GBrowse Details

Vigan.01G518100.01

Basic Information:
Name: Vigan.01G518100.01
Multiple alignment
Variant Information
Position: Chr01:64374796..64375640 (+ strand)
Length: 845
Functional Information:
Description: Similar to Pathogenesis-related protein. [C6SZ24, Glycine max]
GO: Biological Process: defense response (GO:0006952)
Biological Process: response to biotic stimulus (GO:0009607)
InterPro: Bet v I domain (IPR000916)
START-like domain (IPR023393)
Major latex protein domain (IPR024948)
Bet v I type allergen (IPR024949)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,0.11,0.15,28.65,0.00,8.47,0.53
Automatic updates:
Name: NM_001250718 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max pathogenesis-related protein (LOC100306363), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:64374796..64374858 (+ strand)
Length: 63
Type: five_prime_UTR
Position: Chr01:64374859..64375042 (+ strand)
Length: 184
Type: CDS
Position: Chr01:64375115..64375404 (+ strand)
Length: 290
Type: CDS
Position: Chr01:64375405..64375640 (+ strand)
Length: 236
Type: three_prime_UTR

>Vigan.01G518100.01 class=Sequence position=Chr01:64374796..64375640 (+ strand)
CACACACACA CACACACTCA GTTGATCTAT CTCATCGTTT CTTTCTACTT TGATCAGAAA ATTATGGGTG TTTTCACTTC
CGAAAGCGAA CTCGTTTCTC CAGTCTCCGC TGCAAAATTG TTCAAAGCCA TTGTCGTAGA TGCCGCCAAC GTCTTCCCAA
AAGCATTACC AAACTTCATT AAGAGCGCAG AAACCATAGA AGGAGATGGA GGACCAGGAA CCATTAAGAA GCTCACTCTT
GCTGAAGGTA AACATCAATT ACTTATATGT AATATAATAT AATTCATTTC ATGTTTATGT ATGTGAAATG TGGAGACAGG
TTTAGGGTTT GTGAAGCACC AGGTAGATGC AATAGACACA GAAAACTATG TGTACAACTA CAGTGTGATC GAAGGAAGTG
CATTGTCAGA TACATTGGAG AAGATATCTT ATGAGTACAA ATTAGTGGGA ACCGATGATG GAGGATCGAT TGTGAAGTGC
ATGAGCAAAT ACTATACGAA AGGTGATGAG AAACTCGCTG AAGAATTTGT CAAGGCTGGT AAGGAGAGAT CTGCGGCATT
CACTAAGGCT ATTCAGGATT TCATTCTGGC TAATCCTCAT TACAATTAAT TAACCCATCT CCATGTTATC GATATGCTAC
AATTCTCTCT CTGTTTCTTC ATCCTGTTGT GTTGCTTTAA GTTTCAATAA TTAACGTTTG ATCTTGCTTT GAGATTGTTC
CCAAAGTGGT CATGATCATT ATATCGGTAC TATTTGTTTT ACCCTTTTGT TAGGAGCGTC TCTGGCTTCA ACTATAATAT
GAATGCATTA TTATTACTTT ATGGCTTACT TGAAATGGAA TCAGA

>Vigan.01G518100.01
CACACACACA CACACACTCA GTTGATCTAT CTCATCGTTT CTTTCTACTT TGATCAGAAA ATTATGGGTG TTTTCACTTC
CGAAAGCGAA CTCGTTTCTC CAGTCTCCGC TGCAAAATTG TTCAAAGCCA TTGTCGTAGA TGCCGCCAAC GTCTTCCCAA
AAGCATTACC AAACTTCATT AAGAGCGCAG AAACCATAGA AGGAGATGGA GGACCAGGAA CCATTAAGAA GCTCACTCTT
GCTGAAGGTT TAGGGTTTGT GAAGCACCAG GTAGATGCAA TAGACACAGA AAACTATGTG TACAACTACA GTGTGATCGA
AGGAAGTGCA TTGTCAGATA CATTGGAGAA GATATCTTAT GAGTACAAAT TAGTGGGAAC CGATGATGGA GGATCGATTG
TGAAGTGCAT GAGCAAATAC TATACGAAAG GTGATGAGAA ACTCGCTGAA GAATTTGTCA AGGCTGGTAA GGAGAGATCT
GCGGCATTCA CTAAGGCTAT TCAGGATTTC ATTCTGGCTA ATCCTCATTA CAATTAATTA ACCCATCTCC ATGTTATCGA
TATGCTACAA TTCTCTCTCT GTTTCTTCAT CCTGTTGTGT TGCTTTAAGT TTCAATAATT AACGTTTGAT CTTGCTTTGA
GATTGTTCCC AAAGTGGTCA TGATCATTAT ATCGGTACTA TTTGTTTTAC CCTTTTGTTA GGAGCGTCTC TGGCTTCAAC
TATAATATGA ATGCATTATT ATTACTTTAT GGCTTACTTG AAATGGAATC AGA

>Vigan.01G518100.01
ATGGGTGTTT TCACTTCCGA AAGCGAACTC GTTTCTCCAG TCTCCGCTGC AAAATTGTTC AAAGCCATTG TCGTAGATGC
CGCCAACGTC TTCCCAAAAG CATTACCAAA CTTCATTAAG AGCGCAGAAA CCATAGAAGG AGATGGAGGA CCAGGAACCA
TTAAGAAGCT CACTCTTGCT GAAGGTTTAG GGTTTGTGAA GCACCAGGTA GATGCAATAG ACACAGAAAA CTATGTGTAC
AACTACAGTG TGATCGAAGG AAGTGCATTG TCAGATACAT TGGAGAAGAT ATCTTATGAG TACAAATTAG TGGGAACCGA
TGATGGAGGA TCGATTGTGA AGTGCATGAG CAAATACTAT ACGAAAGGTG ATGAGAAACT CGCTGAAGAA TTTGTCAAGG
CTGGTAAGGA GAGATCTGCG GCATTCACTA AGGCTATTCA GGATTTCATT CTGGCTAATC CTCATTACAA TTAA

>Vigan.01G518100.01
MGVFTSESEL VSPVSAAKLF KAIVVDAANV FPKALPNFIK SAETIEGDGG PGTIKKLTLA EGLGFVKHQV DAIDTENYVY
NYSVIEGSAL SDTLEKISYE YKLVGTDDGG SIVKCMSKYY TKGDEKLAEE FVKAGKERSA AFTKAIQDFI LANPHYN*