigan.01G526900.01

Basic Information:
Name: Vigan.01G526900.01
Multiple alignment
Variant Information
Position: Chr01:65086295..65090885 (- strand)
Length: 4591
Functional Information:
Description: Similar to uncharacterized LOC101218430. [XP_004159825.1, Cucumis sativus]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: F-box domain (IPR001810)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:71.47,27.29,12.19,9.01,12.49,10.34,14.27,6.95
Arabidopsis thaliana homolog: AT4G15563.1
Automatic updates:
Name: NM_001252818 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100793622 (LOC100793622), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:65086295..65086550 (- strand)
Length: 256
Type: three_prime_UTR
Position: Chr01:65086551..65086817 (- strand)
Length: 267
Type: CDS
Position: Chr01:65088053..65088301 (- strand)
Length: 249
Type: CDS
Position: Chr01:65088746..65088904 (- strand)
Length: 159
Type: CDS
Position: Chr01:65089026..65089109 (- strand)
Length: 84
Type: CDS
Position: Chr01:65089110..65090885 (- strand)
Length: 1776
Type: five_prime_UTR

>Vigan.01G526900.01 class=Sequence position=Chr01:65086295..65090885 (- strand)
CACCAGATAA TGAATTTTGA ACTGTAATTA TCCTACATAT GTAAGTAAAA CGAGTACAAA AAAATATTAA AGTTTAGAAG
ACACTCAAAT TGTATTAAAA AACCAATTTT AACGAGGATG CATGAAGATT CCTTGAAGGA AAGAAACTTG AACACGTATA
TTTATTTTCA ACTGTCCAAG TAAACATAAA AAAAATAGGT TTAATGTCTC GGTAGGTCCC TATTTTCGGC GTGAATCTCA
AATAGGTCCC TTTTCTTTTC GGCGTCTCAA TTGGCTCCCC ATTTTTGTAA AATTGTAACA ATTAAAGGCC TACCGTCAAA
TTGGACAAAC GGCCGTTTAA TTGTTTATTA CGTGGCATGG TAAGTGTTTT CAGTAATCAT AGGTGGAATT AAAAAAGAGT
TTTGTATTAA AAACTACGAG GTTAAATCAG CTTTAGAGAA AGGGCACAGT GGGAATTCCC ACTTCATCTT CCCCTCTCCT
TCTCATACAC TACCCGAGTT CTAAAGCAGA GAGGATGAAC CCGAACATGT TCCGCTTGAG GAAGCCATGG GTCCTGCGCC
TAACAGTGCG CGATTTGTGA TTGTTGGGTT CTTCTTTGCA GGTCTGGTTT TTATGCAGGC TCGATTGTAG AGCGGGAAGG
TGCGGTGGCG TGTGATGGCT GCCATGGAGG TTGGGCAACG GCGAGGAAGC TCGCGAGGTG AGGGAGGTTA GTGGTGGTCG
CGGCATGGTT GGTGAAGATC GCGAGGTGAT GATCCGAGAT GAAGGTGCGA TTGGGTTCCG AGAATGGAGA AGATGAAGAT
GGTTGTGCCA AGCTTTCGTC AATGGAGGAG AGGCGCGATG AAGGTTGCGG TGGCTGGTGC GTGTTCGATG ATTTGCGTGT
GAGAAGAGTG GTGTCGCGGC GGCTGGCGTG GTTGATGGTG GTGGAGAAGA GGACGGTGAC TTTGTGCGAC GGCGGCGAGA
TGTTGGTGAT GCGAAGACGA ACTCGCAGAT GGCGGTCGTG GTGGCTTCGA ACCCTTGCGC GAAGGAGAAG GAAGGTAGCG
GCGGTCTTGG TTGAGGCACC GTGGTGGTCC GTTGATGCGC CGGCGAGAAA GGAAGGAGAT GATGTTCTGG CCGTGGTGAC
GACTTGCGGC ATTGGCGGGA GCGGCGGAAG CGCAACGGGC GGCTAGGGTT AGGTTTTCTG TGGGTGGAAG ATGATAGGGC
TGACGTGGCG AGGTTGAAGA GAAGGTGTTT GATAGAAAGT CAGTGCGAGA TGGGAATCAT AATCAGTTTT CCCACTATGC
CCTCTCACTA AAGCTGATTT AACCTCATAC TTTTTAATTG AAACTCTTTT TTAATTCCAC CTGTAATTAC TGAAAACACT
GTTCATGCCA CGTAACAAAC AATTAAACGG CCGTTTGTTC AATTTAACGG CAGACCCCTA ATTGTTACAA TTTTACAGAA
ATGGGGACCC AATTGAGACG CCAAAAAGAA AATTGACCTA TTTGAGATTC ACGCCCGAAA ATAGGGACCT ACCGAGACAT
TAAACAAAAA AATATTAATA CCACTTTTGC TGTTACACGC CATTTTCAAC TGTGGCAAAG GACATTAATT AAAAAACAGA
GAAAAAAAAA CTCAAATAGA TCAGAGAAGC GGTGGATTCC TTCTCGCCAG TGATAGGTGT TGGTTGAAAT TGGACAAAGG
ATGTCATTCC CCTTTTTGTC CTTTTCATTG TACCATTAAA TCAACACTGC AATCGTCGAA TGAACATAAC ACTGTTCATT
CTATTTGCTG TTTCAAATGA ACAAAGGAAA ATCAGATTCT GTCTCCATCT TCAGTTCCCT TCCTGAAGAT GTTGTCCTCA
AAATTGCTTC GCTGCTTCAG GTTCCCTTTT ACATTTTTTT ATTCTGATCA CGAATTCCGA TTCTCCTTAG ATAGGAAAGC
TTCGATTCTA CTTGACCCTT TTGTTTCGTT TTCAATTTGG TGCAAAAAAA CCCAAAAAAA GGTGCGGGAT TTGTGTGCCT
TAGGTTGTTG TTCGAGGTTC TGGAGGGAAC TCTGCTTCTC GGATTGCATT TGGGAGTCTC TTGTCAGAAA CAGATGGCCC
TTACTCTCTT CCTTCCATTT CCCTTCCTCT TCTACTCTCA CTCATTCTCC CAATTTCAAG GTATTCACTG ATTCTCCCCT
TTTTGGAGGA ACACCCTATT TGTTTTTCAA CCTTAATTTA TCAAAGTTTG ATACTTCTCT TTATTGGTTT CTGAATTGGG
ACCTCTGGGT ATCGAAGCCT TAAATTTGTT ATTTATTTTG TGTTAAACTT TTTTGTTAAC TTCGTTGGAA AGAACTTTGT
CCCCTGCGAT TGAATTGAGT AAATAGAACA TGCATCAGTA ATGTAAAAGG AAAAAAAAAA TACACCATCA ACGAAATACA
AATTGTCAGG AACTGTACTT CTATTAATAT TTGCTAGTTA CCTCAGAAGG TATCATAACA TGGTGTAAAA ACCTTTTACA
TTGTCACTCT ATAGAGATTA AACTCCACCG AATTATTGTT ACATGGTGCT GATGATTTGA TTCTTGGATG TGTGGTAATT
TTTTGTTTGG AAATTGGGTT GCAGAAGTGG AGGAAATTGT ACTTGGATAG GCACGTGGAA TTGGGAGTGA GAGCAAGGTC
TGTTGTGAAG TTTGTGGAAG CTTGCTCACC TTCTGAATCA GTTGAGGTTG GGGACCATCT GAAAGCTGTT GACACCCTGA
TTGGTACGAG CTTTGGGTTT GAAGACGTGC AAAGGTTCTT GTTCGACCCT CAAATGAATG TGCTGATTAA CTTGGTTGGG
GTACACTATT GCCTCACAAC CCTTGGGATT CGGGTATTCC CATTCTTTGA CACCCTATTT TGGTTTGCTT TGTGGGTCAT
GCTGACTAGT ATCCAAGTTA AGGAATAAAA AATGAGGGTT TTGTTTGAAC AACCTTCCCC ATAAAGGTTT CTATGAGAGA
AAAATAAGAA GAAAAATTGA AATAAATTTC TCCATAAATT AAATCAGTTT ACATGTTAGC TAATTTGCAC AAACTCTCAT
ATAGTTCTCT AACTTTTTAA TTTTTGCATA AGTTAATTTT AATTTATAGA AAGACTTGTT TCATTTTCGC TTTCTATTTT
TTTCTTCTAA AAGCATTTAT GAAGATGTTT GTCCAAATAG ATACTAGAAA GCTTTGATTG CAAGCTACAT TGGAACTCAT
AGGGTAATGC ACCTTAATTT TCTTTGTTTT TTATGGAGTT TAACTACATA CACTCCTGTT TGTGATCCAA CACATTTTAG
GTTAACTTAA TGTCACTTGG TAAAAATTTG GATGAGTACT TTTACTATGC ACGGGTTTAT CAAACTGCAC CTTTGGCATA
TTGGCAATGG TATATATGGT ACTTTTATTC GAAGCAAGGG TGCAACTGGA AAACAAGAGT AAATATGGTT TGACATTTGC
CAAATGTGAA TCTGAACAAC TGTTTGATTG CATTAGTGGA GTTTATTCAA GTTTATCTAA TGTAAACATC GTTGCAAAAT
TTATTGTGCT TGTTTAATTC ATCACATTTA ATTAAGACCG TTAGTTATTG TTTCTTTAAA GCTTCAATTT TTTCGTGCCT
ATTCATAATC TTTGGTCAAT CAAATAAAAT ATCTTTTTAT CAGTTTAATG CAGGGACGTA ATATGAAACA CTGATTAGGA
AAAAAATCCG TGACACATGC TCAAAATTAC CTGTGTGTGC ATTTGTTGCA TTGTTCCTAA GTTTGCATCT TTAAAACCTT
TAGAAATAAG TGATGTCTTT TCATATCTTA CCTGTTTCTT TTTCCTTTAA ATTCCATTCC TATTCTTATC CTTCCTTAGA
GAAATAAACA GGATAAAAGT GAACCATGAT CTGTAATATG TATTTTCCCA CTTCTCCCAA GAAGGCTTTT ACCTGGAAGT
TGTTATATAT AAGATAGTGC ATTGCATAGA ACATATAATC GAATAGATGT CTGCGTCATA GTTATATGAA CTTCGTTCAT
GTGAACCCTT TTGGAGGAAC TGACCAGAGT GGTATGTATT TAATATATGT AAGTGTCTTC AATGGCAGGG TGATAATCTT
GTAGAAACTC TTCGGACTCA TGAGATCTCA GATCGGCGTG TCTGTGTCAA GTGGTGGAAA GTTGGTAGAT GGTTCTATGG
CTTCCGTATG AGGGATGAAA CACATTCTCG GTGGGTTTCT TTGGCAGATT TGGCAGCAGA AGATGATGAA CATGTTTTGG
GAGTGCTTCG CCGAGGTACT ATTCATGAGG TTTTACGTGT TCAAATCTCT GTGATTGGTC GTAAATCAGC ACATTGGTCC
CACAGATTGG AATAGAAAGT TATAGGGAGA TCACATAAGG CAGTGATAGC TATCAGTAAT TCAGTTTCAT TGTGTATAGT
TTGTTTTCAA ACTCTGTTGT CGTAATACAT ACAAAGAATG TCATCAAAGA TAATACAATA ACAAGTTCAT AATGCTTATT
GGCATATTTG AACTTCCAAT CTTGTTGTAT ATAACTATGA ATTCACAAAC TTGATTTATG GCAGCACCTT ATAAAATAAA
TAAATAAAAA AGGCTTGAAG GTTTGTTTAC G

>Vigan.01G526900.01
CACCAGATAA TGAATTTTGA ACTGTAATTA TCCTACATAT GTAAGTAAAA CGAGTACAAA AAAATATTAA AGTTTAGAAG
ACACTCAAAT TGTATTAAAA AACCAATTTT AACGAGGATG CATGAAGATT CCTTGAAGGA AAGAAACTTG AACACGTATA
TTTATTTTCA ACTGTCCAAG TAAACATAAA AAAAATAGGT TTAATGTCTC GGTAGGTCCC TATTTTCGGC GTGAATCTCA
AATAGGTCCC TTTTCTTTTC GGCGTCTCAA TTGGCTCCCC ATTTTTGTAA AATTGTAACA ATTAAAGGCC TACCGTCAAA
TTGGACAAAC GGCCGTTTAA TTGTTTATTA CGTGGCATGG TAAGTGTTTT CAGTAATCAT AGGTGGAATT AAAAAAGAGT
TTTGTATTAA AAACTACGAG GTTAAATCAG CTTTAGAGAA AGGGCACAGT GGGAATTCCC ACTTCATCTT CCCCTCTCCT
TCTCATACAC TACCCGAGTT CTAAAGCAGA GAGGATGAAC CCGAACATGT TCCGCTTGAG GAAGCCATGG GTCCTGCGCC
TAACAGTGCG CGATTTGTGA TTGTTGGGTT CTTCTTTGCA GGTCTGGTTT TTATGCAGGC TCGATTGTAG AGCGGGAAGG
TGCGGTGGCG TGTGATGGCT GCCATGGAGG TTGGGCAACG GCGAGGAAGC TCGCGAGGTG AGGGAGGTTA GTGGTGGTCG
CGGCATGGTT GGTGAAGATC GCGAGGTGAT GATCCGAGAT GAAGGTGCGA TTGGGTTCCG AGAATGGAGA AGATGAAGAT
GGTTGTGCCA AGCTTTCGTC AATGGAGGAG AGGCGCGATG AAGGTTGCGG TGGCTGGTGC GTGTTCGATG ATTTGCGTGT
GAGAAGAGTG GTGTCGCGGC GGCTGGCGTG GTTGATGGTG GTGGAGAAGA GGACGGTGAC TTTGTGCGAC GGCGGCGAGA
TGTTGGTGAT GCGAAGACGA ACTCGCAGAT GGCGGTCGTG GTGGCTTCGA ACCCTTGCGC GAAGGAGAAG GAAGGTAGCG
GCGGTCTTGG TTGAGGCACC GTGGTGGTCC GTTGATGCGC CGGCGAGAAA GGAAGGAGAT GATGTTCTGG CCGTGGTGAC
GACTTGCGGC ATTGGCGGGA GCGGCGGAAG CGCAACGGGC GGCTAGGGTT AGGTTTTCTG TGGGTGGAAG ATGATAGGGC
TGACGTGGCG AGGTTGAAGA GAAGGTGTTT GATAGAAAGT CAGTGCGAGA TGGGAATCAT AATCAGTTTT CCCACTATGC
CCTCTCACTA AAGCTGATTT AACCTCATAC TTTTTAATTG AAACTCTTTT TTAATTCCAC CTGTAATTAC TGAAAACACT
GTTCATGCCA CGTAACAAAC AATTAAACGG CCGTTTGTTC AATTTAACGG CAGACCCCTA ATTGTTACAA TTTTACAGAA
ATGGGGACCC AATTGAGACG CCAAAAAGAA AATTGACCTA TTTGAGATTC ACGCCCGAAA ATAGGGACCT ACCGAGACAT
TAAACAAAAA AATATTAATA CCACTTTTGC TGTTACACGC CATTTTCAAC TGTGGCAAAG GACATTAATT AAAAAACAGA
GAAAAAAAAA CTCAAATAGA TCAGAGAAGC GGTGGATTCC TTCTCGCCAG TGATAGGTGT TGGTTGAAAT TGGACAAAGG
ATGTCATTCC CCTTTTTGTC CTTTTCATTG TACCATTAAA TCAACACTGC AATCGTCGAA TGAACATAAC ACTGTTCATT
CTATTTGCTG TTTCAAATGA ACAAAGGAAA ATCAGATTCT GTCTCCATCT TCAGTTCCCT TCCTGAAGAT GTTGTCCTCA
AAATTGCTTC GCTGCTTCAG GTGCGGGATT TGTGTGCCTT AGGTTGTTGT TCGAGGTTCT GGAGGGAACT CTGCTTCTCG
GATTGCATTT GGGAGTCTCT TGTCAGAAAC AGATGGCCCT TACTCTCTTC CTTCCATTTC CCTTCCTCTT CTACTCTCAC
TCATTCTCCC AATTTCAAGA AGTGGAGGAA ATTGTACTTG GATAGGCACG TGGAATTGGG AGTGAGAGCA AGGTCTGTTG
TGAAGTTTGT GGAAGCTTGC TCACCTTCTG AATCAGTTGA GGTTGGGGAC CATCTGAAAG CTGTTGACAC CCTGATTGGT
ACGAGCTTTG GGTTTGAAGA CGTGCAAAGG TTCTTGTTCG ACCCTCAAAT GAATGTGCTG ATTAACTTGG TTGGGGTACA
CTATTGCCTC ACAACCCTTG GGATTCGGGG TGATAATCTT GTAGAAACTC TTCGGACTCA TGAGATCTCA GATCGGCGTG
TCTGTGTCAA GTGGTGGAAA GTTGGTAGAT GGTTCTATGG CTTCCGTATG AGGGATGAAA CACATTCTCG GTGGGTTTCT
TTGGCAGATT TGGCAGCAGA AGATGATGAA CATGTTTTGG GAGTGCTTCG CCGAGGTACT ATTCATGAGG TTTTACGTGT
TCAAATCTCT GTGATTGGTC GTAAATCAGC ACATTGGTCC CACAGATTGG AATAGAAAGT TATAGGGAGA TCACATAAGG
CAGTGATAGC TATCAGTAAT TCAGTTTCAT TGTGTATAGT TTGTTTTCAA ACTCTGTTGT CGTAATACAT ACAAAGAATG
TCATCAAAGA TAATACAATA ACAAGTTCAT AATGCTTATT GGCATATTTG AACTTCCAAT CTTGTTGTAT ATAACTATGA
ATTCACAAAC TTGATTTATG GCAGCACCTT ATAAAATAAA TAAATAAAAA AGGCTTGAAG GTTTGTTTAC G

>Vigan.01G526900.01
ATGAACAAAG GAAAATCAGA TTCTGTCTCC ATCTTCAGTT CCCTTCCTGA AGATGTTGTC CTCAAAATTG CTTCGCTGCT
TCAGGTGCGG GATTTGTGTG CCTTAGGTTG TTGTTCGAGG TTCTGGAGGG AACTCTGCTT CTCGGATTGC ATTTGGGAGT
CTCTTGTCAG AAACAGATGG CCCTTACTCT CTTCCTTCCA TTTCCCTTCC TCTTCTACTC TCACTCATTC TCCCAATTTC
AAGAAGTGGA GGAAATTGTA CTTGGATAGG CACGTGGAAT TGGGAGTGAG AGCAAGGTCT GTTGTGAAGT TTGTGGAAGC
TTGCTCACCT TCTGAATCAG TTGAGGTTGG GGACCATCTG AAAGCTGTTG ACACCCTGAT TGGTACGAGC TTTGGGTTTG
AAGACGTGCA AAGGTTCTTG TTCGACCCTC AAATGAATGT GCTGATTAAC TTGGTTGGGG TACACTATTG CCTCACAACC
CTTGGGATTC GGGGTGATAA TCTTGTAGAA ACTCTTCGGA CTCATGAGAT CTCAGATCGG CGTGTCTGTG TCAAGTGGTG
GAAAGTTGGT AGATGGTTCT ATGGCTTCCG TATGAGGGAT GAAACACATT CTCGGTGGGT TTCTTTGGCA GATTTGGCAG
CAGAAGATGA TGAACATGTT TTGGGAGTGC TTCGCCGAGG TACTATTCAT GAGGTTTTAC GTGTTCAAAT CTCTGTGATT
GGTCGTAAAT CAGCACATTG GTCCCACAGA TTGGAATAG

>Vigan.01G526900.01
MNKGKSDSVS IFSSLPEDVV LKIASLLQVR DLCALGCCSR FWRELCFSDC IWESLVRNRW PLLSSFHFPS SSTLTHSPNF
KKWRKLYLDR HVELGVRARS VVKFVEACSP SESVEVGDHL KAVDTLIGTS FGFEDVQRFL FDPQMNVLIN LVGVHYCLTT
LGIRGDNLVE TLRTHEISDR RVCVKWWKVG RWFYGFRMRD ETHSRWVSLA DLAAEDDEHV LGVLRRGTIH EVLRVQISVI
GRKSAHWSHR LE*