GBrowse Details

Vigan.01G506300.01

Basic Information:
Name: Vigan.01G506300.01
Multiple alignment
Variant Information
Position: Chr01:63399069..63403719 (+ strand)
Length: 4651
Functional Information:
Description: Similar to Uncharacterized protein. [I1LYG4, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Target SNARE coiled-coil domain (IPR000727)
Sec20 (IPR005606)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:51.29,31.93,29.09,30.23,43.86,21.87,35.23,34.99
Arabidopsis thaliana homolog: AT3G17440.1
Structure :
Position: Chr01:63399069..63399430 (+ strand)
Length: 362
Type: five_prime_UTR
Position: Chr01:63399431..63399507 (+ strand)
Length: 77
Type: CDS
Position: Chr01:63400249..63400341 (+ strand)
Length: 93
Type: CDS
Position: Chr01:63400766..63400859 (+ strand)
Length: 94
Type: CDS
Position: Chr01:63401135..63401172 (+ strand)
Length: 38
Type: CDS
Position: Chr01:63401440..63401537 (+ strand)
Length: 98
Type: CDS
Position: Chr01:63402379..63402458 (+ strand)
Length: 80
Type: CDS
Position: Chr01:63402525..63402581 (+ strand)
Length: 57
Type: CDS
Position: Chr01:63402673..63402765 (+ strand)
Length: 93
Type: CDS
Position: Chr01:63402849..63402923 (+ strand)
Length: 75
Type: CDS
Position: Chr01:63403262..63403366 (+ strand)
Length: 105
Type: CDS
Position: Chr01:63403367..63403719 (+ strand)
Length: 353
Type: three_prime_UTR

>Vigan.01G506300.01 class=Sequence position=Chr01:63399069..63403719 (+ strand)
AAAACAATAA AATATTATCT GACAACGGTT CCTTTCCTAA TTCCATCGTT TGTTCCATCT CATTGTACAG CACACAGAGG
TCGAACTTCC TCGTTGTGTT GTGGTGTGTT CTGTTTCGTG TGTTGTTCTG CCTCTGCTCT CTCTTTCTCT TCCTCTCCCA
CTCTCTGTTC GTTCACTTTT CAATTTCATC CAATCCAAAC CTTCCACATT CTCCTTCTGC ATTCTCTGCT CCTTTCTCAA
CAATTATTAT GCACCATCGT CCTAATCGTC TTCTCTCACC AACCGACTAG GGTTTGTCTC CCACGTTAGG TTTTTCGTTT
TTTTTGCCGG GATTTTGGGG GCAGACTTAA TCTCCGGCAG CTATGGCCTC CAATTTGCAG ATGAGTCCTG AGGTGGAGCA
GATCCACGGT GAAATTCGCG ACAACTTTCG TGCTCTTGCG TATGCCCTCT CTTAATTCTC TCTTGCTATC GTTATGTGTA
TCACCCTACT CCTTGAGATT GAGAAATTAA TTTGATTCAT GATAATACTA GTAATGGTAG ATGTTGTGAT TTGTGATTTT
ATGATTGTTG ACATTGGGGG ATTGATTGAT TACCCTCTGA AATGTGATTT TCTGTGATTT CAGACTTGGG GTTATTTGGC
CCCTAGGTTT GGGGATGTTG TAGCTTTTCT GTTCAGGTGA TTCGTTTGTA TTATTTATGC AGACGAGAAG AGTTTTCATC
TTGACTTTAA CGGGTAGTGA AACTATAGGG TGGAGTTGTT TGTTTTTTGT TTACCACTAC ACATGTTTTC TTCGGTCACG
GTGGTTTATT TTTCGTCTCT TGAACCTCTG AATATTACTG TGTTGGACTT GGATGACTTG GATTTCCCTC TCCCATTCGA
ATGATGGGTT GAACCAGTTG TTGGTAGTGA CGTTATCTTT CCTTTGCTTG TCTTTATACA AGTGATTTGT GGCTTGGTCT
TACTTTTCTT TTGCTGTAGT CTCGTGATAA TGTATCCCTG GTTAGTGTTA CGATCATAGT TGTTTTAATG CCGGTTCACT
GAAACGAAGG AACCGGGGAT TAATGACTTT TGTGAATAGA TCACATTGTT TAAGCAGTTG CGGATGTGCT ATAATGTGGA
TGATATGTAA TTTGTTGCTT AGTTTATTTA TTGTTGACAT GCTTCACCTT TTGCATCCAG AAATGGCTTC CAGAAGTTGG
ATAAGATTAA AGATGCCAAT AGACAAACTA ATCAGCTTGA AGAACTTACC GAAAAGATGA GGGAGTCCAA AAGGTTAGCA
GTTATGTATT TTATATTTTT AATCTTGTCA TCACTCGCTG TAAACTGTAT CTCTCTGTAC AAGATAATAA AATTTTGAGT
GGGAGGCAAA TGCACGCTTT CCAAAATATC ACCTTTTCTT CTCTCCATAG GTTGGCATGC TGGAAAATTT GCTTATTATT
GTTAAATGTA ATAGCAAAAG CTCTGTAATG GAATTTACAC CTTATACCAA TTTCCCGGGA TTGGATGATG CTAACATGGA
AAACAAACCT ATTCTATATT GAATATTTTA TGGAAAAGTA ATGGATGGCT ATTTTGTTGT TTATCATGCT GTCGATGTGC
TTTCCAGACT TTTTATTTGT CAGGTAGACT TAATTTGCCC CTTTTTCAAT GTCCCATTTC TGAAAGAAGT GAAATTCCCT
GTGATTAATG GTTTCAGGTT GATAAAGGAG TTTGATCGTA AAATTAAAGA TGAAGAGGGG GGAAATCCCC CAGAAGTGAA
TAAGCAACTG AATGATGAAA AGCAATCAAT GGTCAGTACC CAGAACACTT ATTTTCAGTT TTTCCTTGCT CGTGTTGAAA
ATTCTGTATC TAATTCTTCA AAGTTTGAAT TGACATACCA GCTTATTCTG TTTTTGATGC GACTTTACTA AAAATTCCTT
TGAGTATTGT CAAGACACTT AAAGTGATTC CCAGACGATC AGAAAATAGC TTGTGTCTGA GGATTGTCCA CAGTTGTTTC
ATATTGCATG TGCATTTAAT CAAACAGCCA AGTCTTTGTG TTTGCTAATG TACATTCTTC TTGCAGATCA AGGAGCTAAA
CTCATATGTG GCATTGCGAA AAACGTAAGT TTGTCTTTAT TCTTCCATTT CTTTCTTTAA CATATTCAAA TTGATTTTAT
TCAAAGTTAT GGATCAAATC AGGTTGTAAA GACCAATTTT CTTTATGGGC GTATTCAATT TTCTAAATCA TGAATTCATT
ATAAATGTTG CTTCAAAGAT TAGCAGAACC AATAAAGCAA AATTCAGTTT CCCTTTTTGT TGACTCTACT GCTAAATAAG
GTTTTGGAGC TTTGAAAGGA GGATTTATGC TATCACTTCA ATGATTAACA GGTACATGAA CACCATTGGA AATAAAAAAC
TTGAACTTTT TGACAATGGA GCTGGAGCAA GCGAACCTAC AGCAGATGAA AACGTTCGAC TGGCATCAGG TAAGATATTT
GATGGAATTG GTAACTGGTG CAATGAGGTG TTGTCAGAAC TTTGCCATAT TAATGAAATT GATTTCACAG TATATTTGTG
CTTCTGTTGT AGTAAGTTTC CATATAGCAT TTGTGCATTG TGTGATTACT TATTTTTGCA AAGGCATACT TCAGGCTTTT
ATCTTTGTTG GTGTGTCCTT ATAAGATTGA TCTACTTTTG TTTGAGTTGT TTCTACAATT GAAGAGCAAT TAGCTGTAAG
CTGTTTTCAT AAGCTATCTT GGAGAGCTTG TTGAATAGCT GCAGGCTGTG ACGCAATTCA CAGGTGGCGA GAGCAGCAGC
GTTATCGGGG GTACATGAAC CAAAAAGGAG GTTGTGGCTT AAAAAAAATA GAAATATAAT TAAAACTGAG AATAGAAACC
AGAAGAGAAA AAAGAAGTAG GAATCGTATG CCTCAGGTTG GATCGGGTTG TGCTGCCCCT AGGCTGCTTC TTTGTGAAGA
TGTGTGCAGT ATGGGATTGC AATTTCTGCC ATGGCCATTT CGATCCACCA TTCTGTGACA CCCAATATGA CATAGTGCTG
CCATGTAAAC CCTGATTGTC TCTACCATGT TCTGTCGATC AACTTTCCAT GGCATGACTG CCTTTTTTCA GTAACACTGC
CAGAGCTATT TTGTGTGTTC TCTTAAGTCA CAGTGCCTAC ACATTCACTT ATGTCATGAG GCAACTTGTC CACAAGCTCT
TCCAAACACT CCCATTGCAT GCTTATTTAT ATTTTTGTGT AGCAAGTATT AAAGTAACTG GTAAATGTCC TAATTATCTT
AGCATTAATG CCTTTTTGCT TCTATTATAG AAATGTCAAA TCAAGAGCTA ATCAATGCTG GGACAAAGAC AATGGATGAA
ACTGACCAGG CTATTGAGAG ATCTAAGCAG GTGAGTCACA TCATACTTAC ACCTCCATTG CTGCTGGACC TTGTTCTTAC
TTATTTCAAA ATGTAGGTTG TACATCAAAC AATTGAAGTT GGCACCCAAA CTGCTGTTAC CTTGAAAGGC CAAGTAAGTC
TGATTTGCAT TGAGTATGCT AATATGAAGG GAAAAAGTGA TAGATAACAA TTTGACCTCT ATTTCTGTTT ATTAATTTTT
GCAGACTGAA CAAATGGGCC GTATTGTTAA TGAACTTGAT TCAATTCAGT TCTCAATTAA GAAGGCCTCC CAACTTGTTA
AGGAGATTGG TAGACAGGTT GGCTTCAATC GATTGCTTCA ATGCACTATT TACCTTTCTT CAAGACTGTC ATTGAACTAA
ATCGTATTTC CCTATTTCAG GTAGCTACAG ACAAGTGCAT CATGCTTTTT CTGTTCCTTA TTGTCTGTGG TGTGATAGCC
ATTATTGTCG TGAAGGTATC ATTTTCATGT CATCCATTAC TTTAATGAAT TTGTACTGGA TATTTATTTT CCTCTCATAT
TATGCTACAG TTTTTAAAGA ACTAAGATGC TCCACAATTT GTTTGAAAGA AGCCTTTTAC GAGAAATATT TGAAATAACT
TAATTTGGAA TATTGTGATA CAACACTAAC GTAGTGAGAA CTTATATTAC ATGATGATCC GCACTACTGA TTGACAATTA
AAGAAATGCT TATGTTCAAT GCGTCATGTA CAGATTTTCC GTTCTGCACT AATAAATGTT TCATATTTAT GCACAATACC
TACTGTTTCT GTTTTAACTG TTATCTTCTG TAGATTATAC ATCCCAACAA CAAAGATATT AGGGATATCC CGGGATTGGC
ACCTCCAGTT CCCACAAGGA GGCTTTTGTA TGCAAGGACA ACAGATCATT TCGATTAACT CTTATATTTG AACAAGAGTG
AACTGCGTCC TACTCCTACC AACTTGATAC TTGTTCTCAT TGCTGCGGAA GTTATAGGAT TGCTGTCTGG AGGCATTATT
TTGGTCTCTT CAATTAATTA AATATTGTAC ACTTGCATAC CCTTGTTTGT GATTTTATGT AAATCACACG AGAGCCTTCT
GCTTTTCTTT CTTGAGTGCC ATGTTTCGTT ATTGTAACAT TCCAAAAGTG TAGGACCAGA GAAAGTAAAT CTGTTAAATT
CGTTCTGTAT ATGTCTAATT CAAAGTGAGA TTTGCCCCTC CCCCTCCCCT ATTTCTCTTT AATGTACACA CATTCCGAAC
TCTGATGGAT T

>Vigan.01G506300.01
AAAACAATAA AATATTATCT GACAACGGTT CCTTTCCTAA TTCCATCGTT TGTTCCATCT CATTGTACAG CACACAGAGG
TCGAACTTCC TCGTTGTGTT GTGGTGTGTT CTGTTTCGTG TGTTGTTCTG CCTCTGCTCT CTCTTTCTCT TCCTCTCCCA
CTCTCTGTTC GTTCACTTTT CAATTTCATC CAATCCAAAC CTTCCACATT CTCCTTCTGC ATTCTCTGCT CCTTTCTCAA
CAATTATTAT GCACCATCGT CCTAATCGTC TTCTCTCACC AACCGACTAG GGTTTGTCTC CCACGTTAGG TTTTTCGTTT
TTTTTGCCGG GATTTTGGGG GCAGACTTAA TCTCCGGCAG CTATGGCCTC CAATTTGCAG ATGAGTCCTG AGGTGGAGCA
GATCCACGGT GAAATTCGCG ACAACTTTCG TGCTCTTGCA AATGGCTTCC AGAAGTTGGA TAAGATTAAA GATGCCAATA
GACAAACTAA TCAGCTTGAA GAACTTACCG AAAAGATGAG GGAGTCCAAA AGGTTGATAA AGGAGTTTGA TCGTAAAATT
AAAGATGAAG AGGGGGGAAA TCCCCCAGAA GTGAATAAGC AACTGAATGA TGAAAAGCAA TCAATGATCA AGGAGCTAAA
CTCATATGTG GCATTGCGAA AAACGTACAT GAACACCATT GGAAATAAAA AACTTGAACT TTTTGACAAT GGAGCTGGAG
CAAGCGAACC TACAGCAGAT GAAAACGTTC GACTGGCATC AGAAATGTCA AATCAAGAGC TAATCAATGC TGGGACAAAG
ACAATGGATG AAACTGACCA GGCTATTGAG AGATCTAAGC AGGTTGTACA TCAAACAATT GAAGTTGGCA CCCAAACTGC
TGTTACCTTG AAAGGCCAAA CTGAACAAAT GGGCCGTATT GTTAATGAAC TTGATTCAAT TCAGTTCTCA ATTAAGAAGG
CCTCCCAACT TGTTAAGGAG ATTGGTAGAC AGGTAGCTAC AGACAAGTGC ATCATGCTTT TTCTGTTCCT TATTGTCTGT
GGTGTGATAG CCATTATTGT CGTGAAGATT ATACATCCCA ACAACAAAGA TATTAGGGAT ATCCCGGGAT TGGCACCTCC
AGTTCCCACA AGGAGGCTTT TGTATGCAAG GACAACAGAT CATTTCGATT AACTCTTATA TTTGAACAAG AGTGAACTGC
GTCCTACTCC TACCAACTTG ATACTTGTTC TCATTGCTGC GGAAGTTATA GGATTGCTGT CTGGAGGCAT TATTTTGGTC
TCTTCAATTA ATTAAATATT GTACACTTGC ATACCCTTGT TTGTGATTTT ATGTAAATCA CACGAGAGCC TTCTGCTTTT
CTTTCTTGAG TGCCATGTTT CGTTATTGTA ACATTCCAAA AGTGTAGGAC CAGAGAAAGT AAATCTGTTA AATTCGTTCT
GTATATGTCT AATTCAAAGT GAGATTTGCC CCTCCCCCTC CCCTATTTCT CTTTAATGTA CACACATTCC GAACTCTGAT
GGATT

>Vigan.01G506300.01
ATGGCCTCCA ATTTGCAGAT GAGTCCTGAG GTGGAGCAGA TCCACGGTGA AATTCGCGAC AACTTTCGTG CTCTTGCAAA
TGGCTTCCAG AAGTTGGATA AGATTAAAGA TGCCAATAGA CAAACTAATC AGCTTGAAGA ACTTACCGAA AAGATGAGGG
AGTCCAAAAG GTTGATAAAG GAGTTTGATC GTAAAATTAA AGATGAAGAG GGGGGAAATC CCCCAGAAGT GAATAAGCAA
CTGAATGATG AAAAGCAATC AATGATCAAG GAGCTAAACT CATATGTGGC ATTGCGAAAA ACGTACATGA ACACCATTGG
AAATAAAAAA CTTGAACTTT TTGACAATGG AGCTGGAGCA AGCGAACCTA CAGCAGATGA AAACGTTCGA CTGGCATCAG
AAATGTCAAA TCAAGAGCTA ATCAATGCTG GGACAAAGAC AATGGATGAA ACTGACCAGG CTATTGAGAG ATCTAAGCAG
GTTGTACATC AAACAATTGA AGTTGGCACC CAAACTGCTG TTACCTTGAA AGGCCAAACT GAACAAATGG GCCGTATTGT
TAATGAACTT GATTCAATTC AGTTCTCAAT TAAGAAGGCC TCCCAACTTG TTAAGGAGAT TGGTAGACAG GTAGCTACAG
ACAAGTGCAT CATGCTTTTT CTGTTCCTTA TTGTCTGTGG TGTGATAGCC ATTATTGTCG TGAAGATTAT ACATCCCAAC
AACAAAGATA TTAGGGATAT CCCGGGATTG GCACCTCCAG TTCCCACAAG GAGGCTTTTG TATGCAAGGA CAACAGATCA
TTTCGATTAA 

>Vigan.01G506300.01
MASNLQMSPE VEQIHGEIRD NFRALANGFQ KLDKIKDANR QTNQLEELTE KMRESKRLIK EFDRKIKDEE GGNPPEVNKQ
LNDEKQSMIK ELNSYVALRK TYMNTIGNKK LELFDNGAGA SEPTADENVR LASEMSNQEL INAGTKTMDE TDQAIERSKQ
VVHQTIEVGT QTAVTLKGQT EQMGRIVNEL DSIQFSIKKA SQLVKEIGRQ VATDKCIMLF LFLIVCGVIA IIVVKIIHPN
NKDIRDIPGL APPVPTRRLL YARTTDHFD*