GBrowse Details

Vigan.01G510000.01

Basic Information:
Name: Vigan.01G510000.01
Multiple alignment
Variant Information
Position: Chr01:63778844..63781998 (- strand)
Length: 3155
Functional Information:
Description: Similar to transcription initiation factor TFIID subunit 9-like isoform X2. [XP_004508112.1, Cicer arietinum]
GO: Biological Process: DNA-dependent transcription, initiation (GO:0006352)
Molecular Function: protein heterodimerization activity (GO:0046982)
InterPro: Transcription initiation factor TAFII31 (IPR003162)
Histone-fold (IPR009072)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:65.04,34.44,12.35,13.14,15.69,16.19,11.25,10.53
Arabidopsis thaliana homolog: AT1G54140.1
Automatic updates:
Name: NM_001248657 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527659 (LOC100527659), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249456 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max transcription initiation factor TFIID subunit 9-like (LOC100306277), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:63778844..63779181 (- strand)
Length: 338
Type: three_prime_UTR
Position: Chr01:63779182..63779451 (- strand)
Length: 270
Type: CDS
Position: Chr01:63781426..63781689 (- strand)
Length: 264
Type: CDS
Position: Chr01:63781690..63781998 (- strand)
Length: 309
Type: five_prime_UTR

>Vigan.01G510000.01 class=Sequence position=Chr01:63778844..63781998 (- strand)
CACCATGGGT ACTGTAAAGT AACAACTCCC CCTTCTACGA AGAAAAATTA AATTTCTGTT GAACGATGGG CAGACAGAAA
GATAAAACTG GGAAGTGCGA ATAACAAAGC CCATGGGCCA CAGTGTTTTC ATTTGAGCCT TTTAAAATTC CGACTCACGA
GGCCCATGCA AAAGGAAGTT TTCGTGCCCT AGACTTCTCC CAAAGTCTTT CTAGGCGAAT AACCAGCATC CGTCCGACAC
CGTCCACGGC GATTCCGGCC ACCGTGCGTT TGAATTACAT TTTGTCTTCC GGTGGAGCAG TAGCGAGGTA TGGGTGACAA
AGACGAAGAG TCGGGAATGC CAAGGGATGC AAAGATTGTG AAGTCTTTGT TGAAGTCAAT GGGCGTGGAG GAGTACGAGC
CTCGCGTCAT TCACAAGTTC CTTGAACTGT GGTATCGATA CGTCGTCGAT GTATTAACCG ATGCACAAGT CTATTCAGAG
CACGCCGGAA AATCCTCAAT CGATTGTGAC GATGTCAAGC TTGCGATTCA ATCCAAGATT AACTTCAGTT TCTCGCAACC
ACCACCTCGT GAGGTAATAA CAGTAATTAA TAATTCGCCT TTCCAATTGT TCAACTTTGT TTCATGTGAA TTTATGGTTA
TAAACACTTA TGAGAGAAAA AAACAGGGAT TCTTTTTTGT TGTCTGAGGT TAAAAGTCAA GTGTGTTAAT TTTGTTGGCT
TAATTGGGTG TGCTGATAGT TTGAAGCAAT TTGCTCAAGT TTGCAAGAGT TAAGGTAGTG TGAAAGGTTG CCTTGTTTGT
GTGAAGTTTA AATCTTTGTG TTGCAACTCA AGCAAAGCCC ACCACAGGAC TTGAAATAGT TGGGTTCTCT TACTTCCAAA
GATTAATTTT CTTTTTATTA CTAGGTTTGG TAATCGTGTG TCAAATGATG ACCACACACA TTTATATTCA TATTGAGAAT
AGTGTGTTCT GTGATATCCC TATCATAGGT TAATTTTCAA TCCAATCATA TAGATAATAC ATGTGCTAAA ACTAGCATCT
ACAAGTGCTG CGTCTTCTAT ATTTAACACT TCCCCTTTAA ACTGGAGCTC ATGGTCACTT GCATCAAGCT TTTTACGAAT
GTGAGAAAGG GGATTTTTGT TGTTCGACAT ATGGTTAGAT GCACCATAGC AAAGAATATA TGAACCAGGA GAGGAGGATT
GGTGCATACT TTTATGGAAA ACTGAGTAAT TGGGCATCCA TATGAATGTG TCTTGTTGAT CACTGTGCAA GGGCCTTATG
GCTCTGATAC ACTCCCCAAT TTTGACAGAT CTTGATTTGT AGCTGCAGGC AGAAACCATC TGGAATTAGA AAGCAAATCT
GCAATTTTTA CATTTTTTGG ATCATAGACA ACCCTATGAT CCGCTTGCCA TACATGCCTC CCAACTTGGT TTCATTGCCA
AGAATCATGT ATATCTTGTA GCTAACTCTC TAACTTGTAA AATTTTCCTA CAAACCTAGC TACCATTATT TGCTGGTTTA
ATACACCAAA AAATGCTTCT ATTTTTTAAA ATCATTGTAT GTAAGATACA AACCTGGATA GAAGGACTTT TTAGCCTGAA
CCCGGACATG CTGCTTCATA GCAGCTAGCT TTATTCCACT CCATTGAGGA GGTCTGAGCT CCTTCTTTAA AAGGCATCAA
ATTTTCTATC AATATTCCCT TTGTACTTGT ATCAGGAGGA CTAGACCTTA AGAACCATCT GCAGATCTTA TCCACTCTCT
TCAAATCAAA ACCTGCACTG ACAGTATGGA CAGAGTACTC CAGTAAACTT GCATGACCAG TTGTAGAGCG TATTGGATAG
AATGACTTAA CACCTAAAAG GCAGTTGTTT TTCTCATGTT TTGGAGAATA TTATTTGGGT TGTTCTAGAC TTTGACTGAC
CAAGTTTACA TGAAACTGTG AATGAATATA GTATCCACTC GAGTCTGTCT AAGTTTTTCT AGCGAGTTTA TGTTCTTTGC
CTTGAATTGT AAACTAGCAC AATTATGTAC ATTTCAATCT GACAACCGTG GCACAAGTTC CTGTGCCATA TAGTTTTTAT
AAATTTATTT TTAAATTCAT GTAAATTATT CTTGTCTTCT TTTCTTTTGT GTGAAAAGCG TCCACCTTTC TATGTTGCAG
TTTCATTACT AGGTTGCAGA TATTAATCTT CTACTAATTT TTAATATTCA TTTGTTTGAG AATCATGGCT GAGATAGCCT
TTTCTAAATT ATATAGAAAC ATTTTTTCTA AGATTCATTT TATTAGTTAC TAATTACCAT GTCATGAGCT GCAATCTGGA
ATTATTTGTT TGCGTAGAAG TCATCTGTCT CTTTGGTGAT CCAATACCAT CTGCACTTAA TTAGGAAATG AATTTTTAGT
TTAATTCAAC TTATAAAGTG AAATTTATAT TCAGTTATAT ATTATAATTT AGTCATATTT CTAATCAATA TAGGATCTCC
AACACTCTTT TCCATCAAAT ATTATGTCTT CTTGAAAAAT AAAATGTTTA ATATAATCAC TTGCCAGGTG CTGCTGGAGT
TGGCTCAGAA CCGCAACAAG ATACCATTGC CAAAGACTAT AGCAGGACCC GGTATCCCAC TTCCGCCTGA CCAGGACACA
TTAATCAGTC CAAACTACCA GTTTGGAATT CGAAACAAAA GGCCTGCCGA ACCTCTAGAA GAAACAGAGG ATGAAGAAAC
TACCATTCCC AATCCCACTC AGGAAGACAA GGTAGAGCTG CAGCAGAATC CCCATCAGAG AGTTTCATTT CCCCTGCCCA
AACGCCAAAA GGATTAATTT GAATTCCCTT ATGTGACATG TTTTAGTCTA ACTTTTGTGT AATTGTTGTA CAACAGTATT
ATTAGCTACA AAATCTCTAT AAACGATACC ATGTTTGTTT TATTGTGTAA CATTCACTAG GTTTTGACAT TATAATGAAA
TGAAAAAGTT TCCAAACGGT TCATTCTGCT TGGAATATGT ACATGTGATT CGTTTCAAAG TCCATGTGAA CATTGTCTGT
CGGTTGGTTT GGAGCTTGCA AACTGTGAAA TGACATTCAA TTTAAAAAAT TTGTAATGAG TTGAGGTGTT TTTTCTGTTT
TCAGTTAGGT TTGTATATAG AAAATTTGAG CTGAG

>Vigan.01G510000.01
CACCATGGGT ACTGTAAAGT AACAACTCCC CCTTCTACGA AGAAAAATTA AATTTCTGTT GAACGATGGG CAGACAGAAA
GATAAAACTG GGAAGTGCGA ATAACAAAGC CCATGGGCCA CAGTGTTTTC ATTTGAGCCT TTTAAAATTC CGACTCACGA
GGCCCATGCA AAAGGAAGTT TTCGTGCCCT AGACTTCTCC CAAAGTCTTT CTAGGCGAAT AACCAGCATC CGTCCGACAC
CGTCCACGGC GATTCCGGCC ACCGTGCGTT TGAATTACAT TTTGTCTTCC GGTGGAGCAG TAGCGAGGTA TGGGTGACAA
AGACGAAGAG TCGGGAATGC CAAGGGATGC AAAGATTGTG AAGTCTTTGT TGAAGTCAAT GGGCGTGGAG GAGTACGAGC
CTCGCGTCAT TCACAAGTTC CTTGAACTGT GGTATCGATA CGTCGTCGAT GTATTAACCG ATGCACAAGT CTATTCAGAG
CACGCCGGAA AATCCTCAAT CGATTGTGAC GATGTCAAGC TTGCGATTCA ATCCAAGATT AACTTCAGTT TCTCGCAACC
ACCACCTCGT GAGGTGCTGC TGGAGTTGGC TCAGAACCGC AACAAGATAC CATTGCCAAA GACTATAGCA GGACCCGGTA
TCCCACTTCC GCCTGACCAG GACACATTAA TCAGTCCAAA CTACCAGTTT GGAATTCGAA ACAAAAGGCC TGCCGAACCT
CTAGAAGAAA CAGAGGATGA AGAAACTACC ATTCCCAATC CCACTCAGGA AGACAAGGTA GAGCTGCAGC AGAATCCCCA
TCAGAGAGTT TCATTTCCCC TGCCCAAACG CCAAAAGGAT TAATTTGAAT TCCCTTATGT GACATGTTTT AGTCTAACTT
TTGTGTAATT GTTGTACAAC AGTATTATTA GCTACAAAAT CTCTATAAAC GATACCATGT TTGTTTTATT GTGTAACATT
CACTAGGTTT TGACATTATA ATGAAATGAA AAAGTTTCCA AACGGTTCAT TCTGCTTGGA ATATGTACAT GTGATTCGTT
TCAAAGTCCA TGTGAACATT GTCTGTCGGT TGGTTTGGAG CTTGCAAACT GTGAAATGAC ATTCAATTTA AAAAATTTGT
AATGAGTTGA GGTGTTTTTT CTGTTTTCAG TTAGGTTTGT ATATAGAAAA TTTGAGCTGA G

>Vigan.01G510000.01
ATGGGTGACA AAGACGAAGA GTCGGGAATG CCAAGGGATG CAAAGATTGT GAAGTCTTTG TTGAAGTCAA TGGGCGTGGA
GGAGTACGAG CCTCGCGTCA TTCACAAGTT CCTTGAACTG TGGTATCGAT ACGTCGTCGA TGTATTAACC GATGCACAAG
TCTATTCAGA GCACGCCGGA AAATCCTCAA TCGATTGTGA CGATGTCAAG CTTGCGATTC AATCCAAGAT TAACTTCAGT
TTCTCGCAAC CACCACCTCG TGAGGTGCTG CTGGAGTTGG CTCAGAACCG CAACAAGATA CCATTGCCAA AGACTATAGC
AGGACCCGGT ATCCCACTTC CGCCTGACCA GGACACATTA ATCAGTCCAA ACTACCAGTT TGGAATTCGA AACAAAAGGC
CTGCCGAACC TCTAGAAGAA ACAGAGGATG AAGAAACTAC CATTCCCAAT CCCACTCAGG AAGACAAGGT AGAGCTGCAG
CAGAATCCCC ATCAGAGAGT TTCATTTCCC CTGCCCAAAC GCCAAAAGGA TTAA

>Vigan.01G510000.01
MGDKDEESGM PRDAKIVKSL LKSMGVEEYE PRVIHKFLEL WYRYVVDVLT DAQVYSEHAG KSSIDCDDVK LAIQSKINFS
FSQPPPREVL LELAQNRNKI PLPKTIAGPG IPLPPDQDTL ISPNYQFGIR NKRPAEPLEE TEDEETTIPN PTQEDKVELQ
QNPHQRVSFP LPKRQKD*