GBrowse Details

Vigan.01G496000.01

Basic Information:
Name: Vigan.01G496000.01
Multiple alignment
Variant Information
Position: Chr01:62481517..62483475 (+ strand)
Length: 1959
Functional Information:
Description: Similar to RmlC-like jelly roll fold. [XP_007012603.1, Theobroma cacao]
InterPro: Protein of unknown function DUF985 (IPR009327)
RmlC-like cupin domain (IPR011051)
RmlC-like jelly roll fold (IPR014710)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:6.88,1.04,3.47,2.76,10.18,8.85,9.64,3.86
Arabidopsis thaliana homolog: AT1G19130.1
Automatic updates:
Name: NM_001248890 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306492 (LOC100306492), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:62481517..62482264 (+ strand)
Length: 748
Type: five_prime_UTR
Position: Chr01:62482265..62482513 (+ strand)
Length: 249
Type: CDS
Position: Chr01:62482594..62482920 (+ strand)
Length: 327
Type: CDS
Position: Chr01:62482921..62483475 (+ strand)
Length: 555
Type: three_prime_UTR

>Vigan.01G496000.01 class=Sequence position=Chr01:62481517..62483475 (+ strand)
AATGACAGTG AGGGCGTGTG CTTAGTACAG AGGGGTGCAA CTAAAAATCT TCTTTTCTCT TTCTTTCAAA CAAACCAAAC
TCTGTTTCAT TGGAAGCGTG AAACCTACCT TATTCTTTTG CTTATGGTAA GCTTCTTTCT TCTCCTTTCT TCCATTCCCG
CATCTTCTTC TAAATTTTCT TATGCATGAA ATCGTTTTCT GGGTCTTGCG GGTCTTTTAA AATTTTGGGT TTTGAATTTT
AAGTTTTAGA GTGTAAATTA TAGTTGGGTG ATGAAAAGCA CCATAAAAAT TTTTCACAAT AAAAGGAAAA TACTCAAATA
CTATTCACCA TTACACCATA CCACCATTGC CATTGTTGTC GCCGCTGACA CTGCCATTGT TGTTCCAGAA AGCTTGTTCT
GGAATTAATG ATTCGAAAGT CACTTTTACA AGAATGTGGT TATATTTAGA AATTGAATTA AATATGTTTT TATCTCTTAG
TTAAGTAAAA TTAAAATAAT TTTCTTTTGG AAACTTTCAA TCAATTTAGT CCAAGTAATT AGAATTTTCT AACAACAGAA
CTAAAATAAT GTGAGAATGA AGTAAACCTT TTGGAAGACA GATTGAGCGA TAACCCATTC CTCACCAACC ACGCACGCGA
TCGCAAAGTT TGAAAATTGA ATTCTGATGT TGAATTTTGT GCAGATAAGG TGTTTGAAAT ATAGAGAGAA TTGAGAAGGG
CGTTGATCGG ATCGGCAGAG AAAGGAGAAT GAGTTTGACG GCATCAGAGA TAACGAAGAA GCTGAATCTG CAGCCTCACC
CAGAAGGTGG CTTCTACATC GAAACATTTC GAGACCATTC CGTTCATCTT TCCACCTCTC AGCTCCCGCC GGAATACAAA
GTCGATCGCC CTGTCTCCAC CTCCATCTAC TTCCTCCTTC CCTCCGGAAC CTTTTCTCGC CTCCATCGCA TACCCTGCGC
CGAAACATGG CATCATTACA TCGGCGACCC TCTCACCGTA CGCATGCTTC TCTCTCTCTT TAACCTAATA TCAATTCAAT
TTTTCACTTT AATTAAATTC TTTTAACCCT TCTCCAGATT GTGGAATTGG ATGAGAAAGA TGGGAGTGTG AAGTTCACTT
GCCTTGGATC GGATCTCGGT GAGAATCAGA TGCCGCAGTA CACGGTCCCT CCCAACGTCT GGTTTGGCTC CTTTCCCACC
AACGATTACT CCTTCTCCAC CGATGGTGTC TTCAAAACTG CTGCTGCACC TCCCAGAGAC GGTGAGAGGA ACTACTCTCT
TGTAGGATGC ACCTGTGCAC CTGCGTTTCA GTACCAGGAC TTCGAGCTCG CTAAACCTTC TTACCTCCTC GCTCGCTTCC
CCCATTTCGA GCCTCTCATC ACCACTCTCA CGTTCCCTGA GTGACTCCCT CACCGCGCCA TTCTCACTTT CTTTCATACC
GTCTCTGGTA ATATGTATTT TATACTGCTT TTCAGAATCC AATAATTATG AATATATATA TATATATGAA TGTATATATT
CTCACTTTCA TGGGAATAAT TTGGAAATGG TAACTTATGT TCGTCCTTTC TGAATCTTTC TTCTGCTAAC AGTTTTTCTC
AATTTCCTTT TGATTTTAGG CTGTAGTAGT ATATGCATGC AAGAGAATTT AGTGTTCTGA TCATCAACTA TTCTGGTTTT
TCAATCCCTC TTGTTTCCAG ATTGTGCAAC TATTGCTTAC TCTTCCATTC TCTTTCAAAT GAGATTATAC TAGTGCATAT
AGAAGTTCCT TCATGTTTTC AAACTCTAGG AAAATATGAG TTGTTGGTGC GTTTATCTCA TCGAGCAAGA AATTGGTTTA
TGCCTCTTTT GTCATTCTTT TTCTAGCAAG GTTATAGATA TTTTCCCGAT TCGTCCTCCA ACCTTTTTCG TACATTCCAT
GTTGAACTTC TATGCTATTT GAGATATTAA CCTCCTCCA

>Vigan.01G496000.01
AATGACAGTG AGGGCGTGTG CTTAGTACAG AGGGGTGCAA CTAAAAATCT TCTTTTCTCT TTCTTTCAAA CAAACCAAAC
TCTGTTTCAT TGGAAGCGTG AAACCTACCT TATTCTTTTG CTTATGGTAA GCTTCTTTCT TCTCCTTTCT TCCATTCCCG
CATCTTCTTC TAAATTTTCT TATGCATGAA ATCGTTTTCT GGGTCTTGCG GGTCTTTTAA AATTTTGGGT TTTGAATTTT
AAGTTTTAGA GTGTAAATTA TAGTTGGGTG ATGAAAAGCA CCATAAAAAT TTTTCACAAT AAAAGGAAAA TACTCAAATA
CTATTCACCA TTACACCATA CCACCATTGC CATTGTTGTC GCCGCTGACA CTGCCATTGT TGTTCCAGAA AGCTTGTTCT
GGAATTAATG ATTCGAAAGT CACTTTTACA AGAATGTGGT TATATTTAGA AATTGAATTA AATATGTTTT TATCTCTTAG
TTAAGTAAAA TTAAAATAAT TTTCTTTTGG AAACTTTCAA TCAATTTAGT CCAAGTAATT AGAATTTTCT AACAACAGAA
CTAAAATAAT GTGAGAATGA AGTAAACCTT TTGGAAGACA GATTGAGCGA TAACCCATTC CTCACCAACC ACGCACGCGA
TCGCAAAGTT TGAAAATTGA ATTCTGATGT TGAATTTTGT GCAGATAAGG TGTTTGAAAT ATAGAGAGAA TTGAGAAGGG
CGTTGATCGG ATCGGCAGAG AAAGGAGAAT GAGTTTGACG GCATCAGAGA TAACGAAGAA GCTGAATCTG CAGCCTCACC
CAGAAGGTGG CTTCTACATC GAAACATTTC GAGACCATTC CGTTCATCTT TCCACCTCTC AGCTCCCGCC GGAATACAAA
GTCGATCGCC CTGTCTCCAC CTCCATCTAC TTCCTCCTTC CCTCCGGAAC CTTTTCTCGC CTCCATCGCA TACCCTGCGC
CGAAACATGG CATCATTACA TCGGCGACCC TCTCACCATT GTGGAATTGG ATGAGAAAGA TGGGAGTGTG AAGTTCACTT
GCCTTGGATC GGATCTCGGT GAGAATCAGA TGCCGCAGTA CACGGTCCCT CCCAACGTCT GGTTTGGCTC CTTTCCCACC
AACGATTACT CCTTCTCCAC CGATGGTGTC TTCAAAACTG CTGCTGCACC TCCCAGAGAC GGTGAGAGGA ACTACTCTCT
TGTAGGATGC ACCTGTGCAC CTGCGTTTCA GTACCAGGAC TTCGAGCTCG CTAAACCTTC TTACCTCCTC GCTCGCTTCC
CCCATTTCGA GCCTCTCATC ACCACTCTCA CGTTCCCTGA GTGACTCCCT CACCGCGCCA TTCTCACTTT CTTTCATACC
GTCTCTGGTA ATATGTATTT TATACTGCTT TTCAGAATCC AATAATTATG AATATATATA TATATATGAA TGTATATATT
CTCACTTTCA TGGGAATAAT TTGGAAATGG TAACTTATGT TCGTCCTTTC TGAATCTTTC TTCTGCTAAC AGTTTTTCTC
AATTTCCTTT TGATTTTAGG CTGTAGTAGT ATATGCATGC AAGAGAATTT AGTGTTCTGA TCATCAACTA TTCTGGTTTT
TCAATCCCTC TTGTTTCCAG ATTGTGCAAC TATTGCTTAC TCTTCCATTC TCTTTCAAAT GAGATTATAC TAGTGCATAT
AGAAGTTCCT TCATGTTTTC AAACTCTAGG AAAATATGAG TTGTTGGTGC GTTTATCTCA TCGAGCAAGA AATTGGTTTA
TGCCTCTTTT GTCATTCTTT TTCTAGCAAG GTTATAGATA TTTTCCCGAT TCGTCCTCCA ACCTTTTTCG TACATTCCAT
GTTGAACTTC TATGCTATTT GAGATATTAA CCTCCTCCA

>Vigan.01G496000.01
ATGAGTTTGA CGGCATCAGA GATAACGAAG AAGCTGAATC TGCAGCCTCA CCCAGAAGGT GGCTTCTACA TCGAAACATT
TCGAGACCAT TCCGTTCATC TTTCCACCTC TCAGCTCCCG CCGGAATACA AAGTCGATCG CCCTGTCTCC ACCTCCATCT
ACTTCCTCCT TCCCTCCGGA ACCTTTTCTC GCCTCCATCG CATACCCTGC GCCGAAACAT GGCATCATTA CATCGGCGAC
CCTCTCACCA TTGTGGAATT GGATGAGAAA GATGGGAGTG TGAAGTTCAC TTGCCTTGGA TCGGATCTCG GTGAGAATCA
GATGCCGCAG TACACGGTCC CTCCCAACGT CTGGTTTGGC TCCTTTCCCA CCAACGATTA CTCCTTCTCC ACCGATGGTG
TCTTCAAAAC TGCTGCTGCA CCTCCCAGAG ACGGTGAGAG GAACTACTCT CTTGTAGGAT GCACCTGTGC ACCTGCGTTT
CAGTACCAGG ACTTCGAGCT CGCTAAACCT TCTTACCTCC TCGCTCGCTT CCCCCATTTC GAGCCTCTCA TCACCACTCT
CACGTTCCCT GAGTGA

>Vigan.01G496000.01
MSLTASEITK KLNLQPHPEG GFYIETFRDH SVHLSTSQLP PEYKVDRPVS TSIYFLLPSG TFSRLHRIPC AETWHHYIGD
PLTIVELDEK DGSVKFTCLG SDLGENQMPQ YTVPPNVWFG SFPTNDYSFS TDGVFKTAAA PPRDGERNYS LVGCTCAPAF
QYQDFELAKP SYLLARFPHF EPLITTLTFP E*