GBrowse Details

Vigan.01G523200.01

Basic Information:
Name: Vigan.01G523200.01
Multiple alignment
Variant Information
Position: Chr01:64768795..64772023 (+ strand)
Length: 3229
Functional Information:
Description: Similar to vesicle-associated membrane protein 724-like. [XP_004487861.1, Cicer arietinum]
GO: Biological Process: transport (GO:0006810)
Biological Process: vesicle-mediated transport (GO:0016192)
Cellular Component: integral to membrane (GO:0016021)
InterPro: Synaptobrevin (IPR001388)
Longin domain (IPR010908)
Longin-like domain (IPR011012)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:99.59,52.31,26.88,32.42,22.40,30.47,57.90,38.05
Automatic updates:
Name: NM_001255448 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max vesicle-associated membrane protein-like protein (LOC100781950), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:64768795..64768952 (+ strand)
Length: 158
Type: five_prime_UTR
Position: Chr01:64768953..64769142 (+ strand)
Length: 190
Type: CDS
Position: Chr01:64770127..64770268 (+ strand)
Length: 142
Type: CDS
Position: Chr01:64770383..64770503 (+ strand)
Length: 121
Type: CDS
Position: Chr01:64771052..64771114 (+ strand)
Length: 63
Type: CDS
Position: Chr01:64771555..64771704 (+ strand)
Length: 150
Type: CDS
Position: Chr01:64771705..64772023 (+ strand)
Length: 319
Type: three_prime_UTR

>Vigan.01G523200.01 class=Sequence position=Chr01:64768795..64772023 (+ strand)
TCTTCCACAA TTTATTTCTT TCTTTCAGAC CAAGAAAAAG TAGAAACCAA ACGCGGCCTT CAAGTTCCAA ATACCAACAA
CTAAGTAAAC AACTTCTCTT TCCTGTCTCT TTCTCTCTTT CTCTCTCTGC TTCTGAGTTC CGAGTTGCAG AGAGAGCAAT
GAGTCAGGAA TCGTTTATAT ACAGCTTCGT GGCTCGGGGG ACGGTGGTGT TAGCTGAGTA CACCGAGTTC ACCGGGAACT
TCCCTGCAAT TGCAGCTCAG TGTCTCCAGA AACTACCCTC TTCCAATAAC AAGTTCACCT ACAATTGTGA CCACCACACC
TTCAATTTTC TCGTCGAAGA TGGTTACGGT ACTGCTTCTC TCCTTCGATC TCTTGCTTTT TCTCTTTGCT GCATCTTCCT
CTCAACGTGG ACCTTCTACC ACTTTAATTC ACACTTTAGC TGCTGGATCT ACTTTGTCGC ATCAAACTGG CACATATATA
TCTCTTTTTT TTGTGGGCTA TCCTTACTTT TTGGGGTTCG TGTGCAAGTT TTGTTATTTT TTCATTTCAA ACAAATGAAT
GGTGAAAAAT GGAATTTGGG TTCTCCTGGT CCATTCATGG TGGTTTTTTT TATGAGAATT AGAATCAAGC TTTATTCTGG
GACAAATAGA AACAAGGCTA TGAGGGATGA AGGAACAGTT GTCACCTCTG AATGTCGGTG TCTTTCTCTC CTGTTAGTTT
AACCAAACAT GCGACCCCTT CATATGTATG TTCCACTTCT CTTGGTTTCT GAACGAAACT GTCTATTTCC AAATCAATGG
TTTATTGAAT TGTGCTGGAC ACGTTGACTA GTGATACGGC CATTATAGTG TACATAATGG AACATGAGAG GCAACTCTCA
CTTCATGAGT TAGCTTCCAA ATTCTAAGTG GTGAGTGAGG ATAAAAGATT AAGATGTTCA CTTTATCACT CATTTTGAGA
CTCTTTATCT GTTCTTTGAA AAAATTAAGT AACTCTCAAT CGACTTTGAG TATAGGCCGA CTTACATAAA TTTGTGCGTT
CTTCTTTTGC GTTGTGCAAT TTTCTGTTTA TTCTCATCTT TGCTGTAACT CAGAGTTACA GAAAGATTGA GTTGCAGTTG
TGTGGATTTT ATCTTCTTAT AGTGTGTTTG GTTCAGTTTG GATGACACCT GAATCAATTA TCTCTGACAT AATCACGGTG
ATACCATGAA AAGTTAGAAG CAACTATTGT TACTTTATCT TCACCATGAA AAATTAGTTG ATTTTTCTCA CCGTGAAGCC
AGTACGAGCA CACTATTAAT GTTTTCCATT TTGGGATCAA TGTGAATTGC AGCTTACTGT GTTGTTGCCA AGGAATCTGT
GAGCAAACAA ATCTCTATTG CTTTCCTAGA ACGTGTCAAA GCGGACTTTA GGAAAAGATA TGGGGGTGGA AAGGCTGACA
CAGCTGTTGC CAAAAGTCTC AACAAGGAGT TTGGGTATGC TTATTTCTTT CCAAGTAATT CATGATGATG TTTACTCATA
ATTCAATGCT TGAATAGAAG AAAAAAAATT GTATAAAAAT GGTAAATAAT ACGTATGTAC ATTTGCAGAC CAGTAATGAA
AGAGCACATG AAGTATATAA TAGACCATGC TGAAGAGATT GAAAAGCTAA TAAAAGTGAA GGCTCAAGTT TCAGAAGTTA
AGAGTATCAT GTTAGAGAAC ATTGATAAGG TATGTTTAAG TTTTAGATTG AGACGTGGGA TTTTTTAGGA TAATTTCAGT
CATTTCCTTG TGTAGTTGTC TTATTCATCC TGCTCTACTA ACCTTCAATC CATTGTTATG TATATTACCG TCATTGAAAT
AGATGATCGA GAGGGGGAAA ATGTAGTTTT GAAGATTGCT ATATTAGTCA TTTGCTTGTT TTATTACAAC TTTTCAGGTC
GTTTGGAAAA AAAAATCACT AGGTTTATGT GTGCCTCCTT ATATTTCTTT GGGAAATTTC AAGAATTGAA ATTTTAGAGC
ACAATAAAAA ACTTTGGAGA AGCAATATGC TTCTATCCCC GGCCTTTTCC TTTCTGTCAC TGTGGTTGGT GACAACTTGC
TCAGTGACTA AATCATAACC TGTTAAATTC TGTATCGTAT AGACCTTTTC CTATATGTTG TCCTGGTTGT ATTAACATCA
GTATATTTTG TTGTCTTTAC TGGATGCATT GATTGCAAAA TGTTAAACAA GAAAGTGACA TACATTGTCA ATTTGTTTTT
GCTATACGTA CTTTCAGGCC ATTGATAGAG GAGAAAATCT AACTATTCTT GCCGACAAGT CTGAGACATT GCACTCACAA
GTAAGTTGAA TGAGGTTTGC ACTTTGGAGG CGTTTGTTTC ACAGAATCTT TTTGCATTCC TGGGAAATGA AAGTGAGAAT
GTATATTCCT GTGCTTGTTG GAAGGTTATA AAATATTTCT GGGCATGTTT TATTCTCAGG AACAGTTTAT ATTCCCCTGC
TAAGGAGTGG GTATATTCTC ATGGAAAAGG GGAAGTTACT TTGTAACCTC TATTATGACT TCCAATTTTT TTTTATTACA
ATTAATTTAC AATTTAAAAA GTAGTTTAGG AATATAAAAA ACTAAACAAA CGTATTTTTA GACATGCCTT GGGATAATTT
TCCAACCGTA ACATTCCCCT GAACTAAATT TCCAGGAACT CAAAACCTTA ACTTGAAACA AACACCTGCT TTGGTTTGTA
ATCTTATGTT GTCTAGGGCT GAAGGGTGTC CGATTTTCAG GCCCAGGAGT TCAGAAAGAA GGGAACTCAA GTCCGTCGGA
AGATGTGGTA TCAGAACATG AAAATTAAAT TGGTTGTTCT TGGAATTTTG TTGCTTTTGG TTCTGGTTAT CTGGCTTTCT
GTCTGCCATG GATTCAACTG TGCAAATTAA CAAGAAATGG AAGTTTACGG ATAGGTATTT AAGTGATGTT TAAAGAGCAA
TTTCTTTGAA GTTTTAGCAA AAATCTACTT AGAAGTGGGA GTTTGGCAAC TGGAGAAAAA AAGTTTCCTA CCTTCTTTGT
TGGTTGATAA TGGTATACGA TATTCTTGGA AATTCTTAGA GAGGAGATTG GGTGTATCTG TAATGTATCA TATGCTGGAC
TGTTTGGTCT TGTCAAACTC TACACTCTTA ATATGTTTCC CTTTTCTTTA CTTTAAATAT AGAAAAATGT TTCTGTCTCT
TTATAGCATG TATGTTTGCA AATTCTGGC

>Vigan.01G523200.01
TCTTCCACAA TTTATTTCTT TCTTTCAGAC CAAGAAAAAG TAGAAACCAA ACGCGGCCTT CAAGTTCCAA ATACCAACAA
CTAAGTAAAC AACTTCTCTT TCCTGTCTCT TTCTCTCTTT CTCTCTCTGC TTCTGAGTTC CGAGTTGCAG AGAGAGCAAT
GAGTCAGGAA TCGTTTATAT ACAGCTTCGT GGCTCGGGGG ACGGTGGTGT TAGCTGAGTA CACCGAGTTC ACCGGGAACT
TCCCTGCAAT TGCAGCTCAG TGTCTCCAGA AACTACCCTC TTCCAATAAC AAGTTCACCT ACAATTGTGA CCACCACACC
TTCAATTTTC TCGTCGAAGA TGGTTACGCT TACTGTGTTG TTGCCAAGGA ATCTGTGAGC AAACAAATCT CTATTGCTTT
CCTAGAACGT GTCAAAGCGG ACTTTAGGAA AAGATATGGG GGTGGAAAGG CTGACACAGC TGTTGCCAAA AGTCTCAACA
AGGAGTTTGG ACCAGTAATG AAAGAGCACA TGAAGTATAT AATAGACCAT GCTGAAGAGA TTGAAAAGCT AATAAAAGTG
AAGGCTCAAG TTTCAGAAGT TAAGAGTATC ATGTTAGAGA ACATTGATAA GGCCATTGAT AGAGGAGAAA ATCTAACTAT
TCTTGCCGAC AAGTCTGAGA CATTGCACTC ACAAGCCCAG GAGTTCAGAA AGAAGGGAAC TCAAGTCCGT CGGAAGATGT
GGTATCAGAA CATGAAAATT AAATTGGTTG TTCTTGGAAT TTTGTTGCTT TTGGTTCTGG TTATCTGGCT TTCTGTCTGC
CATGGATTCA ACTGTGCAAA TTAACAAGAA ATGGAAGTTT ACGGATAGGT ATTTAAGTGA TGTTTAAAGA GCAATTTCTT
TGAAGTTTTA GCAAAAATCT ACTTAGAAGT GGGAGTTTGG CAACTGGAGA AAAAAAGTTT CCTACCTTCT TTGTTGGTTG
ATAATGGTAT ACGATATTCT TGGAAATTCT TAGAGAGGAG ATTGGGTGTA TCTGTAATGT ATCATATGCT GGACTGTTTG
GTCTTGTCAA ACTCTACACT CTTAATATGT TTCCCTTTTC TTTACTTTAA ATATAGAAAA ATGTTTCTGT CTCTTTATAG
CATGTATGTT TGCAAATTCT GGC

>Vigan.01G523200.01
ATGAGTCAGG AATCGTTTAT ATACAGCTTC GTGGCTCGGG GGACGGTGGT GTTAGCTGAG TACACCGAGT TCACCGGGAA
CTTCCCTGCA ATTGCAGCTC AGTGTCTCCA GAAACTACCC TCTTCCAATA ACAAGTTCAC CTACAATTGT GACCACCACA
CCTTCAATTT TCTCGTCGAA GATGGTTACG CTTACTGTGT TGTTGCCAAG GAATCTGTGA GCAAACAAAT CTCTATTGCT
TTCCTAGAAC GTGTCAAAGC GGACTTTAGG AAAAGATATG GGGGTGGAAA GGCTGACACA GCTGTTGCCA AAAGTCTCAA
CAAGGAGTTT GGACCAGTAA TGAAAGAGCA CATGAAGTAT ATAATAGACC ATGCTGAAGA GATTGAAAAG CTAATAAAAG
TGAAGGCTCA AGTTTCAGAA GTTAAGAGTA TCATGTTAGA GAACATTGAT AAGGCCATTG ATAGAGGAGA AAATCTAACT
ATTCTTGCCG ACAAGTCTGA GACATTGCAC TCACAAGCCC AGGAGTTCAG AAAGAAGGGA ACTCAAGTCC GTCGGAAGAT
GTGGTATCAG AACATGAAAA TTAAATTGGT TGTTCTTGGA ATTTTGTTGC TTTTGGTTCT GGTTATCTGG CTTTCTGTCT
GCCATGGATT CAACTGTGCA AATTAA

>Vigan.01G523200.01
MSQESFIYSF VARGTVVLAE YTEFTGNFPA IAAQCLQKLP SSNNKFTYNC DHHTFNFLVE DGYAYCVVAK ESVSKQISIA
FLERVKADFR KRYGGGKADT AVAKSLNKEF GPVMKEHMKY IIDHAEEIEK LIKVKAQVSE VKSIMLENID KAIDRGENLT
ILADKSETLH SQAQEFRKKG TQVRRKMWYQ NMKIKLVVLG ILLLLVLVIW LSVCHGFNCA N*