GBrowse Details

Vigan.01G479600.01

Basic Information:
Name: Vigan.01G479600.01
Multiple alignment
Variant Information
Position: Chr01:60855308..60856523 (+ strand)
Length: 1216
Functional Information:
Description: Similar to Ribulose bisphosphate carboxylase small chain. [I1LVQ6, Glycine max]
InterPro: Ribulose bisphosphate carboxylase small chain, domain (IPR000894)
Ribulose bisphosphate carboxylase, small chain (IPR024681)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.05,0.15,0.69,1.20,16.87,0.31,43.44,5.99
Automatic updates:
Name: NM_001248939 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative ribulose bisphosphate carboxylase small chain (LOC100527679), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:60855308..60855542 (+ strand)
Length: 235
Type: five_prime_UTR
Position: Chr01:60855543..60855689 (+ strand)
Length: 147
Type: CDS
Position: Chr01:60855763..60855894 (+ strand)
Length: 132
Type: CDS
Position: Chr01:60855982..60856212 (+ strand)
Length: 231
Type: CDS
Position: Chr01:60856213..60856523 (+ strand)
Length: 311
Type: three_prime_UTR

>Vigan.01G479600.01 class=Sequence position=Chr01:60855308..60856523 (+ strand)
GTTTTCCAGC ACCAGAAATT GGAGGGCCCC AGCCTCCACT CATCAAGTTT CAATAGAATG AAGTGTCGAT GAAACCAAAT
CCTACTTTGC ACCGTCTGCA TATACTACTT TGCACATTAT TTCAGGATCT CCAAATCCTA TTTTCTTCCT CCTTTTGTCT
GACCACAAGC CTCATTCAAG ATCAAACACT GCATAACCTT TGTTTTCCAT TCAAAACTTC ATTCACTTGA GTAAAATGTC
TGCTGAAACT TTTTCAGCTC AGGTTGCTGG GGCTGCCTTT GTTGGCTTGA AGTCCAACTC ATCAAGTCTT TGCCAAAGTA
CAGCATCTAT AACATGGAAA AGGAAGATTG CTTCCAACTC TTCTAAGACT TACTGCATGA AGGTGAAGTG ATCAAATCAC
TTATATATAT ATATATATGA TGTGTTTGTG TATATTGTGT TTAAACTTGT GACAGACATG GAATCCCATC AACAACAAGA
AGTTCGAAAC ACTGTCCTAC CTGCCACCTC TTTCAGATGA ATCCATTGCA AAGGAGGTTG ACTACATGAT CAAAAAGGGA
TGGATTCCTT GCCTTGAATT TGATGAGGTT AGTAACATAA ATTAGATTAA CAATAATTAG GTTTATGAGT ATTTATTAGA
AAAAGTAAAG ATGGTAATTG GAAGATGGAA ACAGTTGGGG CATATTTGTA GGGAAAACAG GCATATGCCA GGATACTATG
ATGGGAGGTA TTGGACATTG TGGAAGCTTC CAATGTTTGG TTGCAGTGAT TCTAGTGAAG TTCTGAAGGA GATCCATGAA
TGCAGAGAGG CATATCCAAA TGCGTATATA CGTTGCTTAG CATTTGACAA CAAGCGTCAC ATGCAGTCTA TGGCTTTTAT
CATACACAAA CCTTCTACCA CTTGACCCTT TTTTCTTCTC TTTCTCTTTC TATCATTCAC TCGCTCTCTT AAATGTAATA
TCAACTTTAT AAGTTTGCTC ATCAGACAGC TTGCAATTGT TTCTTTGAAA TTATAGTAGA CACTCAAATA TGGTTTGAAT
CTTAAGTTAT AATTTACCAC GCATTTAGTG TAATTAAATA GCATCGTGGT GTACTTTTTT AGTTGCGTAC TGCAAACGCG
AGTGTTGAAA TTGAAGGTGG GATGTGAACC TTGAAACATG CTCAACAAAA CGCAGTGTAT TTCTTATCAA CATCTTTTGG
TTTGAATTAA ATTGAT

>Vigan.01G479600.01
GTTTTCCAGC ACCAGAAATT GGAGGGCCCC AGCCTCCACT CATCAAGTTT CAATAGAATG AAGTGTCGAT GAAACCAAAT
CCTACTTTGC ACCGTCTGCA TATACTACTT TGCACATTAT TTCAGGATCT CCAAATCCTA TTTTCTTCCT CCTTTTGTCT
GACCACAAGC CTCATTCAAG ATCAAACACT GCATAACCTT TGTTTTCCAT TCAAAACTTC ATTCACTTGA GTAAAATGTC
TGCTGAAACT TTTTCAGCTC AGGTTGCTGG GGCTGCCTTT GTTGGCTTGA AGTCCAACTC ATCAAGTCTT TGCCAAAGTA
CAGCATCTAT AACATGGAAA AGGAAGATTG CTTCCAACTC TTCTAAGACT TACTGCATGA AGACATGGAA TCCCATCAAC
AACAAGAAGT TCGAAACACT GTCCTACCTG CCACCTCTTT CAGATGAATC CATTGCAAAG GAGGTTGACT ACATGATCAA
AAAGGGATGG ATTCCTTGCC TTGAATTTGA TGAGTTGGGG CATATTTGTA GGGAAAACAG GCATATGCCA GGATACTATG
ATGGGAGGTA TTGGACATTG TGGAAGCTTC CAATGTTTGG TTGCAGTGAT TCTAGTGAAG TTCTGAAGGA GATCCATGAA
TGCAGAGAGG CATATCCAAA TGCGTATATA CGTTGCTTAG CATTTGACAA CAAGCGTCAC ATGCAGTCTA TGGCTTTTAT
CATACACAAA CCTTCTACCA CTTGACCCTT TTTTCTTCTC TTTCTCTTTC TATCATTCAC TCGCTCTCTT AAATGTAATA
TCAACTTTAT AAGTTTGCTC ATCAGACAGC TTGCAATTGT TTCTTTGAAA TTATAGTAGA CACTCAAATA TGGTTTGAAT
CTTAAGTTAT AATTTACCAC GCATTTAGTG TAATTAAATA GCATCGTGGT GTACTTTTTT AGTTGCGTAC TGCAAACGCG
AGTGTTGAAA TTGAAGGTGG GATGTGAACC TTGAAACATG CTCAACAAAA CGCAGTGTAT TTCTTATCAA CATCTTTTGG
TTTGAATTAA ATTGAT

>Vigan.01G479600.01
ATGTCTGCTG AAACTTTTTC AGCTCAGGTT GCTGGGGCTG CCTTTGTTGG CTTGAAGTCC AACTCATCAA GTCTTTGCCA
AAGTACAGCA TCTATAACAT GGAAAAGGAA GATTGCTTCC AACTCTTCTA AGACTTACTG CATGAAGACA TGGAATCCCA
TCAACAACAA GAAGTTCGAA ACACTGTCCT ACCTGCCACC TCTTTCAGAT GAATCCATTG CAAAGGAGGT TGACTACATG
ATCAAAAAGG GATGGATTCC TTGCCTTGAA TTTGATGAGT TGGGGCATAT TTGTAGGGAA AACAGGCATA TGCCAGGATA
CTATGATGGG AGGTATTGGA CATTGTGGAA GCTTCCAATG TTTGGTTGCA GTGATTCTAG TGAAGTTCTG AAGGAGATCC
ATGAATGCAG AGAGGCATAT CCAAATGCGT ATATACGTTG CTTAGCATTT GACAACAAGC GTCACATGCA GTCTATGGCT
TTTATCATAC ACAAACCTTC TACCACTTGA 

>Vigan.01G479600.01
MSAETFSAQV AGAAFVGLKS NSSSLCQSTA SITWKRKIAS NSSKTYCMKT WNPINNKKFE TLSYLPPLSD ESIAKEVDYM
IKKGWIPCLE FDELGHICRE NRHMPGYYDG RYWTLWKLPM FGCSDSSEVL KEIHECREAY PNAYIRCLAF DNKRHMQSMA
FIIHKPSTT*