GBrowse Details

Vigan.01G476000.01

Basic Information:
Name: Vigan.01G476000.01
Multiple alignment
Variant Information
Position: Chr01:60503556..60505172 (+ strand)
Length: 1617
Functional Information:
Description: Similar to Xyloglucan endotransglucosylase/hydrolase. [C6THE7, Glycine max]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Biological Process: cellular glucan metabolic process (GO:0006073)
Cellular Component: cell wall (GO:0005618)
Cellular Component: apoplast (GO:0048046)
Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553)
Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762)
InterPro: Glycoside hydrolase, family 16 (IPR000757)
Glycoside hydrolase, family 16, active site (IPR008263)
Beta-glucanase (IPR008264)
Concanavalin A-like lectin/glucanases superfamily (IPR008985)
Xyloglucan endo-transglycosylase, C-terminal (IPR010713)
Concanavalin A-like lectin/glucanase, subgroup (IPR013320)
Xyloglucan endotransglucosylase/hydrolase (IPR016455)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:124.85,97.75,2.83,4.36,7.31,5.06,9.38,13.20
Automatic updates:
Name: NM_001255601 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max probable xyloglucan endotransglucosylase/hydrolase protein 23-like (LOC100785313), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:60503556..60503878 (+ strand)
Length: 323
Type: five_prime_UTR
Position: Chr01:60503879..60504154 (+ strand)
Length: 276
Type: CDS
Position: Chr01:60504255..60504448 (+ strand)
Length: 194
Type: CDS
Position: Chr01:60504609..60505014 (+ strand)
Length: 406
Type: CDS
Position: Chr01:60505015..60505172 (+ strand)
Length: 158
Type: three_prime_UTR

>Vigan.01G476000.01 class=Sequence position=Chr01:60503556..60505172 (+ strand)
TTACACTTAC TTTATCAACT CTCGGGAAAA GCAACGTAAA CCCGCGTGAT CCCCTGCCAC CAATATCACC TTCTCAAATT
ATTAAATTAA TCAAAACACG ACACAACTTG CTTTCATAAC AACCTTTTCA CAGCTTTCTT CTTACCATAA TACAACTATC
TATCCACGTG TCCTTTTCCT CTCCCACTTG CTCCAAATCT CAACCACCCT CACTTTCACT CACTATATAT ACCTTCTTCT
CTCTTCCATC GTCTCATCAC ACCGCAAACA TCAACGCTTC ATTTCCCACT AAACATTGCA AACCTTCCCT GTTCATTTCT
CAAATGGCTT CAACCAATTC TCCTAGCCTA CCACTTCTTC CTATCCTTCT AAGTGCTTAC TTTCTTCTCA GTGCTGCTGC
TAACTTCAAC CAAGACTTTC AGATTACGTG GGGAGATGGT CGTGCCAAAA TTCTCAACAA CGCCAATCTT CTCACTCTGT
CTCTTGACAG AGCCTCTGGC TCTGGCTTCC AGTCCAAGAA CGAATACTTG TTTGGAAAGA TCGACATGCA GCTCAAGCTC
GTTCCTGGAA ACTCTGCTGG CACTGTCACT GCTTATTATG TAAGTTCCAT TTCATAAATC ATGGAGACCG CATTTGCATG
ATTTGTTCTT ACCTAACAAT GACAGAGACT TATAATATTG TTTGTTTTTC TCTTTTCAGT TGCGTTCAGA AGGGTCATCT
TGGGATGAGA TAGACTTTGA GTTCCTGGGA AATCTGAGCG GTGATCCTTA CATTGTTCAT ACTAATGTGT TCACACAAGG
CAAGGGTAAC AGAGAGCAGC AATTCTATCT CTGGTTTGAC CCAACTGCAG ATTTCCACAC ATATTCGATT CTCTGGAATC
CCCAGCGCAT TGTGTAAGCA CTCAGCACCC AATCCAATCT TCTACAAGCC GATGGAAAAA AAAAAAAAAA CACAAATCTT
CTTCACATAT AAAATTGCAA GCTACTACAA TTCTTCGATG CACATCATTT GTTTCAGTCA CTAATTTCTG TCTCCTATAA
CTGTGTGTTG CAGATTTTCT GTGGATGGAA CCCCCATCAG AGAGTACAAG AATTTGGAAT CAATTGGGAT TCCTTTTCCG
AAGAGCCAAC CCATGAGGAT ATACTCGAGC CTTTGGAACG CTGATGATTG GGCCACAAGG GGTGGACTCA TCAAAACTGA
TTGGTCGAAA GCTCCTTTCA CTGCTTCCTA CAGGAACTTC AATGCCAATG CTTGTGTTTG GAATGCAGGA AAATCCTCAT
GTAAATCAAA TTCTCCTTCC TCTGCTGCTC CTGCCACTAA TGCATGGCTA TCACAAGAGC TGGATTCAAC TGCCCAGAAG
AGGATGAACT GGGTGCAGAA CAATTACATG ATTTACAATT ACTGTAAGGA TAGGAAGAGA TTCCCTCAAG GCCTTCCACT
TGAATGCACA CACTCCTAGA ACTGGATTTC GATCTTCCAA TACCCACAAC AAGTGATACA AAAAAAACCA TTCTTTTATT
ACTTTTTTCT TCATATCTCT ATGTTTCTTC GCCGTTCGTG CTCTTTTATG ATGTAAAAAT ATCTACAATA AAATAACGGT
TTTGTTATAG TGAGCGT

>Vigan.01G476000.01
TTACACTTAC TTTATCAACT CTCGGGAAAA GCAACGTAAA CCCGCGTGAT CCCCTGCCAC CAATATCACC TTCTCAAATT
ATTAAATTAA TCAAAACACG ACACAACTTG CTTTCATAAC AACCTTTTCA CAGCTTTCTT CTTACCATAA TACAACTATC
TATCCACGTG TCCTTTTCCT CTCCCACTTG CTCCAAATCT CAACCACCCT CACTTTCACT CACTATATAT ACCTTCTTCT
CTCTTCCATC GTCTCATCAC ACCGCAAACA TCAACGCTTC ATTTCCCACT AAACATTGCA AACCTTCCCT GTTCATTTCT
CAAATGGCTT CAACCAATTC TCCTAGCCTA CCACTTCTTC CTATCCTTCT AAGTGCTTAC TTTCTTCTCA GTGCTGCTGC
TAACTTCAAC CAAGACTTTC AGATTACGTG GGGAGATGGT CGTGCCAAAA TTCTCAACAA CGCCAATCTT CTCACTCTGT
CTCTTGACAG AGCCTCTGGC TCTGGCTTCC AGTCCAAGAA CGAATACTTG TTTGGAAAGA TCGACATGCA GCTCAAGCTC
GTTCCTGGAA ACTCTGCTGG CACTGTCACT GCTTATTATT TGCGTTCAGA AGGGTCATCT TGGGATGAGA TAGACTTTGA
GTTCCTGGGA AATCTGAGCG GTGATCCTTA CATTGTTCAT ACTAATGTGT TCACACAAGG CAAGGGTAAC AGAGAGCAGC
AATTCTATCT CTGGTTTGAC CCAACTGCAG ATTTCCACAC ATATTCGATT CTCTGGAATC CCCAGCGCAT TGTATTTTCT
GTGGATGGAA CCCCCATCAG AGAGTACAAG AATTTGGAAT CAATTGGGAT TCCTTTTCCG AAGAGCCAAC CCATGAGGAT
ATACTCGAGC CTTTGGAACG CTGATGATTG GGCCACAAGG GGTGGACTCA TCAAAACTGA TTGGTCGAAA GCTCCTTTCA
CTGCTTCCTA CAGGAACTTC AATGCCAATG CTTGTGTTTG GAATGCAGGA AAATCCTCAT GTAAATCAAA TTCTCCTTCC
TCTGCTGCTC CTGCCACTAA TGCATGGCTA TCACAAGAGC TGGATTCAAC TGCCCAGAAG AGGATGAACT GGGTGCAGAA
CAATTACATG ATTTACAATT ACTGTAAGGA TAGGAAGAGA TTCCCTCAAG GCCTTCCACT TGAATGCACA CACTCCTAGA
ACTGGATTTC GATCTTCCAA TACCCACAAC AAGTGATACA AAAAAAACCA TTCTTTTATT ACTTTTTTCT TCATATCTCT
ATGTTTCTTC GCCGTTCGTG CTCTTTTATG ATGTAAAAAT ATCTACAATA AAATAACGGT TTTGTTATAG TGAGCGT

>Vigan.01G476000.01
ATGGCTTCAA CCAATTCTCC TAGCCTACCA CTTCTTCCTA TCCTTCTAAG TGCTTACTTT CTTCTCAGTG CTGCTGCTAA
CTTCAACCAA GACTTTCAGA TTACGTGGGG AGATGGTCGT GCCAAAATTC TCAACAACGC CAATCTTCTC ACTCTGTCTC
TTGACAGAGC CTCTGGCTCT GGCTTCCAGT CCAAGAACGA ATACTTGTTT GGAAAGATCG ACATGCAGCT CAAGCTCGTT
CCTGGAAACT CTGCTGGCAC TGTCACTGCT TATTATTTGC GTTCAGAAGG GTCATCTTGG GATGAGATAG ACTTTGAGTT
CCTGGGAAAT CTGAGCGGTG ATCCTTACAT TGTTCATACT AATGTGTTCA CACAAGGCAA GGGTAACAGA GAGCAGCAAT
TCTATCTCTG GTTTGACCCA ACTGCAGATT TCCACACATA TTCGATTCTC TGGAATCCCC AGCGCATTGT ATTTTCTGTG
GATGGAACCC CCATCAGAGA GTACAAGAAT TTGGAATCAA TTGGGATTCC TTTTCCGAAG AGCCAACCCA TGAGGATATA
CTCGAGCCTT TGGAACGCTG ATGATTGGGC CACAAGGGGT GGACTCATCA AAACTGATTG GTCGAAAGCT CCTTTCACTG
CTTCCTACAG GAACTTCAAT GCCAATGCTT GTGTTTGGAA TGCAGGAAAA TCCTCATGTA AATCAAATTC TCCTTCCTCT
GCTGCTCCTG CCACTAATGC ATGGCTATCA CAAGAGCTGG ATTCAACTGC CCAGAAGAGG ATGAACTGGG TGCAGAACAA
TTACATGATT TACAATTACT GTAAGGATAG GAAGAGATTC CCTCAAGGCC TTCCACTTGA ATGCACACAC TCCTAG

>Vigan.01G476000.01
MASTNSPSLP LLPILLSAYF LLSAAANFNQ DFQITWGDGR AKILNNANLL TLSLDRASGS GFQSKNEYLF GKIDMQLKLV
PGNSAGTVTA YYLRSEGSSW DEIDFEFLGN LSGDPYIVHT NVFTQGKGNR EQQFYLWFDP TADFHTYSIL WNPQRIVFSV
DGTPIREYKN LESIGIPFPK SQPMRIYSSL WNADDWATRG GLIKTDWSKA PFTASYRNFN ANACVWNAGK SSCKSNSPSS
AAPATNAWLS QELDSTAQKR MNWVQNNYMI YNYCKDRKRF PQGLPLECTH S*