GBrowse Details

Vigan.01G502800.01

Basic Information:
Name: Vigan.01G502800.01
Multiple alignment
Variant Information
Position: Chr01:63116770..63119689 (+ strand)
Length: 2920
Functional Information:
Description: Similar to Uncharacterized protein. [D7RJ53, Glycine max]
GO: Biological Process: chromatin remodeling (GO:0006338)
Cellular Component: nuclear chromosome (GO:0000228)
InterPro: SNF5/SMARCB1/INI1 (IPR006939)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:10.81,12.46,8.57,19.39,15.88,18.70,21.45,10.15
Arabidopsis thaliana homolog: AT3G17590.2
Automatic updates:
Name: NM_001254365 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max chromatin structure-remodeling complex protein BSH-like (SNF5), mRNA.
PubMed ID: 25249442 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:63116770..63116951 (+ strand)
Length: 182
Type: five_prime_UTR
Position: Chr01:63116952..63117001 (+ strand)
Length: 50
Type: CDS
Position: Chr01:63117072..63117160 (+ strand)
Length: 89
Type: CDS
Position: Chr01:63117236..63117330 (+ strand)
Length: 95
Type: CDS
Position: Chr01:63117896..63117967 (+ strand)
Length: 72
Type: CDS
Position: Chr01:63118054..63118101 (+ strand)
Length: 48
Type: CDS
Position: Chr01:63118196..63118279 (+ strand)
Length: 84
Type: CDS
Position: Chr01:63118536..63118574 (+ strand)
Length: 39
Type: CDS
Position: Chr01:63118659..63118741 (+ strand)
Length: 83
Type: CDS
Position: Chr01:63118863..63118925 (+ strand)
Length: 63
Type: CDS
Position: Chr01:63119176..63119275 (+ strand)
Length: 100
Type: CDS
Position: Chr01:63119276..63119689 (+ strand)
Length: 414
Type: three_prime_UTR

>Vigan.01G502800.01 class=Sequence position=Chr01:63116770..63119689 (+ strand)
TAAAAACTGA AAAAAGAAAA ATAAAAATTA GACACAGAAA CTGCATAGTG GTAAGTAAGT GTGGGAAGAA GATATTTTTC
TAGTATATTG ATTGATTGAT TTTGTTTTGG GGGCGCAGAA GTTTGTTTGT GAACCTTTTG CATGAAAACG GCGTCGTAAT
CGTCCATTCG TATTGGGAGA GCATGAAAAC CCCGATTCCG GGTTTCTACC GAAACCCTGT AAAGTTCAGA ATGTAAGTTT
AAAAATTGAA ACTGATTGAT TTTGTTGGTT TTTGTAATGC GTAATGAATG ATTAATGCAC AGGCCAACTG CAGAGAACTT
GGTTCCCATT CGATTGGATA TCGAAATCGA AGGACAAAGA TACAAAGACG CATTCACTTG GAACCCTTCT GGTAATTTCA
AACAAAACCT GATCATCTAG CCGTTCTTGT TTTTTCATTT GCGTTGATTG AATTCCGACA CTGTAGATCC CGACTCCGAG
GTTGTGGTCT TTGCAAAAAG GACTGTTAAA GACTTGAAGC TCCCTCCCGC CTTTGTTACA CAAATTGCTC AATCTATTCA
AGTACACACA TCTCCATTTT TGTATGCTTT TCTTTATATT AGGTTTAATT TCTCTTTTAC AATGTTTTAG ACAAACTACT
TGTTTTAGAC CATCACATGC ACTTCTTTTT TTAACTCATT TTGGTTCCTA TAAGACACCC TACTGGTTCT TCGATTTTGA
ACGGCAGGAC TAAAATGTAT TTAAAATAAG GGATTAAATA TTGTAATTTT TAAGTATAGA GACTAAGGCG TGAAATTATA
TAGACATATG ATCTGTTTGA AGTCTTTCTT TTGTGAAAAT TTCTATAAGA AAAAAGTAAG AAAGAAACAT GAAATTTGTT
TTTCCATAAG GTATAATTAG TTTATAAATA AGTTAATTTA TAGAAGTTAT CTCCTATTAA CCTCTTTAAA GTTTGATTCC
TAACTTATAG ATAAACTAAT TTGTTTTTTT TTTATTTTTT TTCTTCAAGA AATGCTTATA GAGAAGTTTC ATCCAAATGA
ACTCATAGTT TTCAAATTAG CAGTTAAATC TTTATTATTA TTATTATTGT GCATTTAGCC TAATTTATGT TATCTTGTGC
TATCAGTCAC AGCTCTTGGA GTTTAGATCC TATGAAGGCC AGGATATGTA TGCTGGGGAG AAGATTGTTC CGATCAAGGT
CTCTCTTTGT TGCCATTTTG TGTTTCTCTT GTTTCATTCA GTGTTTGCTT TGCATTTTAA CAAAACGTTA TTTCTGTTTT
GCAGCTCGAT CTTCGTGTTA ATCATACGCT TGTGAAGGAC CAGTTTTTAT GGGTAAGGTT GGAGCACAGC ACAGGTGTTG
TGGTGTAACA TTACCGTGCT TGTTTAGGTT TATTTCGGTT TTGTGTCTAA AATGATTGAA TTCTAGGACT TGAACAACTT
TGAGAGTGAC CCTGAAGAGT TTGCTAGAAT CTTCTGCAAG GACATGGGCA TTGAAGATCC TGAGGTTGGA GTAAGTATAT
CCAATTTTCA TTAGTAATGA GTTAAAATAA TTTGATAGAG GCCTTGGGAG TATAATAGAA TTTTGTTACA TAGGCAAAAT
TATGTTATAG TAAAGAAACA ATTTTTTGTA ATGTAGGAAC TGTTTTCTTG TTTTTATCAA CGGAATTTTC TTTTTCTTTC
TGCCTTCTTT TCAAAATGCA CAAGCACACA GACATTCTTG AAAATTGAAA CACGCTAAAC TGTATAATGC TTCTTCTGCT
TTGCAGCCAG CTATTGCCTT TGCTATCAGA GAGCAACTTT ACGAAGTAAG TTCTATTGGT TTATTGATGT ATCATTTTCA
GGAATTATAT ATGGTCCGGT TACCACAGTC GTTATGTTTC CATATTTAGA TTGCAATTCA AAGTGTGGTC TCAGCAAGAG
AAAGCAGAAT GAGCAAGAAG GGTCGTCGAG GGGCTGAATA TACTCCGATC AGGTATTTTA TCATACATTT GTGTCAAGTT
TTTGCTGCGT GATAAGGGCA ATTTTATTAC AATTCTAAGT CAATATGTAT TTCGCAAGTC ATGTCTTTTT TCTCGTCAAT
GATCGTATGA CAGTAAAGGA GGTGCCGTAG CAGTGGACTT GGTGAAGTTA TTTGGTCCGA AATCTAGTGT AGTACGGTAA
GTCCGTCATA AATCCGAATC CTACCTACTA TTTAAAGCTT AAATTCATTG CCCTTCCAAC TAAAACCACT TTGTAACTAA
TTTTATGATT TTAAACTTAG CGACTCATAT CACATAAGGC ATTCAAGGGT TATTTGCGCC AGGAATAGAT ATGTTTGTGT
GGGTGTGTGT ATATATATAT AGTCTTGCAT ATGAAATTCA ATGAGAAGTT GACAAGTTTG AAGCATTTTT TCTTGAATGC
AAACAGGAAA AGAAAGGAGT GGGACGTATA TGAACCTATT GTGGACCTGC TTTCCAATGA GGAAGTTGAT GCCCTTGAAG
CAAAGGAAGA GAGAAATTTC AGGTGAATTG GCTCCGTGGT CAGCCACACC ATATCAGAAG GTTAGAGTTT GAAGTTTTTG
TATTATATGC AAGCTGGGTT TTTAGTACCA GGAATCATTG ATTATCATTT GATTTCGTTG GATGTAATCT TGTAGTTTCT
TATTTATATT CTCTGTACCC AAAGCGAAAG AAAAAAAAAG TGTTTACATC TTTGCAGAGT GTTCTGGCCA TTGTAGTATC
AATAACAATC AAGCCATTTT CCATTTGGTG GGTTTCCGTG AAACCAAGAG GTCCCTAAAT TAGTCCACAT AAATCTGGTT
AACATATTTG AAGTTAAAAG TAATTGAGTG TTTCTCCTAG AAGAAATCTT TCTTTGTAAT CTAGAAAATC TCTATTAAAT
ATACTATATA TTATAAATTA AAAATTCAAT TTGAGGGGTC 

>Vigan.01G502800.01
TAAAAACTGA AAAAAGAAAA ATAAAAATTA GACACAGAAA CTGCATAGTG GTAAGTAAGT GTGGGAAGAA GATATTTTTC
TAGTATATTG ATTGATTGAT TTTGTTTTGG GGGCGCAGAA GTTTGTTTGT GAACCTTTTG CATGAAAACG GCGTCGTAAT
CGTCCATTCG TATTGGGAGA GCATGAAAAC CCCGATTCCG GGTTTCTACC GAAACCCTGT AAAGTTCAGA ATGCCAACTG
CAGAGAACTT GGTTCCCATT CGATTGGATA TCGAAATCGA AGGACAAAGA TACAAAGACG CATTCACTTG GAACCCTTCT
GATCCCGACT CCGAGGTTGT GGTCTTTGCA AAAAGGACTG TTAAAGACTT GAAGCTCCCT CCCGCCTTTG TTACACAAAT
TGCTCAATCT ATTCAATCAC AGCTCTTGGA GTTTAGATCC TATGAAGGCC AGGATATGTA TGCTGGGGAG AAGATTGTTC
CGATCAAGCT CGATCTTCGT GTTAATCATA CGCTTGTGAA GGACCAGTTT TTATGGGACT TGAACAACTT TGAGAGTGAC
CCTGAAGAGT TTGCTAGAAT CTTCTGCAAG GACATGGGCA TTGAAGATCC TGAGGTTGGA CCAGCTATTG CCTTTGCTAT
CAGAGAGCAA CTTTACGAAA TTGCAATTCA AAGTGTGGTC TCAGCAAGAG AAAGCAGAAT GAGCAAGAAG GGTCGTCGAG
GGGCTGAATA TACTCCGATC AGTAAAGGAG GTGCCGTAGC AGTGGACTTG GTGAAGTTAT TTGGTCCGAA ATCTAGTGTA
GTACGGAAAA GAAAGGAGTG GGACGTATAT GAACCTATTG TGGACCTGCT TTCCAATGAG GAAGTTGATG CCCTTGAAGC
AAAGGAAGAG AGAAATTTCA GGTGAATTGG CTCCGTGGTC AGCCACACCA TATCAGAAGG TTAGAGTTTG AAGTTTTTGT
ATTATATGCA AGCTGGGTTT TTAGTACCAG GAATCATTGA TTATCATTTG ATTTCGTTGG ATGTAATCTT GTAGTTTCTT
ATTTATATTC TCTGTACCCA AAGCGAAAGA AAAAAAAAGT GTTTACATCT TTGCAGAGTG TTCTGGCCAT TGTAGTATCA
ATAACAATCA AGCCATTTTC CATTTGGTGG GTTTCCGTGA AACCAAGAGG TCCCTAAATT AGTCCACATA AATCTGGTTA
ACATATTTGA AGTTAAAAGT AATTGAGTGT TTCTCCTAGA AGAAATCTTT CTTTGTAATC TAGAAAATCT CTATTAAATA
TACTATATAT TATAAATTAA AAATTCAATT TGAGGGGTC

>Vigan.01G502800.01
ATGAAAACCC CGATTCCGGG TTTCTACCGA AACCCTGTAA AGTTCAGAAT GCCAACTGCA GAGAACTTGG TTCCCATTCG
ATTGGATATC GAAATCGAAG GACAAAGATA CAAAGACGCA TTCACTTGGA ACCCTTCTGA TCCCGACTCC GAGGTTGTGG
TCTTTGCAAA AAGGACTGTT AAAGACTTGA AGCTCCCTCC CGCCTTTGTT ACACAAATTG CTCAATCTAT TCAATCACAG
CTCTTGGAGT TTAGATCCTA TGAAGGCCAG GATATGTATG CTGGGGAGAA GATTGTTCCG ATCAAGCTCG ATCTTCGTGT
TAATCATACG CTTGTGAAGG ACCAGTTTTT ATGGGACTTG AACAACTTTG AGAGTGACCC TGAAGAGTTT GCTAGAATCT
TCTGCAAGGA CATGGGCATT GAAGATCCTG AGGTTGGACC AGCTATTGCC TTTGCTATCA GAGAGCAACT TTACGAAATT
GCAATTCAAA GTGTGGTCTC AGCAAGAGAA AGCAGAATGA GCAAGAAGGG TCGTCGAGGG GCTGAATATA CTCCGATCAG
TAAAGGAGGT GCCGTAGCAG TGGACTTGGT GAAGTTATTT GGTCCGAAAT CTAGTGTAGT ACGGAAAAGA AAGGAGTGGG
ACGTATATGA ACCTATTGTG GACCTGCTTT CCAATGAGGA AGTTGATGCC CTTGAAGCAA AGGAAGAGAG AAATTTCAGG
TGA

>Vigan.01G502800.01
MKTPIPGFYR NPVKFRMPTA ENLVPIRLDI EIEGQRYKDA FTWNPSDPDS EVVVFAKRTV KDLKLPPAFV TQIAQSIQSQ
LLEFRSYEGQ DMYAGEKIVP IKLDLRVNHT LVKDQFLWDL NNFESDPEEF ARIFCKDMGI EDPEVGPAIA FAIREQLYEI
AIQSVVSARE SRMSKKGRRG AEYTPISKGG AVAVDLVKLF GPKSSVVRKR KEWDVYEPIV DLLSNEEVDA LEAKEERNFR
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