GBrowse Details

Vigan.01G474200.01

Basic Information:
Name: Vigan.01G474200.01
Multiple alignment
Variant Information
Position: Chr01:60314191..60316360 (- strand)
Length: 2170
Functional Information:
Description: Similar to Uncharacterized protein. [D0EP03, Glycine max]
GO: Cellular Component: intracellular (GO:0005622)
Molecular Function: protein binding (GO:0005515)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, B-box (IPR000315)
CCT domain (IPR010402)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:29.09,1.30,37.32,183.86,14.14,29.54,10.06,56.86
Arabidopsis thaliana homolog: AT5G57660.1
Automatic updates:
Name: NM_001253043 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max zinc finger protein CONSTANS-LIKE 5-like (COL8), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:60314191..60314750 (- strand)
Length: 560
Type: three_prime_UTR
Position: Chr01:60314751..60315128 (- strand)
Length: 378
Type: CDS
Position: Chr01:60315221..60315961 (- strand)
Length: 741
Type: CDS
Position: Chr01:60315962..60316360 (- strand)
Length: 399
Type: five_prime_UTR

>Vigan.01G474200.01 class=Sequence position=Chr01:60314191..60316360 (- strand)
CTCCGTTGCG TTGTTTTAGT AAGAAATAAA AATGTTAAAA AAGCATAGTG ATTGCATCTA ATGTCCGTGA CGGGCCCACG
TCGGCACAGA CACAACACGA TGACAACTAC TACTCCGCAA TACATATCTA TTCTAATATT GTTGGTCTGA GCGAACCATT
TATGTGGCCA AGAGTGAACC ACGTGTCCCG CATTGATTCG TTATCACCTA GATTTCCTCT CTGCGACCAG TGAGTAATAT
AGATAATAGA AAAACCGCAC CCAAAGAAAT CAACTTACAC ACTCGTCTCC ACGTTTAGGT CGCTCTAACT CTATTCCATT
CCACTCCTCG TTGGGAATTG AAAGAGTAGT ACCGTTAGAT TAGCCGCGTT TTTCAAAACT GTTTCTTTCT GTTCAGACCA
TGGGAATTGA AAAAGGAGGC TTGAAGGGGT TCAGGAGCGG CTGGACCGTG CCGCCAAAGC CGTGTGACTC CTGCAAGTTG
GCTTCGGCGG CGCTTTTCTG CCGTCCCGAT TCCGCTTTTC TCTGCATCGC CTGCGACTCC AAGATTCACT GCGCCAACAA
GCTGGCGTCG CGCCACGAGC GCGTCTGGAT GTGCGAGGTC TGCGAGCAGG CACCCGCGGC TGTCACGTGC AAGGCTGACG
CCGCCGCCCT CTGCATCACG TGTGACTCTG ACATCCACTC TGCCAACCCC CTCGCGCGCC GCCACGACCG CGTCCCCGTT
GAGCCTTTCT TCGACTCTGC CGAATCCATC GTCAAGGCCT CCGCCGCCGC CTCCTTCGGC TTCATCGTCC CCTCCGACGA
CGCCACCGCT GCTTCCGATG CCTTCGCACC CGACGACCCC GACGCTGCCG CCTGGCTCAT CCCTAACCCC AATTTCGGGT
CGAAATTCAT GGACGCCCCT GACATCAAGT CCAAGGAGAT CTTCTACTCA GAAATGGACC CCTTCCTCGA CTTCGATTAC
TCAAACTCCT TCCACAACAA CAACTCCGGA AACGACAGTG TCGTTCCAGT TCAAACCAAA CCTTCCCTCG CTCCTTCCCT
CGTCAATAAC CACCAACAAT CAGAAAGCTG TTTCGACATC GATTTTTGCC GCACCAAACT TTCCTCCTTT AATTACCCAT
CCCAGTCTCT TAGCCAAAGC GTGAGTACTA CCATCCAGTA ACAAATTTGA AATATTATGT ATAAATTTTT GGTCTTCCAG
TGAATTGACT GGAGAATTGA ATTATGTAAC AGGTTTCGTC GTCATCGCTT GATGTTGGAG TGGTGCCGGA CGGGAACACC
GTGTCGGAGA TGTCGTACTC GTTTGGTCGG AACAGTTCGG AATCGAGTGG GATTGGTTTG TCAGGAGTAA GTGGAGGGCA
AGGGGCGACG CAGTTGTGTG GGATGGATCG TGAAGCGAGG GTGCTGCGAT ACAGAGAGAA GAGGAAGAAC CGAAAGTTCG
AGAAAACCAT TCGATACGCA TCGCGGAAGG CTTATGCGGA AACCCGACCC AGGATAAAAG GGCGGTTCGC GAAGCGAGCA
GAAATTGACT CTGATGTGGA GCGTCTCTAC AGTCCAGGCG CTGCGTCGCT GATGCTGGAC AGTCCATACG GCGTGGTACC
GTCGTTTTAG TTATTGGTAT AAAAGAGGAA ACGATGACGG GATGGTGCAT GAATCTAGTG TTGGGAAATC TTAGAATAAT
GATTAGTGAT TCTGTGGGAT TGATTATTAG GGAAAAAGGT GAAGAATCGA TACGAACGTG ATTCTTACCT GGAACGCCAC
GGGGAAGGTT GTTTCATTAG GATGGAGGAG AAAAGCCCGT TTACTTTTTT TTTTTTTTCT AAAGAACTTT AAAGGGGCTG
CATCTTCGTC TTCACCTCGT GTAGCATTAG AATCTGTACT GTAAACTCTT TTCACTGCCT TACCTTCCCT GCTGTCTTTT
TTTTAGTATA AAAAAGTCTC TTTTCTCTAT CACCCTGATC ACGGATCTCT TTCCCCCTTC CTATTGGCTG CCATTTCCAA
CTTATATATA TATAAATCAC TTCTTTATTT CACTGTCATC AAACCCTTTC TTCTTTTAAC GCTCCATACG CCCTCAGCTT
TTGATTCCCT CATATTCCTT CCTAACTACT CCTGCTTTAA TCTCTTATGT AAATATTGTT TCACCATTTT AATTTCTGCT
CTTTTGCTTT 

>Vigan.01G474200.01
CTCCGTTGCG TTGTTTTAGT AAGAAATAAA AATGTTAAAA AAGCATAGTG ATTGCATCTA ATGTCCGTGA CGGGCCCACG
TCGGCACAGA CACAACACGA TGACAACTAC TACTCCGCAA TACATATCTA TTCTAATATT GTTGGTCTGA GCGAACCATT
TATGTGGCCA AGAGTGAACC ACGTGTCCCG CATTGATTCG TTATCACCTA GATTTCCTCT CTGCGACCAG TGAGTAATAT
AGATAATAGA AAAACCGCAC CCAAAGAAAT CAACTTACAC ACTCGTCTCC ACGTTTAGGT CGCTCTAACT CTATTCCATT
CCACTCCTCG TTGGGAATTG AAAGAGTAGT ACCGTTAGAT TAGCCGCGTT TTTCAAAACT GTTTCTTTCT GTTCAGACCA
TGGGAATTGA AAAAGGAGGC TTGAAGGGGT TCAGGAGCGG CTGGACCGTG CCGCCAAAGC CGTGTGACTC CTGCAAGTTG
GCTTCGGCGG CGCTTTTCTG CCGTCCCGAT TCCGCTTTTC TCTGCATCGC CTGCGACTCC AAGATTCACT GCGCCAACAA
GCTGGCGTCG CGCCACGAGC GCGTCTGGAT GTGCGAGGTC TGCGAGCAGG CACCCGCGGC TGTCACGTGC AAGGCTGACG
CCGCCGCCCT CTGCATCACG TGTGACTCTG ACATCCACTC TGCCAACCCC CTCGCGCGCC GCCACGACCG CGTCCCCGTT
GAGCCTTTCT TCGACTCTGC CGAATCCATC GTCAAGGCCT CCGCCGCCGC CTCCTTCGGC TTCATCGTCC CCTCCGACGA
CGCCACCGCT GCTTCCGATG CCTTCGCACC CGACGACCCC GACGCTGCCG CCTGGCTCAT CCCTAACCCC AATTTCGGGT
CGAAATTCAT GGACGCCCCT GACATCAAGT CCAAGGAGAT CTTCTACTCA GAAATGGACC CCTTCCTCGA CTTCGATTAC
TCAAACTCCT TCCACAACAA CAACTCCGGA AACGACAGTG TCGTTCCAGT TCAAACCAAA CCTTCCCTCG CTCCTTCCCT
CGTCAATAAC CACCAACAAT CAGAAAGCTG TTTCGACATC GATTTTTGCC GCACCAAACT TTCCTCCTTT AATTACCCAT
CCCAGTCTCT TAGCCAAAGC GTTTCGTCGT CATCGCTTGA TGTTGGAGTG GTGCCGGACG GGAACACCGT GTCGGAGATG
TCGTACTCGT TTGGTCGGAA CAGTTCGGAA TCGAGTGGGA TTGGTTTGTC AGGAGTAAGT GGAGGGCAAG GGGCGACGCA
GTTGTGTGGG ATGGATCGTG AAGCGAGGGT GCTGCGATAC AGAGAGAAGA GGAAGAACCG AAAGTTCGAG AAAACCATTC
GATACGCATC GCGGAAGGCT TATGCGGAAA CCCGACCCAG GATAAAAGGG CGGTTCGCGA AGCGAGCAGA AATTGACTCT
GATGTGGAGC GTCTCTACAG TCCAGGCGCT GCGTCGCTGA TGCTGGACAG TCCATACGGC GTGGTACCGT CGTTTTAGTT
ATTGGTATAA AAGAGGAAAC GATGACGGGA TGGTGCATGA ATCTAGTGTT GGGAAATCTT AGAATAATGA TTAGTGATTC
TGTGGGATTG ATTATTAGGG AAAAAGGTGA AGAATCGATA CGAACGTGAT TCTTACCTGG AACGCCACGG GGAAGGTTGT
TTCATTAGGA TGGAGGAGAA AAGCCCGTTT ACTTTTTTTT TTTTTTCTAA AGAACTTTAA AGGGGCTGCA TCTTCGTCTT
CACCTCGTGT AGCATTAGAA TCTGTACTGT AAACTCTTTT CACTGCCTTA CCTTCCCTGC TGTCTTTTTT TTAGTATAAA
AAAGTCTCTT TTCTCTATCA CCCTGATCAC GGATCTCTTT CCCCCTTCCT ATTGGCTGCC ATTTCCAACT TATATATATA
TAAATCACTT CTTTATTTCA CTGTCATCAA ACCCTTTCTT CTTTTAACGC TCCATACGCC CTCAGCTTTT GATTCCCTCA
TATTCCTTCC TAACTACTCC TGCTTTAATC TCTTATGTAA ATATTGTTTC ACCATTTTAA TTTCTGCTCT TTTGCTTT

>Vigan.01G474200.01
ATGGGAATTG AAAAAGGAGG CTTGAAGGGG TTCAGGAGCG GCTGGACCGT GCCGCCAAAG CCGTGTGACT CCTGCAAGTT
GGCTTCGGCG GCGCTTTTCT GCCGTCCCGA TTCCGCTTTT CTCTGCATCG CCTGCGACTC CAAGATTCAC TGCGCCAACA
AGCTGGCGTC GCGCCACGAG CGCGTCTGGA TGTGCGAGGT CTGCGAGCAG GCACCCGCGG CTGTCACGTG CAAGGCTGAC
GCCGCCGCCC TCTGCATCAC GTGTGACTCT GACATCCACT CTGCCAACCC CCTCGCGCGC CGCCACGACC GCGTCCCCGT
TGAGCCTTTC TTCGACTCTG CCGAATCCAT CGTCAAGGCC TCCGCCGCCG CCTCCTTCGG CTTCATCGTC CCCTCCGACG
ACGCCACCGC TGCTTCCGAT GCCTTCGCAC CCGACGACCC CGACGCTGCC GCCTGGCTCA TCCCTAACCC CAATTTCGGG
TCGAAATTCA TGGACGCCCC TGACATCAAG TCCAAGGAGA TCTTCTACTC AGAAATGGAC CCCTTCCTCG ACTTCGATTA
CTCAAACTCC TTCCACAACA ACAACTCCGG AAACGACAGT GTCGTTCCAG TTCAAACCAA ACCTTCCCTC GCTCCTTCCC
TCGTCAATAA CCACCAACAA TCAGAAAGCT GTTTCGACAT CGATTTTTGC CGCACCAAAC TTTCCTCCTT TAATTACCCA
TCCCAGTCTC TTAGCCAAAG CGTTTCGTCG TCATCGCTTG ATGTTGGAGT GGTGCCGGAC GGGAACACCG TGTCGGAGAT
GTCGTACTCG TTTGGTCGGA ACAGTTCGGA ATCGAGTGGG ATTGGTTTGT CAGGAGTAAG TGGAGGGCAA GGGGCGACGC
AGTTGTGTGG GATGGATCGT GAAGCGAGGG TGCTGCGATA CAGAGAGAAG AGGAAGAACC GAAAGTTCGA GAAAACCATT
CGATACGCAT CGCGGAAGGC TTATGCGGAA ACCCGACCCA GGATAAAAGG GCGGTTCGCG AAGCGAGCAG AAATTGACTC
TGATGTGGAG CGTCTCTACA GTCCAGGCGC TGCGTCGCTG ATGCTGGACA GTCCATACGG CGTGGTACCG TCGTTTTAG

>Vigan.01G474200.01
MGIEKGGLKG FRSGWTVPPK PCDSCKLASA ALFCRPDSAF LCIACDSKIH CANKLASRHE RVWMCEVCEQ APAAVTCKAD
AAALCITCDS DIHSANPLAR RHDRVPVEPF FDSAESIVKA SAAASFGFIV PSDDATAASD AFAPDDPDAA AWLIPNPNFG
SKFMDAPDIK SKEIFYSEMD PFLDFDYSNS FHNNNSGNDS VVPVQTKPSL APSLVNNHQQ SESCFDIDFC RTKLSSFNYP
SQSLSQSVSS SSLDVGVVPD GNTVSEMSYS FGRNSSESSG IGLSGVSGGQ GATQLCGMDR EARVLRYREK RKNRKFEKTI
RYASRKAYAE TRPRIKGRFA KRAEIDSDVE RLYSPGAASL MLDSPYGVVP SF*