GBrowse Details

Vigan.01G509400.01

Basic Information:
Name: Vigan.01G509400.01
Multiple alignment
Variant Information
Position: Chr01:63702233..63705711 (+ strand)
Length: 3479
Functional Information:
Description: Similar to 30S ribosomal protein S1, chloroplastic. [XP_008223432.1, Prunus mume]
GO: Biological Process: translation (GO:0006412)
Cellular Component: ribosome (GO:0005840)
Molecular Function: RNA binding (GO:0003723)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein S1 (IPR000110)
Ribosomal protein S1, RNA-binding domain (IPR003029)
Nucleic acid-binding, OB-fold (IPR012340)
RNA-binding domain, S1 (IPR022967)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:13.59,5.70,40.14,235.43,3.94,41.04,6.66,31.88
Arabidopsis thaliana homolog: AT5G30510.1
Automatic updates:
Name: NM_001252951 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 30S ribosomal protein S1, chloroplastic-like (LOC100812847), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:63702233..63702322 (+ strand)
Length: 90
Type: five_prime_UTR
Position: Chr01:63702323..63702622 (+ strand)
Length: 300
Type: CDS
Position: Chr01:63702736..63703011 (+ strand)
Length: 276
Type: CDS
Position: Chr01:63703105..63703185 (+ strand)
Length: 81
Type: CDS
Position: Chr01:63703690..63703971 (+ strand)
Length: 282
Type: CDS
Position: Chr01:63704039..63704149 (+ strand)
Length: 111
Type: CDS
Position: Chr01:63704945..63705031 (+ strand)
Length: 87
Type: CDS
Position: Chr01:63705441..63705545 (+ strand)
Length: 105
Type: CDS
Position: Chr01:63705546..63705711 (+ strand)
Length: 166
Type: three_prime_UTR

>Vigan.01G509400.01 class=Sequence position=Chr01:63702233..63705711 (+ strand)
GATGTTAAAC ATTATCCTGT TTGTGAAAGT TTGAGGAAAA AGTTAGAGTG ATAAGAACGG GACATTATCC GTAGCAATGG
CACCACACAA ATGGCTTCTC TTGTTCTTCA ATTCACTGCT CTCAAGTGCT CTCCACTCTC TTCTTCTTTT CTCTCCCAAC
CTTCCCTTTT CACCCAACAT CGCCATAACC AAAGGCGCGC TTCAACTTCC ATAGTCAACT CTGTAGCATT GGCCAATGCA
CAGAACAAAG AGAGAGTCCA GCTCAAGAAG CTCTTCGAAG AAGCCTATGA GAGATGCCGT ACTGCTCCCA TGGAAGGGGT
CTCCTTCACC CTCGAAGATT TCACTGCTGC TCTCGACAAG TATGATTTTG ATTCTGAAGT TGGCTCCAAG GTCACTCTCG
CACTTCTTCT TCTTCTTCTT TTCAATTCAA TTCTTAATTG GGTCGTCGGC AAACTAAGAA AAATCGTCTT TTTAATGAAC
ATTGGGTTGC GGGTTTGGGT CAGGTTAAAG GCACTGTGTT CTACACAGAT AACAATGGAG CAGTTGTTGA CATCACTGCA
AAGTCCTCGG CGTATTTGCC GCTGCAAGAA GCGAGCATCC GCAGGGTTAG GCACGTGGAA GAGGCGGGCA TAGTTGCTGG
ATTGAGAGAG GAGTTTTTGA TCATTGGTGA GAATCAAGCG GATGATAGCT TGATCTTGAG TTTAAGGTCG ATTCAGTATG
ATCTTGCATG GGAACGTTGC AGGCAGCTTC AGGCAGAAGA TGCTGCTGTC AAGGGTAAGG TGGGTTTGTC GTACTACCGA
ACTGTGTTGG CTTCGGTTAT ATCGTATCAC TCAAGCAATA AGGTTATTTT GATAAGATTA TTGTATTGAC AGATTGTGGG
GGTGAACAAA GGTGGAGTGG TGGCTGAGGT TGAAGGGCTT AGAGGGTTTG TTCCATTGTC ACAATTGTCA ACGGTTAGCT
TTTGACTTGA GCTACATTCA CATTTATGGA CTCACTAATT TTGATTCTCT GTTGGGTTTT TCATGCTGTG CTGTGTCTTT
GAAATACATT GATAAGCATG ATGTTTTATA ATATATCAAA AAGATTTTTA AAGCTCCAAC AAAAACCCAG CAAAGAATCT
AGACTCAATC TAAACTTGCT CTGTATGCCA TGTAACAGGT CAAAAACCAT CTTATCAATG AATGAGTGCA CAACATTTAA
TAAGATTCCA TGTAGTCAGT AAAAAATAAC TTCCTATATT CTCATTGAAG TTGAAATTGA GTCGTGCATT TTTCTTCAAA
ACTTATTTGC TTCTACAAGT TATAAATTAT ATCATTTTGC AGACTAGAAA ATGAAACTTC TCATTTTCAT TTCTGTAATT
TCTGTCTTTC ATTTAGCTTC TAAGACCCTG GGTTATTATT TTTTATACCT TTATCAAGCA GCTGAAATTC TTCTCATTTT
GTTTATTATC TTCTCAGAAC TCCAATATAG AAGAGCTTCT TGAGAAGGAG CTTCCTCTTA AGTTTGTGGA GGTGGATGAG
GAACAATCTA GACTTGTCCT CAGTAACCGC AAGGCCATAG CTGGCAACCA GGCACAGCTA GGAATTGGTT CAGTGGTTAC
TGGCTCTGTT CAAAGCCTGA AGCCATATGG TGCCTTCATT GACATTGGTG GAATCAATGG CCTCCTTCAC GTTAGTCAGA
TCAGTCATGA CCGTGTAACT GATATCTCAA CTGTTCTTCA ACCTGGCGAC ATATTAAAGG TAAAACTATA GCGAGTAGTG
TAGATTTTTG TCTGGATTGG TCATAATAGT TTTACAATTT GTTTAGGTGA TGATCTTAAG TCATGACCGT GAGAGAGGTC
GAGTAAGTCT TTCAACTAAG AAGTTAGAGC CCACACCTGG AGACATGATC CGCAATCCAA AGATTGTCTT TGAGAAGGTA
TGTTATGAAC AAGCTCCTTG AATCTTTTAC TCATTGCATA AGTAAATTAT AACTTGTACT TTCAAATGCT TAAATTAAAA
ACTCCATTCA TTTCCACTTT AGCTATCTAG TGCCACAGTT TGACATCATA TAGGAAGCTT AAAAAAGAAG TTTCTTTTTT
TATTTTAGTT GTTGGAGATC ATTTATACAC ACCCACACCC ACACACAAGT GATAACCCTT ACTCTATTAG TGATTTTGAG
ATTGAGTTAA GCCTAAATGC AAATTCTAAA GTAGTATCCA AATTTATCTT AGTAATGGTT CTAGACCTAT TTGACCATCT
GTTATCTGTT GAAATTGAGA GAAACTCTAA TGTGAAAATA TTCTGTAAAA GGAACCCGTA GACTCGGCAG CTTATAGCTG
TTTTGTCAGA GCAAGAGCGG AAAAAGATAT AACTACCTGT AACTGAGGTT ACACATACAG ACACAGAAAT ACATGAGCAT
AGGCTTGTCT TAGCTAAAGG AGTAAAACTG TACTATAAAC TATTCGGCCA TTATTGGATC TTTAGAAGAT GCTCATTCAG
TCATGCAATT TTTACACTTA AAATTACGTT CACCCATTCA ACACTCAACC GTAGGGGTTG TTGGAAATTT TTACCCGATT
TCTAGAATCA AGTTAAGCGC ATACACTAAT TTCTAAAACT TTTTCCTTCG ATTTCTTTAA CATGTTTTAA ATCTATTTCA
AACCATTTTC ATTCGCTTTG CCATTTTTGA AGGGGAAGTC ACTCACGTAA CTCTGAACTT CTTGTTATAT AGGCTGAGGA
GATGGCTCAA ACATTCAGAC AGAGAATAGC CCAAGCAGAA GCTATGGCTC GTGCTGACAT GCTTAGGTTC CAGCCTGAGG
TATCTATGGA TTTTATTATT TCTTCAAAAT TCTTAATCTG GTAAAAAGGG AGAAACAGAA AATGATTAAA GTGAGACTAA
TATTGAAAAA CATAGCAAAG TCAGGTTCTT GCTGCAGCTG AAGATTGTTG GGTTTCTGAA ATGACAAGAA TAAAATTATT
TAAAATTGGA TCTTACTAGA CAAGGAAAGG AATGTCACAG TGCATGTGCA TAAAAATGGA ATTTGCTACT TCGGACTTGT
TTCTGATTCA CTTACCTGAA GCGAGATACG AACATATTTC TGCTTCCGGC AACTAGAAAT TTATCTTGGG GTTTGGTATC
TTCCTATAAT ATCCATACAT AGATGGAAGA GATATGATAG AAGAGCATTT CATGAACCTG TCACTCAATA TTCCATTTTG
ATTCGCAGAG TGGATTGACT CTCAGCAGTG ATGGGATCCT GGGACAATTT ACTTCAGACT TGCCTGAAGA GGGACTAGAT
CTGACTGAGG TGCCACCAGC TGAAGCATCA TGATTGAGAA TTTCGAGGTT TTTTTTGCTT ACATTTTATA ATGTTGCTTG
TAACAATCCA ATATTGTTGT CGAACGATGT ATTGATGCAA ATGTATTATT GAGTCAAATA AATAGAACTA TTAATACTAT
CATTACACTA TGAAGTGATT CTTCACTAGA ATATATTCA

>Vigan.01G509400.01
GATGTTAAAC ATTATCCTGT TTGTGAAAGT TTGAGGAAAA AGTTAGAGTG ATAAGAACGG GACATTATCC GTAGCAATGG
CACCACACAA ATGGCTTCTC TTGTTCTTCA ATTCACTGCT CTCAAGTGCT CTCCACTCTC TTCTTCTTTT CTCTCCCAAC
CTTCCCTTTT CACCCAACAT CGCCATAACC AAAGGCGCGC TTCAACTTCC ATAGTCAACT CTGTAGCATT GGCCAATGCA
CAGAACAAAG AGAGAGTCCA GCTCAAGAAG CTCTTCGAAG AAGCCTATGA GAGATGCCGT ACTGCTCCCA TGGAAGGGGT
CTCCTTCACC CTCGAAGATT TCACTGCTGC TCTCGACAAG TATGATTTTG ATTCTGAAGT TGGCTCCAAG GTTAAAGGCA
CTGTGTTCTA CACAGATAAC AATGGAGCAG TTGTTGACAT CACTGCAAAG TCCTCGGCGT ATTTGCCGCT GCAAGAAGCG
AGCATCCGCA GGGTTAGGCA CGTGGAAGAG GCGGGCATAG TTGCTGGATT GAGAGAGGAG TTTTTGATCA TTGGTGAGAA
TCAAGCGGAT GATAGCTTGA TCTTGAGTTT AAGGTCGATT CAGTATGATC TTGCATGGGA ACGTTGCAGG CAGCTTCAGG
CAGAAGATGC TGCTGTCAAG GGTAAGATTG TGGGGGTGAA CAAAGGTGGA GTGGTGGCTG AGGTTGAAGG GCTTAGAGGG
TTTGTTCCAT TGTCACAATT GTCAACGAAC TCCAATATAG AAGAGCTTCT TGAGAAGGAG CTTCCTCTTA AGTTTGTGGA
GGTGGATGAG GAACAATCTA GACTTGTCCT CAGTAACCGC AAGGCCATAG CTGGCAACCA GGCACAGCTA GGAATTGGTT
CAGTGGTTAC TGGCTCTGTT CAAAGCCTGA AGCCATATGG TGCCTTCATT GACATTGGTG GAATCAATGG CCTCCTTCAC
GTTAGTCAGA TCAGTCATGA CCGTGTAACT GATATCTCAA CTGTTCTTCA ACCTGGCGAC ATATTAAAGG TGATGATCTT
AAGTCATGAC CGTGAGAGAG GTCGAGTAAG TCTTTCAACT AAGAAGTTAG AGCCCACACC TGGAGACATG ATCCGCAATC
CAAAGATTGT CTTTGAGAAG GCTGAGGAGA TGGCTCAAAC ATTCAGACAG AGAATAGCCC AAGCAGAAGC TATGGCTCGT
GCTGACATGC TTAGGTTCCA GCCTGAGAGT GGATTGACTC TCAGCAGTGA TGGGATCCTG GGACAATTTA CTTCAGACTT
GCCTGAAGAG GGACTAGATC TGACTGAGGT GCCACCAGCT GAAGCATCAT GATTGAGAAT TTCGAGGTTT TTTTTGCTTA
CATTTTATAA TGTTGCTTGT AACAATCCAA TATTGTTGTC GAACGATGTA TTGATGCAAA TGTATTATTG AGTCAAATAA
ATAGAACTAT TAATACTATC ATTACACTAT GAAGTGATTC TTCACTAGAA TATATTCA

>Vigan.01G509400.01
ATGGCTTCTC TTGTTCTTCA ATTCACTGCT CTCAAGTGCT CTCCACTCTC TTCTTCTTTT CTCTCCCAAC CTTCCCTTTT
CACCCAACAT CGCCATAACC AAAGGCGCGC TTCAACTTCC ATAGTCAACT CTGTAGCATT GGCCAATGCA CAGAACAAAG
AGAGAGTCCA GCTCAAGAAG CTCTTCGAAG AAGCCTATGA GAGATGCCGT ACTGCTCCCA TGGAAGGGGT CTCCTTCACC
CTCGAAGATT TCACTGCTGC TCTCGACAAG TATGATTTTG ATTCTGAAGT TGGCTCCAAG GTTAAAGGCA CTGTGTTCTA
CACAGATAAC AATGGAGCAG TTGTTGACAT CACTGCAAAG TCCTCGGCGT ATTTGCCGCT GCAAGAAGCG AGCATCCGCA
GGGTTAGGCA CGTGGAAGAG GCGGGCATAG TTGCTGGATT GAGAGAGGAG TTTTTGATCA TTGGTGAGAA TCAAGCGGAT
GATAGCTTGA TCTTGAGTTT AAGGTCGATT CAGTATGATC TTGCATGGGA ACGTTGCAGG CAGCTTCAGG CAGAAGATGC
TGCTGTCAAG GGTAAGATTG TGGGGGTGAA CAAAGGTGGA GTGGTGGCTG AGGTTGAAGG GCTTAGAGGG TTTGTTCCAT
TGTCACAATT GTCAACGAAC TCCAATATAG AAGAGCTTCT TGAGAAGGAG CTTCCTCTTA AGTTTGTGGA GGTGGATGAG
GAACAATCTA GACTTGTCCT CAGTAACCGC AAGGCCATAG CTGGCAACCA GGCACAGCTA GGAATTGGTT CAGTGGTTAC
TGGCTCTGTT CAAAGCCTGA AGCCATATGG TGCCTTCATT GACATTGGTG GAATCAATGG CCTCCTTCAC GTTAGTCAGA
TCAGTCATGA CCGTGTAACT GATATCTCAA CTGTTCTTCA ACCTGGCGAC ATATTAAAGG TGATGATCTT AAGTCATGAC
CGTGAGAGAG GTCGAGTAAG TCTTTCAACT AAGAAGTTAG AGCCCACACC TGGAGACATG ATCCGCAATC CAAAGATTGT
CTTTGAGAAG GCTGAGGAGA TGGCTCAAAC ATTCAGACAG AGAATAGCCC AAGCAGAAGC TATGGCTCGT GCTGACATGC
TTAGGTTCCA GCCTGAGAGT GGATTGACTC TCAGCAGTGA TGGGATCCTG GGACAATTTA CTTCAGACTT GCCTGAAGAG
GGACTAGATC TGACTGAGGT GCCACCAGCT GAAGCATCAT GA

>Vigan.01G509400.01
MASLVLQFTA LKCSPLSSSF LSQPSLFTQH RHNQRRASTS IVNSVALANA QNKERVQLKK LFEEAYERCR TAPMEGVSFT
LEDFTAALDK YDFDSEVGSK VKGTVFYTDN NGAVVDITAK SSAYLPLQEA SIRRVRHVEE AGIVAGLREE FLIIGENQAD
DSLILSLRSI QYDLAWERCR QLQAEDAAVK GKIVGVNKGG VVAEVEGLRG FVPLSQLSTN SNIEELLEKE LPLKFVEVDE
EQSRLVLSNR KAIAGNQAQL GIGSVVTGSV QSLKPYGAFI DIGGINGLLH VSQISHDRVT DISTVLQPGD ILKVMILSHD
RERGRVSLST KKLEPTPGDM IRNPKIVFEK AEEMAQTFRQ RIAQAEAMAR ADMLRFQPES GLTLSSDGIL GQFTSDLPEE
GLDLTEVPPA EAS*