GBrowse Details

Vigan.01G478700.01

Basic Information:
Name: Vigan.01G478700.01
Multiple alignment
Variant Information
Position: Chr01:60747098..60752691 (+ strand)
Length: 5594
Functional Information:
Description: Similar to pseudouridine-5'-monophosphatase-like. [XP_004507854.1, Cicer arietinum]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: hydrolase activity (GO:0016787)
InterPro: HAD hydrolase, subfamily IA (IPR006439)
HAD-like domain (IPR023214)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.82,22.14,11.51,18.22,31.97,15.97,16.04
Arabidopsis thaliana homolog: AT5G57440.1
Automatic updates:
Name: NM_001255961 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max pseudouridine-5'-monophosphatase-like (LOC100786174), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:60747098..60747263 (+ strand)
Length: 166
Type: five_prime_UTR
Position: Chr01:60747264..60747342 (+ strand)
Length: 79
Type: CDS
Position: Chr01:60747513..60747737 (+ strand)
Length: 225
Type: CDS
Position: Chr01:60750595..60750655 (+ strand)
Length: 61
Type: CDS
Position: Chr01:60750827..60750974 (+ strand)
Length: 148
Type: CDS
Position: Chr01:60751162..60751241 (+ strand)
Length: 80
Type: CDS
Position: Chr01:60752288..60752420 (+ strand)
Length: 133
Type: CDS
Position: Chr01:60752421..60752691 (+ strand)
Length: 271
Type: three_prime_UTR

>Vigan.01G478700.01 class=Sequence position=Chr01:60747098..60752691 (+ strand)
TGAAAAACTA AACTCTGAAT AAATAGTTGG TCAGAATTTG ATTCCCGGAA TAACAAAAAT TGAGATATTC CTATAGAAAG
CAAATCAGGA ATCACGATTT GAAACAGGGG TTGTAGATCG GAAGCTGGAG AAGAAGTTTG CACTGTTCCT TCAGCTTTTT
CGAACAATGG CCAATCTTTC GGGTGCAGTC TCTGTTAGAA AGCCAATCAC CCACGTCATT TTCGACATGG ACGGTCTCTT
GCTCGGTATT CCATCAATCT TTAACCCACA TTCTGGTTTA CCAACATAAT TTCTTAAACA CACATGAGTT TCAAGTTTTA
TTGTTTACTG ACAGTGCTCT TGTTTTGTGA TTTTTAAGTT GGATAAAATT TCTGCTGAAA ACTTCTGTTG GTTTGGGAAT
TTGATTCTCT TGTAGACACT GAGAAGTTCT ATACACAAGT CCAGGAAATG ATACTTGCTA GATACAACAA AACCTTTGAT
TGGACCCTGA AGGCAAAGAT GATGGGAAAG AAAGCAATAG AATCTGCTAG GATCTTTGTT GAAGAGACTG GAATTAGCAA
TTCGCTTAGT CCTGAGCAGT TTCTTGCAGA AAGAGAGGAT ATGCTGCAGT CTTTGTTTCC CACAAGTGAT CTTATGCCAG
GTATGTGGAT TAACTAATGG AGATTAGACA CCCTTATCTA ATTAACTTAA AGATTGGTGT GGCTACAAAC CACGGTCTGG
TCTAATGGAA ACAGAAACTG ACATACATAC ATGGGAAGAT GTAGCTTATG TATGTATCTC TTGTAGATAC TTGGTTTGTT
GTAACTTCTA AACATTAATT CTTGACGGAG GGGTGACCTG CTTATTTGTC AAAGGTTACT AATTTTTTTT TTTGTTTAAA
TGTACCAGTA TGAATTAATA ACCTGAAGTT TGAAAGTACA GAAATCTGTC TGATGATGAT GATGATCATC ATCTATTTAG
TATGAATCCT ATGAATGTTT TTGCTTATTT CTATAAACTT TTTCGTAATG TTTATCAAGA TAAACCCTTT TCTTCTTCTT
TCAACTCGTT TCATGACTAA ATTTGTGTCA TAAGCTCTCA TGAGAGGTGT TTGGAATCAA AATAAGTTCT TTTTAACTTA
TTCTGATGAG TTTCAAGGCC AAATTTATGG CATAAACTCT TATGTGACTA GTTTATTGAA TAACCACTCA ATTAAATCTC
TTATCGAAGC ACATCCTAAA CCTTAATTGA ATAACTGTTT AATTAAGCTT ATTTTCACAA TTACACCCTG AATACTTAAT
TAAACATTTG AATATCTTAA TGCCTTACAG AAAGCATTTG AAAAACAACT GATGCATGTA TTATTATGTA CCTTTGTCTT
ATTATTAAAG GAGTTCATCA CATCACCTTT ATTGATCACA GTAACTCATT CTAATATGTA GGTTCCACTA GTAGCTTGTC
ATTCTCAATG TAGAGAGACA AATAAAATGA GTTGATTTGT GTTTTACGAT AGTCTTTTAG AAAATATAAT TTTGGAAAAC
TGGAAATCAT TTTTAGGTAG GAAAACTAGA TTGCATCAAG GGATAACGTG AAGTTTTTGT CCTATAAACC ATCTGACAGT
GGACACACTT AAAGGATGAC AGTATCCTAT AAATCAGAGT TTATTATACA CAAAACTATG TTTCCTTCAT ACACAGAGTA
GGAACAGTAA AAGATATGCA GATAAAAAGA AGAAAAGGGG ACACAAATTT GTTTACATTC GTTTGCCTCA CTAACAGTAC
ATTTAGTCCT TGGTCCACTA CCAAATTTTA CTATCCGGGT TACAAACAGT GTTTCCCAAC ACCCAAGTAT TCTTTATACT
TACCTCTTCA AAGTATTTTC TTATGCAAGC CTCTTAAGTT TTCGCACACT TACCAAAGTT AATACAATAA AAGATATCAT
CAGACTATTG ATGAGTACAG CTATAATATA TTATGAAGGT ACATAAACTC AATATTTACA ACAAGTTCAA AAAACATTTT
TCTTAAATAT TAGGAATAAA TTTGAACAAT AACTTTGGCA GCAATCGCTT TTCCTTTAGA GCAAATAGGA TGTTTTTAGA
CTTGTAAAAA TAGTTGTTGG AGGGAGTCTT CAATTCTTGA GAAGTGAGTT TTTTTTTTTT TTTTAATGTT GAAGGCCATC
GAATGCAGGC TTTAAATGTT ATCTCCTCAC AACTGGATAG TCAAATGCAT AAATAGGTTG TCTTAGAGAA CTTCTTGTAT
TTTATCTGTG TATTAGGTAA ACTTCCATTA TGGTGAAATA TATTCTTGCT TTCTGTGAGC AATTGTCTTG TCCACAATCA
CATTTATATG TTATCTAATT TTTTTCGGAT CTTTCACTTT TTTGATGTAG TAAATAAGTA AAATTATCGG TTAGTTCTTC
TAACTTGTTT CACCCTCTTG GTTTCAGTAG TTCACTTATC TTTCTTCAGT CTTTGATCAA TTAAGCTGTT ATGCATAAAG
GTTCATAATT GGTCATCACC TTGCAGAATT GAACCTTTAA ACTTGTAATT GTTCTTTGTT TAATTTATGC ATCCTTGTTT
AATATAATTG GGCATCTTCC ATCCTTTTTA TAGACACACG TGGTAAAAAC TTGAAAAGAT TCATCTCAAA ATGGATCTAC
ATGGGTTGGG ATGCGAAGAA ATTATGTAGG GATATATGTC TGCATCTCAA AATGGATCCT TGTTCAATAT AATTGGGCAT
CTTCCATCCT TTTTATGGAC ACACATTGTA AAAACTTGAA AAGTTTCTTC TCAAAATGAA TTTACTAGGA ATGAGAAGAA
ATTATATAGT GATATATGTG GATTGAACGT CAGAACTTGT ACCTTCTTTA GTGTAGTTAT AAGTTTTGAA TTCATAAAAT
TCTTATTAAA TGTATTTCTA TCATAATTTT TGTAGCTGGT GGATGCTTCT GTGTGCTACT GATATTACTG GCATCTTATT
TCAGTCTTCA AGTAGATTTG TTTTAAAATG CTTGTATTGG TTTGATGGTT ATGCTATTGA AAATCTGTTT TTAAGGATGG
ATACAATTCC TTCCTTGTGC CATTTTAGCT TCATTATGTT ACTACACCTC AAGATATTCG GCATGGAAGT TCTTTTTCTC
ATGATATGTT CTTCATTTTC AATCGGAAGT GTACATACTT GTCATATAAA AGCTCCCAAT TATTCAAGAT TCAATTTTCT
TGTTAGGCAT GGGATCTCTA AGGGGGTTCC TCCACCCAAC CCACCCACTT ACTGCATAAA TTTTTGTGTC ATTGAACTAT
AATCATAGAT CTCAAACTCA AACTCATAAA CTTCCTTATG TGCTCAAAGA TTATTGTTAA CTAAACTAGT CATTTTATTG
TGAAAGCCTT AATCTGTAGT AAACTTGTCA GCCTCAATAG ACTAGGTATA TATATATATG TACTTAAATA TACGAGTTAT
GTGTTCTTTG CAATCATGTG TATTATTGAT GTCATGCGCC ATTTTTCTCT CTCATAGGTG CCAGCCGTTT AGTCAAACAT
CTACATGCAA ACGGAGTTCC AATTGCTGTG GCAACTGGGT ACACTTCAAC CATCTCTTTT GTGTATTTGA TTTTATTTGT
TGTAAGCTAT TTACCATTTA TTGTATTTTT GTGGAGAGGG AGGGGTTAAG AAGGTATTTA TTACCTGCTA TGCTAATATC
TGTTTCTAAG GATTTGTTAT GCAAAGTGTT TTGACAATTT GCCCCACAGT TCTCACAGGC GACATTTTGA ATTGAAAACT
CAAAGACATC ATGAAATCTT CTCTTTGATG CATCATATTG TCCTTGGTGA TGATCCAGAA GTTAAACAAG GGAAACCTTC
TCCGGATGGA TTTCTTGCAG CAGCTAAGAG ATTCGAGGTA TACCAATTTA TGAATGTGGT TTACTTCTTG ACCAAATTGT
CCGATGATTA AGAGATTACA AATGCCTTTT TTCTTTTCCT AGGTTGAATA TGGGATTTGG TTTGTTTTAC TACTGTATTT
CTGACTTTGT TAAGTTTGTA GTCACACATG GTGATGTAGT TTATGTTGAA TTGATGTTCA ACAGGGTGGA CCAGTTGATC
CTTGTAACGT TCTTGTTTTT GAAGATGCAC CCGCAGGTGT TCTTGCTGCT AAAAATGCTG GAATGTAAGT GGATGAAAGC
ATTGAATGAT ATTTTATATT GTCATATTTT TAAATTTAAA TGCAACAGAC TGTGGTTTCC AAAATACGTC AGCACATGAT
AGAATGGATA GATAATTTTG TGCAAGATTT AGCAGTTTCA GATCCTGCGT TATTACTCGC ACGGAAGGTG GTTACAAATG
TCTGCATGAT ATATATAGAA ATATCAATGA TCAGGCTGGA ATTGATGAAA TCTGTGTTTT CTGTACTCAA ATTCTTCAAG
CTAACAATTA TGACAAATTG CATCTTTCTA TTGTATATAT GTTATTAGAC TCTTTCCATT CTCACTCACT CTCTCGTATA
TTGTGTACAT GACTCTGCAC ATATAATATC TTTATTACAT TTGTGTTTGA GGAGTAAAAA CCATAGCATA TGAATATCGG
AAGCTGGGTA ACAGATTGCA CTGTCTTTCA TGTTCTTGTG ATAGCTAAGT TTGAATGTTA ATTAAATGCG AGTGGCAGTT
GATAATGTTT ACAAGCAAAA TAGCCAGCGA AGCATGAATG CTCGTCACAA TTTTCCAGTT AATAAAATGA TATTCCTACC
ATTTATGCAA CCTCTAGGTT TATTTTTGTC TATTAAATTT AACATTTACT AGGTTATAGA CTATGGCTAT CCTCTTATTC
AAGGGTGATT GATTTTCCCC CTAAAAATCT CTCGCACTGT TTTGGTTCAC TGATAGATAG AAATTAGCAT AGAGATGTTA
GAAAACTCAA AACTGGAGCT AGTTCACAAC TTACTTTTGG ATCTTATAAC TTTCCTCACA ATAACAAGTC ATCAGTCTGA
CTGTGTTGAG CAATTAAATA ATATTATTTG AAAATTGTAA ATCATTAGTG ACCAGACTCA ACAGTGTGGT CCCTCATAAC
ACCAAATGAT GATGTTATTT ACACGTTCCT ATTTCTTATG ACGCATTTGT TATCCATTAG TTGCATGTTA TTATGATCAA
ACATGAATAC TTTGTCCAAT TCTAACATTA TTTTCAATTT GTTAATCTTT TCTGGTTACG TATTATGCAG GTCTGCTGTT
ATGGTCCCTG ATCCAAGGCT GGACAAATCA TTTCACGATG CAGCAGACCA AGTTTTGAAC TCACTGTTGG ATTTCAACCC
TAGTGAGTGG GCTTTACCTC CTTTTGAAGA TAATGCTAGC TAGCTAGCTG AACTTAGTTT TCTCTTACTT GCCGTCCATT
TTTACAGCGA ACAGAAAAGG CTGCATTTGT TTTGTACAAC TAAATGACGA GTAATTAATC CATTCTCATA GATTATAGAA
CCTTTATGTT ATTGTTCTGT GTGAATTACT AAATCAATAT CGATTTGTGA GATCGTGAAA GTCGACATCA TTTGCATATT
TCTCTCGTGG CATGAAGCGT AAAACGTGAT TGATTCGGTT TATTTAGAAC GAGTACTTCT CCGTTGTTGT TTCA

>Vigan.01G478700.01
TGAAAAACTA AACTCTGAAT AAATAGTTGG TCAGAATTTG ATTCCCGGAA TAACAAAAAT TGAGATATTC CTATAGAAAG
CAAATCAGGA ATCACGATTT GAAACAGGGG TTGTAGATCG GAAGCTGGAG AAGAAGTTTG CACTGTTCCT TCAGCTTTTT
CGAACAATGG CCAATCTTTC GGGTGCAGTC TCTGTTAGAA AGCCAATCAC CCACGTCATT TTCGACATGG ACGGTCTCTT
GCTCGACACT GAGAAGTTCT ATACACAAGT CCAGGAAATG ATACTTGCTA GATACAACAA AACCTTTGAT TGGACCCTGA
AGGCAAAGAT GATGGGAAAG AAAGCAATAG AATCTGCTAG GATCTTTGTT GAAGAGACTG GAATTAGCAA TTCGCTTAGT
CCTGAGCAGT TTCTTGCAGA AAGAGAGGAT ATGCTGCAGT CTTTGTTTCC CACAAGTGAT CTTATGCCAG GTGCCAGCCG
TTTAGTCAAA CATCTACATG CAAACGGAGT TCCAATTGCT GTGGCAACTG GTTCTCACAG GCGACATTTT GAATTGAAAA
CTCAAAGACA TCATGAAATC TTCTCTTTGA TGCATCATAT TGTCCTTGGT GATGATCCAG AAGTTAAACA AGGGAAACCT
TCTCCGGATG GATTTCTTGC AGCAGCTAAG AGATTCGAGG GTGGACCAGT TGATCCTTGT AACGTTCTTG TTTTTGAAGA
TGCACCCGCA GGTGTTCTTG CTGCTAAAAA TGCTGGAATG TCTGCTGTTA TGGTCCCTGA TCCAAGGCTG GACAAATCAT
TTCACGATGC AGCAGACCAA GTTTTGAACT CACTGTTGGA TTTCAACCCT AGTGAGTGGG CTTTACCTCC TTTTGAAGAT
AATGCTAGCT AGCTAGCTGA ACTTAGTTTT CTCTTACTTG CCGTCCATTT TTACAGCGAA CAGAAAAGGC TGCATTTGTT
TTGTACAACT AAATGACGAG TAATTAATCC ATTCTCATAG ATTATAGAAC CTTTATGTTA TTGTTCTGTG TGAATTACTA
AATCAATATC GATTTGTGAG ATCGTGAAAG TCGACATCAT TTGCATATTT CTCTCGTGGC ATGAAGCGTA AAACGTGATT
GATTCGGTTT ATTTAGAACG AGTACTTCTC CGTTGTTGTT TCA

>Vigan.01G478700.01
ATGGCCAATC TTTCGGGTGC AGTCTCTGTT AGAAAGCCAA TCACCCACGT CATTTTCGAC ATGGACGGTC TCTTGCTCGA
CACTGAGAAG TTCTATACAC AAGTCCAGGA AATGATACTT GCTAGATACA ACAAAACCTT TGATTGGACC CTGAAGGCAA
AGATGATGGG AAAGAAAGCA ATAGAATCTG CTAGGATCTT TGTTGAAGAG ACTGGAATTA GCAATTCGCT TAGTCCTGAG
CAGTTTCTTG CAGAAAGAGA GGATATGCTG CAGTCTTTGT TTCCCACAAG TGATCTTATG CCAGGTGCCA GCCGTTTAGT
CAAACATCTA CATGCAAACG GAGTTCCAAT TGCTGTGGCA ACTGGTTCTC ACAGGCGACA TTTTGAATTG AAAACTCAAA
GACATCATGA AATCTTCTCT TTGATGCATC ATATTGTCCT TGGTGATGAT CCAGAAGTTA AACAAGGGAA ACCTTCTCCG
GATGGATTTC TTGCAGCAGC TAAGAGATTC GAGGGTGGAC CAGTTGATCC TTGTAACGTT CTTGTTTTTG AAGATGCACC
CGCAGGTGTT CTTGCTGCTA AAAATGCTGG AATGTCTGCT GTTATGGTCC CTGATCCAAG GCTGGACAAA TCATTTCACG
ATGCAGCAGA CCAAGTTTTG AACTCACTGT TGGATTTCAA CCCTAGTGAG TGGGCTTTAC CTCCTTTTGA AGATAATGCT
AGCTAG

>Vigan.01G478700.01
MANLSGAVSV RKPITHVIFD MDGLLLDTEK FYTQVQEMIL ARYNKTFDWT LKAKMMGKKA IESARIFVEE TGISNSLSPE
QFLAEREDML QSLFPTSDLM PGASRLVKHL HANGVPIAVA TGSHRRHFEL KTQRHHEIFS LMHHIVLGDD PEVKQGKPSP
DGFLAAAKRF EGGPVDPCNV LVFEDAPAGV LAAKNAGMSA VMVPDPRLDK SFHDAADQVL NSLLDFNPSE WALPPFEDNA
S*