GBrowse Details

Vigan.01G495100.01

Basic Information:
Name: Vigan.01G495100.01
Multiple alignment
Variant Information
Position: Chr01:62439602..62441043 (+ strand)
Length: 1442
Functional Information:
Description: Similar to Uncharacterized protein. [I1L1Q7, Glycine max]
InterPro: LURP1-like domain (IPR007612)
Tubby C-terminal-like domain (IPR025659)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.04,0.00,20.95,3.81,0.00,58.87,0.12,2.04
Automatic updates:
Name: NM_001249069 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306504 (LOC100306504), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:62439602..62440019 (+ strand)
Length: 418
Type: five_prime_UTR
Position: Chr01:62440020..62440256 (+ strand)
Length: 237
Type: CDS
Position: Chr01:62440339..62440569 (+ strand)
Length: 231
Type: CDS
Position: Chr01:62440661..62440804 (+ strand)
Length: 144
Type: CDS
Position: Chr01:62440805..62441043 (+ strand)
Length: 239
Type: three_prime_UTR

>Vigan.01G495100.01 class=Sequence position=Chr01:62439602..62441043 (+ strand)
TTACATTGTA TTCGGACGGG TGAAGGAAGA TGAAGAAGTG AAGAGAGAAA CAGAAGAAGA GAAAATGAAA TGAAGTAGCA
CACGACATCA TCATACACAG ACAGAGATAT TGAGCTGGGC TTACTGAAAG TGAAGGGAAT TGGCCACTCT GTTAGATTCT
GCTATCACTA TTATGCACCC ATTAAAGGCA TTCACTTTTT TAAATTTGAG ACGTGCAAGA TTGCATTAAA ACACTCATAT
TCCCCAAGGT GTTTCTACAT CATAATCATC ATCGAGAATG GTGGCATAAA TAAAGCCACA CACTTCCATC TAACTCCACA
AGCTATCTCA ATCCATGACT GGTAGAGATT CTTCCATCTG AAAGCTAAGA CAAAGAAGGA ACTTGATCGT TTCGGTTTTT
GTTTTTTGAA ACGATCAAAT GACTACGAAC GCAAGCACGA TGCCGATCGT TGGCAAACTG TACTGTTCAT CGTCTCAGAC
GGTGCATGTG GTGAGGAAGA GGCCACACGT GGTGAATGGT GGTGGTTTTG TGGTGATGGA TTCTAGTGCC CAGAGGGTTA
TGTTCAGGGT CGATGGTTGT GGTGTTCGTG GCAAAAAGGG AGACTTGATC CTAAGAGAAG GAGATGGAGA CGCTTTGCTT
CTAATGCTTC GGAAGGTATA TTTATACTTT TACTTTCTTT CTTTTTTCTT GCGTCAAGAG TCGTGTTTGA AGAGGTTAAT
TTTGATGGAA TGTGCAGGGA GGCATAGTGG AGGCCTTGAG CATTTACAAG AAGTGGAAAG GTTACAGTTT AGACTACGAA
GGATCACGGA AGCTGGTTTT CAGCTTGAGA GAACCGAATT CTTGTTTGTT TAAGAACAAG GCAATCAGAA TCTCCACTAG
GAACAGAGGC TGTGATTTTA AGATCAGTGG CTATTTCCCG GACAAGTGTT GTAGCATTGT TGACTCGAAA GGCAACGAGG
TAGCACAGGT ATTGGTTTCT TCAGTTGAGA ATACGCATAA TACAGTATCA GATAAAAGTA GCATTGATTA AATGTGCTGA
TTCATGATCT GTTTATTAGG TGAGGGTGAT GAAGGAAGTG GAGGAGTTGA TCCAAAACAA GGATTTGTAT CATGTGGTGG
TGAAAGCTGG GATGGATCAA GCTTTTGTTT TTGGAGTCAT AGCTATTCTT GATCACATTT ATGGAGAATC TACCCACTGC
TAAATTCAGA ACTCATCAGA TATGCTCCGA GTTCTGTGAT TTTTGTTTTT GTATGTCGAA TCGTGTAACC AAGTTGTGGT
TGAAGAATTT GTCTTGTATA ATGTGGAAAA ATGTGGCTAT TAAGGCGGTT TTCCTTGTAT TAATTAGAGG AGGTTGTCTT
GTTAAATAAA AGAAACATCC TTCTTTAATT CTTTTTCTCG TTTCGGTCTT TGTAGAAAGG GAACAGGGTA TTGAAAAGGT
AA

>Vigan.01G495100.01
TTACATTGTA TTCGGACGGG TGAAGGAAGA TGAAGAAGTG AAGAGAGAAA CAGAAGAAGA GAAAATGAAA TGAAGTAGCA
CACGACATCA TCATACACAG ACAGAGATAT TGAGCTGGGC TTACTGAAAG TGAAGGGAAT TGGCCACTCT GTTAGATTCT
GCTATCACTA TTATGCACCC ATTAAAGGCA TTCACTTTTT TAAATTTGAG ACGTGCAAGA TTGCATTAAA ACACTCATAT
TCCCCAAGGT GTTTCTACAT CATAATCATC ATCGAGAATG GTGGCATAAA TAAAGCCACA CACTTCCATC TAACTCCACA
AGCTATCTCA ATCCATGACT GGTAGAGATT CTTCCATCTG AAAGCTAAGA CAAAGAAGGA ACTTGATCGT TTCGGTTTTT
GTTTTTTGAA ACGATCAAAT GACTACGAAC GCAAGCACGA TGCCGATCGT TGGCAAACTG TACTGTTCAT CGTCTCAGAC
GGTGCATGTG GTGAGGAAGA GGCCACACGT GGTGAATGGT GGTGGTTTTG TGGTGATGGA TTCTAGTGCC CAGAGGGTTA
TGTTCAGGGT CGATGGTTGT GGTGTTCGTG GCAAAAAGGG AGACTTGATC CTAAGAGAAG GAGATGGAGA CGCTTTGCTT
CTAATGCTTC GGAAGGGAGG CATAGTGGAG GCCTTGAGCA TTTACAAGAA GTGGAAAGGT TACAGTTTAG ACTACGAAGG
ATCACGGAAG CTGGTTTTCA GCTTGAGAGA ACCGAATTCT TGTTTGTTTA AGAACAAGGC AATCAGAATC TCCACTAGGA
ACAGAGGCTG TGATTTTAAG ATCAGTGGCT ATTTCCCGGA CAAGTGTTGT AGCATTGTTG ACTCGAAAGG CAACGAGGTA
GCACAGGTGA GGGTGATGAA GGAAGTGGAG GAGTTGATCC AAAACAAGGA TTTGTATCAT GTGGTGGTGA AAGCTGGGAT
GGATCAAGCT TTTGTTTTTG GAGTCATAGC TATTCTTGAT CACATTTATG GAGAATCTAC CCACTGCTAA ATTCAGAACT
CATCAGATAT GCTCCGAGTT CTGTGATTTT TGTTTTTGTA TGTCGAATCG TGTAACCAAG TTGTGGTTGA AGAATTTGTC
TTGTATAATG TGGAAAAATG TGGCTATTAA GGCGGTTTTC CTTGTATTAA TTAGAGGAGG TTGTCTTGTT AAATAAAAGA
AACATCCTTC TTTAATTCTT TTTCTCGTTT CGGTCTTTGT AGAAAGGGAA CAGGGTATTG AAAAGGTAA

>Vigan.01G495100.01
ATGACTACGA ACGCAAGCAC GATGCCGATC GTTGGCAAAC TGTACTGTTC ATCGTCTCAG ACGGTGCATG TGGTGAGGAA
GAGGCCACAC GTGGTGAATG GTGGTGGTTT TGTGGTGATG GATTCTAGTG CCCAGAGGGT TATGTTCAGG GTCGATGGTT
GTGGTGTTCG TGGCAAAAAG GGAGACTTGA TCCTAAGAGA AGGAGATGGA GACGCTTTGC TTCTAATGCT TCGGAAGGGA
GGCATAGTGG AGGCCTTGAG CATTTACAAG AAGTGGAAAG GTTACAGTTT AGACTACGAA GGATCACGGA AGCTGGTTTT
CAGCTTGAGA GAACCGAATT CTTGTTTGTT TAAGAACAAG GCAATCAGAA TCTCCACTAG GAACAGAGGC TGTGATTTTA
AGATCAGTGG CTATTTCCCG GACAAGTGTT GTAGCATTGT TGACTCGAAA GGCAACGAGG TAGCACAGGT GAGGGTGATG
AAGGAAGTGG AGGAGTTGAT CCAAAACAAG GATTTGTATC ATGTGGTGGT GAAAGCTGGG ATGGATCAAG CTTTTGTTTT
TGGAGTCATA GCTATTCTTG ATCACATTTA TGGAGAATCT ACCCACTGCT AA

>Vigan.01G495100.01
MTTNASTMPI VGKLYCSSSQ TVHVVRKRPH VVNGGGFVVM DSSAQRVMFR VDGCGVRGKK GDLILREGDG DALLLMLRKG
GIVEALSIYK KWKGYSLDYE GSRKLVFSLR EPNSCLFKNK AIRISTRNRG CDFKISGYFP DKCCSIVDSK GNEVAQVRVM
KEVEELIQNK DLYHVVVKAG MDQAFVFGVI AILDHIYGES THC*