GBrowse Details

Vigan.01G485100.01

Basic Information:
Name: Vigan.01G485100.01
Multiple alignment
Variant Information
Position: Chr01:61492284..61494734 (+ strand)
Length: 2451
Functional Information:
Description: Similar to Uncharacterized protein. [I1LVK7, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro: DNA-binding WRKY (IPR003657)
Zn-cluster domain (IPR018872)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.98,13.48,16.50,27.69,73.90,29.15,42.42,33.84
Automatic updates:
Name: DQ322694 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max WRKY13 mRNA, complete cds.
PubMed ID: 18384508 NCBI(pubmed)
Status: Known Variant
Name: DQ322696 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max WRKY33 mRNA, complete cds.
PubMed ID: 18384508 NCBI(pubmed)
Status: Known Variant
Name: NM_001250447 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max WRKY transcription factor 13 (GMWRKY13), mRNA.
PubMed ID: 18384508 NCBI(pubmed)
Status: Known Variant
Name: NM_001250479 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max WRKY transcription factor 33 (WRKY33), mRNA.
PubMed ID: 18384508 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:61492284..61492859 (+ strand)
Length: 576
Type: five_prime_UTR
Position: Chr01:61492860..61493545 (+ strand)
Length: 686
Type: CDS
Position: Chr01:61493621..61493746 (+ strand)
Length: 126
Type: CDS
Position: Chr01:61493898..61494075 (+ strand)
Length: 178
Type: CDS
Position: Chr01:61494076..61494734 (+ strand)
Length: 659
Type: three_prime_UTR

>Vigan.01G485100.01 class=Sequence position=Chr01:61492284..61494734 (+ strand)
TTGAGGAAAG TAGGAAAGTA GTAAGTAAAA ACAGTAGATG CAATGGCGTT GACCAGGTTG GTTGGTTGCT TGGGTTGGGG
AAATACTTGA AGACATTAAT CTGTTTGTAT AAAGGAAGTT GGTGCCTTGA CGGTGATGAT TTTTTTTTCT GCATTTTAAT
TTAAAATTTG TATGGTGAAG ATTGGTTGAA TGGTTTGGGA ATTTCCATGG GGGCTTCCAA AGCAAGAAGT GGTGGGACAC
AGCACCCAGT CCTCCTTTGG AGCTTTACAG TGAGTAAACA TTGTGTTTTG TCGCGGCACG CCTTTTTGTG TTATTATTAA
CAATAGTAAT AAATAATGGC ATCGGTGGAA TAAAAAAGTG ATTTCTAAAC AACATTATTC TGGCCATTAC TTCAATTTGC
ATGCAAAAGC AAAGTCCAAC CAATATCCAC GCTTCCATTG ACGAAGCTTC GTTGACTTTC TCATCCGCCC TCTCTTTTAT
AACCAACCCC CTTCCCCTCT TCTTTCTTCC ATCCAAACCA AACCCACACA AAAAACCAAA CCAACGCCAA CGTAGTCTCT
CTCTCTCCAA CCCTCCATGG CAGTAGATCT GGCAGGTGTT GCCAAGATTA GGATGGAAGA ACAGATAGCC ATCCAAGAAG
CAGCTTCCGC TGGATTGAAA AGTATGGAGC ATCTCATTCG TGTTCTTTCC TCCCAAATCC CTTCCTCTTC TGCTTCTGCC
TCTGCCTCTG CCTCCTCCTC TTCTTCCACA CACCACCACC GTCTTAATCT CAACCACCTT GACTGCACCG AAATCACCGA
CTTCACTGTC TCCAAGTTCA AACAAGTCAT CAACTTGTTG AATCGCACTG GTCACGCTCG CTTTCGCCGC GCACCTTCTC
ATTCCTCCCC CTCCCCCTCT CTTCCTTCTC CGCCGCAGCC ACACGCTCAA AAACTCACTC TTCATTTTGC AAACCCCAAG
GTCAAGTCAA ATCCCAATCC CAACCCCAAC CCCAACCCTT CTTTCACGGA TTTGTCGGTT TCTCAATATT CCAAGACCAA
AGACACCACC TTTAGCATAT CTCCTCCCAT CTCCACCACC ACCTCCTCCT TCATGTCCTC TGTCACGGCA GACGGCAGCG
TTTCCGACGG CAAGATCGGC CCCGCCATCC TCGCGTCCGG GAAGCCTCCT CTCTCCTCAT CCCACCGTAA AAGGTGTCAC
GACGCCACCC TCTCGGCCGG GAAAACCTCA TCCTCCGCCC ACTGTCATTG CTCCAAGAGA AGGTAAAATT CATTTCACAT
CCGCTTCAAT CAATTTCAAA CTAAAGGAAA AAATTAATTT TTTTCGCCTT TCAACAGGAA ATCTCGTATG AAACGAATGA
TTCGAGTGCC GGCGATAAGT TCGAAGATCG CCGATATCCC TGCGGATGAG TACTCGTGGA GAAAGTATGG TCAAAAACCC
ATCAAGGGGT CACCCTACCC ACGGTATTTT TCTATTCTTA TCCTTATGTA GAATTGAATC CGTCAAAGTC AAACATTAGT
TTCCACGCCT TTGAACTTTG GAACCCTCGA ATGATAGTAT TATTTTATTT CTAAGTTTGT CGGAGATTAA TTAATTTGTT
TTTGGTAATG GCAGAGGGTA CTACAAGTGC AGTAGCGTGC GAGGGTGTCC GGCCAGAAAG CACGTGGAGC GAGCCCAGGA
TGACCCTAAC ATGCTCATCG TTACCTACGA GGGAGAGCAC CGTCATCCGC AGCCGCGTCT GCCGGAAGCT GGCGTGCCCG
GCCCCGTGGC TTTCGGTGCT CAGGCTGTTT AAGCGACGGG TAGATCGTGA AAGTGTGAGA CCGACAGTGA TGAGTGATAA
GCGCTGTTTG CAATTAACTG AGGAAGTTGT AACGGTGTGT TGTAACAGTG AGAGAAAAAG AAAGGAAGTT CTTGCAAGCA
AGGGAAAGTA AAGAAAAGAA GCAAAGTCAA CTTTTGCTTT GTTGGTTGTG ACCTTTGTGG ACCAGAAGAG TCCTCTAGCA
GAGGATAAGC ACTTTTGTGT AAATTTGACA AAAAATTATG AAATATACTT GTTTTTTTTA ATCTTTTGAA TTTAATTAAT
CGACATAGTT TATGCGCTCT GGACCAATGA AGAAATTAAT CTTAATATTC ATAAAAATGG AATTTTTTTG ATTGTATTTA
GAAAATAGTA TTATTATATT GTTGGGTAGG TGCGTGATGT AATGTAATGA AACCCAAGTT GAAAGAAAAG TATAGATTCG
ATTGGGTTGA AAAGGAGGAC GGGGATGAAA GAAAAAGTCA AAGGTGAAGT GAGAAATGGA GAATCTGTGT AACTCATTCG
TGGAGTATGG TGCCACTGGG TCCCACACCA CCAGATTCCA ATCTAAGTCT TCTGCTTTCC TTCATTTCAA GATATTTCAT
TCAAATATAA CAAAACAAAA TATCAGGGAT AAATATGTTT TTCTTCGAAT A

>Vigan.01G485100.01
TTGAGGAAAG TAGGAAAGTA GTAAGTAAAA ACAGTAGATG CAATGGCGTT GACCAGGTTG GTTGGTTGCT TGGGTTGGGG
AAATACTTGA AGACATTAAT CTGTTTGTAT AAAGGAAGTT GGTGCCTTGA CGGTGATGAT TTTTTTTTCT GCATTTTAAT
TTAAAATTTG TATGGTGAAG ATTGGTTGAA TGGTTTGGGA ATTTCCATGG GGGCTTCCAA AGCAAGAAGT GGTGGGACAC
AGCACCCAGT CCTCCTTTGG AGCTTTACAG TGAGTAAACA TTGTGTTTTG TCGCGGCACG CCTTTTTGTG TTATTATTAA
CAATAGTAAT AAATAATGGC ATCGGTGGAA TAAAAAAGTG ATTTCTAAAC AACATTATTC TGGCCATTAC TTCAATTTGC
ATGCAAAAGC AAAGTCCAAC CAATATCCAC GCTTCCATTG ACGAAGCTTC GTTGACTTTC TCATCCGCCC TCTCTTTTAT
AACCAACCCC CTTCCCCTCT TCTTTCTTCC ATCCAAACCA AACCCACACA AAAAACCAAA CCAACGCCAA CGTAGTCTCT
CTCTCTCCAA CCCTCCATGG CAGTAGATCT GGCAGGTGTT GCCAAGATTA GGATGGAAGA ACAGATAGCC ATCCAAGAAG
CAGCTTCCGC TGGATTGAAA AGTATGGAGC ATCTCATTCG TGTTCTTTCC TCCCAAATCC CTTCCTCTTC TGCTTCTGCC
TCTGCCTCTG CCTCCTCCTC TTCTTCCACA CACCACCACC GTCTTAATCT CAACCACCTT GACTGCACCG AAATCACCGA
CTTCACTGTC TCCAAGTTCA AACAAGTCAT CAACTTGTTG AATCGCACTG GTCACGCTCG CTTTCGCCGC GCACCTTCTC
ATTCCTCCCC CTCCCCCTCT CTTCCTTCTC CGCCGCAGCC ACACGCTCAA AAACTCACTC TTCATTTTGC AAACCCCAAG
GTCAAGTCAA ATCCCAATCC CAACCCCAAC CCCAACCCTT CTTTCACGGA TTTGTCGGTT TCTCAATATT CCAAGACCAA
AGACACCACC TTTAGCATAT CTCCTCCCAT CTCCACCACC ACCTCCTCCT TCATGTCCTC TGTCACGGCA GACGGCAGCG
TTTCCGACGG CAAGATCGGC CCCGCCATCC TCGCGTCCGG GAAGCCTCCT CTCTCCTCAT CCCACCGTAA AAGGTGTCAC
GACGCCACCC TCTCGGCCGG GAAAACCTCA TCCTCCGCCC ACTGTCATTG CTCCAAGAGA AGGAAATCTC GTATGAAACG
AATGATTCGA GTGCCGGCGA TAAGTTCGAA GATCGCCGAT ATCCCTGCGG ATGAGTACTC GTGGAGAAAG TATGGTCAAA
AACCCATCAA GGGGTCACCC TACCCACGAG GGTACTACAA GTGCAGTAGC GTGCGAGGGT GTCCGGCCAG AAAGCACGTG
GAGCGAGCCC AGGATGACCC TAACATGCTC ATCGTTACCT ACGAGGGAGA GCACCGTCAT CCGCAGCCGC GTCTGCCGGA
AGCTGGCGTG CCCGGCCCCG TGGCTTTCGG TGCTCAGGCT GTTTAAGCGA CGGGTAGATC GTGAAAGTGT GAGACCGACA
GTGATGAGTG ATAAGCGCTG TTTGCAATTA ACTGAGGAAG TTGTAACGGT GTGTTGTAAC AGTGAGAGAA AAAGAAAGGA
AGTTCTTGCA AGCAAGGGAA AGTAAAGAAA AGAAGCAAAG TCAACTTTTG CTTTGTTGGT TGTGACCTTT GTGGACCAGA
AGAGTCCTCT AGCAGAGGAT AAGCACTTTT GTGTAAATTT GACAAAAAAT TATGAAATAT ACTTGTTTTT TTTAATCTTT
TGAATTTAAT TAATCGACAT AGTTTATGCG CTCTGGACCA ATGAAGAAAT TAATCTTAAT ATTCATAAAA ATGGAATTTT
TTTGATTGTA TTTAGAAAAT AGTATTATTA TATTGTTGGG TAGGTGCGTG ATGTAATGTA ATGAAACCCA AGTTGAAAGA
AAAGTATAGA TTCGATTGGG TTGAAAAGGA GGACGGGGAT GAAAGAAAAA GTCAAAGGTG AAGTGAGAAA TGGAGAATCT
GTGTAACTCA TTCGTGGAGT ATGGTGCCAC TGGGTCCCAC ACCACCAGAT TCCAATCTAA GTCTTCTGCT TTCCTTCATT
TCAAGATATT TCATTCAAAT ATAACAAAAC AAAATATCAG GGATAAATAT GTTTTTCTTC GAATA

>Vigan.01G485100.01
ATGGCAGTAG ATCTGGCAGG TGTTGCCAAG ATTAGGATGG AAGAACAGAT AGCCATCCAA GAAGCAGCTT CCGCTGGATT
GAAAAGTATG GAGCATCTCA TTCGTGTTCT TTCCTCCCAA ATCCCTTCCT CTTCTGCTTC TGCCTCTGCC TCTGCCTCCT
CCTCTTCTTC CACACACCAC CACCGTCTTA ATCTCAACCA CCTTGACTGC ACCGAAATCA CCGACTTCAC TGTCTCCAAG
TTCAAACAAG TCATCAACTT GTTGAATCGC ACTGGTCACG CTCGCTTTCG CCGCGCACCT TCTCATTCCT CCCCCTCCCC
CTCTCTTCCT TCTCCGCCGC AGCCACACGC TCAAAAACTC ACTCTTCATT TTGCAAACCC CAAGGTCAAG TCAAATCCCA
ATCCCAACCC CAACCCCAAC CCTTCTTTCA CGGATTTGTC GGTTTCTCAA TATTCCAAGA CCAAAGACAC CACCTTTAGC
ATATCTCCTC CCATCTCCAC CACCACCTCC TCCTTCATGT CCTCTGTCAC GGCAGACGGC AGCGTTTCCG ACGGCAAGAT
CGGCCCCGCC ATCCTCGCGT CCGGGAAGCC TCCTCTCTCC TCATCCCACC GTAAAAGGTG TCACGACGCC ACCCTCTCGG
CCGGGAAAAC CTCATCCTCC GCCCACTGTC ATTGCTCCAA GAGAAGGAAA TCTCGTATGA AACGAATGAT TCGAGTGCCG
GCGATAAGTT CGAAGATCGC CGATATCCCT GCGGATGAGT ACTCGTGGAG AAAGTATGGT CAAAAACCCA TCAAGGGGTC
ACCCTACCCA CGAGGGTACT ACAAGTGCAG TAGCGTGCGA GGGTGTCCGG CCAGAAAGCA CGTGGAGCGA GCCCAGGATG
ACCCTAACAT GCTCATCGTT ACCTACGAGG GAGAGCACCG TCATCCGCAG CCGCGTCTGC CGGAAGCTGG CGTGCCCGGC
CCCGTGGCTT TCGGTGCTCA GGCTGTTTAA 

>Vigan.01G485100.01
MAVDLAGVAK IRMEEQIAIQ EAASAGLKSM EHLIRVLSSQ IPSSSASASA SASSSSSTHH HRLNLNHLDC TEITDFTVSK
FKQVINLLNR TGHARFRRAP SHSSPSPSLP SPPQPHAQKL TLHFANPKVK SNPNPNPNPN PSFTDLSVSQ YSKTKDTTFS
ISPPISTTTS SFMSSVTADG SVSDGKIGPA ILASGKPPLS SSHRKRCHDA TLSAGKTSSS AHCHCSKRRK SRMKRMIRVP
AISSKIADIP ADEYSWRKYG QKPIKGSPYP RGYYKCSSVR GCPARKHVER AQDDPNMLIV TYEGEHRHPQ PRLPEAGVPG
PVAFGAQAV*