GBrowse Details

Vigan.01G497700.01

Basic Information:
Name: Vigan.01G497700.01
Multiple alignment
Variant Information
Position: Chr01:62641688..62643672 (- strand)
Length: 1985
Functional Information:
Description: Similar to Peroxiredoxin Q, chloroplastic. [Q6QPJ6, Populus jackii]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: antioxidant activity (GO:0016209)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant (IPR000866)
Thioredoxin-like fold (IPR012336)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.11,0.00,64.19,274.74,0.12,39.90,1.06,34.90
Arabidopsis thaliana homolog: AT3G26060.2
Automatic updates:
Name: NM_001248612 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306216 (LOC100306216), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:62641688..62641947 (- strand)
Length: 260
Type: three_prime_UTR
Position: Chr01:62641948..62642166 (- strand)
Length: 219
Type: CDS
Position: Chr01:62642249..62642338 (- strand)
Length: 90
Type: CDS
Position: Chr01:62643059..62643196 (- strand)
Length: 138
Type: CDS
Position: Chr01:62643311..62643505 (- strand)
Length: 195
Type: CDS
Position: Chr01:62643506..62643672 (- strand)
Length: 167
Type: five_prime_UTR

>Vigan.01G497700.01 class=Sequence position=Chr01:62641688..62643672 (- strand)
CGGTGTTGGG GTCAGAATTC GTCCACGCCA CAAAGCTAAT CTTCTATCAT CACCAATAAC CATCCACCAG CCATTAACGC
TTTTCCTTAT CTTTCTCGTC TCTCTCTATC CTCACACCAA AACCAATCTT TCACTTGCCA TTTCCTTCTT CGCACTGTTC
CTCACCAATG GCTTCCCTCT CTCTCCCTAA TCACTATCTT CCCACTTTGC TTCGCTCTCA CTCTTCCAAC TACCCATCTT
CCCAAAACCT CCCACTCTCT TCCACGCCTT CAAATTCTCA ATTTTTCGGT CTCAAGTTCT CTCATTCTCC TTCTTCCTCA
ATCCCCTCTT CTTCTTCCCT CAGAACCTCC ATTTTCGCCA AGGTACATTT CACTCATCAT CACCTTTTTG CATGTTCCTA
ATAACTTAGC CTTTTAGTTC TTACTTAGAC CCACCAGCGT CTCTTCTCTT TTTTTGTGTT GTATATTCCT TTATAGGTGA
GTAAAGGTTC TAAGCCACCG AATTTCACAC TGAAAGATCA GAATGGAAAG AATGTGAGCC TCTCCGGCTT CAAGGGAAAG
CCAGTAGTTG TATATTTCTA CCCTGCTGAT GAGACCCCTG GCTGTACCAA ACAGGTAAAT TCACACAATG TCAATGTAGG
AATAGTTCAA AATGGAGATG CCAAGTTTTT AAAGTTGTGT GCTTCTTAAC CGTTTTCCAA GTTCACATAT TTCAACAGTG
AATAGTGAAT GTATGATGCA CTATATATGG AGCATTTGAA TGAACAAAAG GGAATAAACT GTTCAACATC TTTCAGACTT
CATTTGTTGA TATATAGGAA GGTCTTTTTG TTCTTTTGAA AAGGAAGGAC AGAGAAGGAT TCTGGTTGTT CTCATGAGTT
GAACTCCGGT ATTGTATATG CATGCTGCAA ATGGAGGGTA ATGAAAAATA GAGAGCACTT CAACCCCTGT TAGGTTTATC
CATACTATTC TTGATTTGGT TATCTTAGTT TTCGCATGTA AGATAGCGTA GAAAATAACT CCTTTGGGCA AATCAACCAG
ATTCGCTGCC TCTAACGGAT TTCTGATGAT TGAGTACTTT GTATCCCTAT TCATTGAGGT TCATCTACTG CTATAAGGTT
CTTGATGTAT GCTTTCTGAC GCTTAGTTAT TGGGTTTTAG TCACAACATA TTAATACAAA ACGTAAATAG TTGTAATACT
AGAAGTAACA AACAAAGAAA TAAAATTTAA AGTTGCATAC CAATTCTAAA AGGTCTCATA AAAATGACCA TGAACTTGTT
TTGTCAAATG TCTTATAATA CGGATTGGAG GGAGTAATTT ATTCTTTATT GCAGGCTTGT GCTTTCAGGG ATTCGTATGA
GAAGTTCAAG AAAGCAGGAG CAGTGGTTGT TGGGATAAGT GGCGATGATG CTTCCTCGCA CAAGGTAAAG ATCAAAGGTT
CCACTGTTTC ATTTTTATAA TCAACCATAT TAATATTTTT TCTGATTTGC GTTTCACGTA ATGTAGGCAT TTGCCAGCAA
ATACAAACTT CCATTTACAT TGTTGAGTGA TGAGGGCAAC AAGGTGAGAA AGGAATGGGG AGTGCCAGGT GATTTCTTTG
GATCATTGCC TGGAAGAGAG ACTTATGTGA TTGACAAAAA TGGGGTGGTT CAGCTTGTCT ACAACAATCA ATTCCAACCA
GAAAAGCATA TTGATGAGAC CCTGAAAATA CTTCAGAGCC TTTGAGGCTT TTTTTATTCT TTTGTTTTCT ATCCCCGCGG
GCCTGATTCA GAGTCTGGCA AATATTTAAC TGTGAATTTT AAGTTTGTAA GCTCTGTAAT TATGTAGCTG ATTTTGGAGC
CTTTGATCAC ATTTCTTGGA GGTGATGACA TGTAGAGAGA AAAAGATTAT AACCTCTCCG GTGGAAATAA TGCCTTCATT
TGCCAAAAAT ACAGTGAGAT TATATATGTA TCTTTTCCAC ATGGTATGTT TACTTTCAAT TGACA

>Vigan.01G497700.01
CGGTGTTGGG GTCAGAATTC GTCCACGCCA CAAAGCTAAT CTTCTATCAT CACCAATAAC CATCCACCAG CCATTAACGC
TTTTCCTTAT CTTTCTCGTC TCTCTCTATC CTCACACCAA AACCAATCTT TCACTTGCCA TTTCCTTCTT CGCACTGTTC
CTCACCAATG GCTTCCCTCT CTCTCCCTAA TCACTATCTT CCCACTTTGC TTCGCTCTCA CTCTTCCAAC TACCCATCTT
CCCAAAACCT CCCACTCTCT TCCACGCCTT CAAATTCTCA ATTTTTCGGT CTCAAGTTCT CTCATTCTCC TTCTTCCTCA
ATCCCCTCTT CTTCTTCCCT CAGAACCTCC ATTTTCGCCA AGGTGAGTAA AGGTTCTAAG CCACCGAATT TCACACTGAA
AGATCAGAAT GGAAAGAATG TGAGCCTCTC CGGCTTCAAG GGAAAGCCAG TAGTTGTATA TTTCTACCCT GCTGATGAGA
CCCCTGGCTG TACCAAACAG GCTTGTGCTT TCAGGGATTC GTATGAGAAG TTCAAGAAAG CAGGAGCAGT GGTTGTTGGG
ATAAGTGGCG ATGATGCTTC CTCGCACAAG GCATTTGCCA GCAAATACAA ACTTCCATTT ACATTGTTGA GTGATGAGGG
CAACAAGGTG AGAAAGGAAT GGGGAGTGCC AGGTGATTTC TTTGGATCAT TGCCTGGAAG AGAGACTTAT GTGATTGACA
AAAATGGGGT GGTTCAGCTT GTCTACAACA ATCAATTCCA ACCAGAAAAG CATATTGATG AGACCCTGAA AATACTTCAG
AGCCTTTGAG GCTTTTTTTA TTCTTTTGTT TTCTATCCCC GCGGGCCTGA TTCAGAGTCT GGCAAATATT TAACTGTGAA
TTTTAAGTTT GTAAGCTCTG TAATTATGTA GCTGATTTTG GAGCCTTTGA TCACATTTCT TGGAGGTGAT GACATGTAGA
GAGAAAAAGA TTATAACCTC TCCGGTGGAA ATAATGCCTT CATTTGCCAA AAATACAGTG AGATTATATA TGTATCTTTT
CCACATGGTA TGTTTACTTT CAATTGACA

>Vigan.01G497700.01
ATGGCTTCCC TCTCTCTCCC TAATCACTAT CTTCCCACTT TGCTTCGCTC TCACTCTTCC AACTACCCAT CTTCCCAAAA
CCTCCCACTC TCTTCCACGC CTTCAAATTC TCAATTTTTC GGTCTCAAGT TCTCTCATTC TCCTTCTTCC TCAATCCCCT
CTTCTTCTTC CCTCAGAACC TCCATTTTCG CCAAGGTGAG TAAAGGTTCT AAGCCACCGA ATTTCACACT GAAAGATCAG
AATGGAAAGA ATGTGAGCCT CTCCGGCTTC AAGGGAAAGC CAGTAGTTGT ATATTTCTAC CCTGCTGATG AGACCCCTGG
CTGTACCAAA CAGGCTTGTG CTTTCAGGGA TTCGTATGAG AAGTTCAAGA AAGCAGGAGC AGTGGTTGTT GGGATAAGTG
GCGATGATGC TTCCTCGCAC AAGGCATTTG CCAGCAAATA CAAACTTCCA TTTACATTGT TGAGTGATGA GGGCAACAAG
GTGAGAAAGG AATGGGGAGT GCCAGGTGAT TTCTTTGGAT CATTGCCTGG AAGAGAGACT TATGTGATTG ACAAAAATGG
GGTGGTTCAG CTTGTCTACA ACAATCAATT CCAACCAGAA AAGCATATTG ATGAGACCCT GAAAATACTT CAGAGCCTTT
GA

>Vigan.01G497700.01
MASLSLPNHY LPTLLRSHSS NYPSSQNLPL SSTPSNSQFF GLKFSHSPSS SIPSSSSLRT SIFAKVSKGS KPPNFTLKDQ
NGKNVSLSGF KGKPVVVYFY PADETPGCTK QACAFRDSYE KFKKAGAVVV GISGDDASSH KAFASKYKLP FTLLSDEGNK
VRKEWGVPGD FFGSLPGRET YVIDKNGVVQ LVYNNQFQPE KHIDETLKIL QSL*