GBrowse Details

Vigan.01G458800.01

Basic Information:
Name: Vigan.01G458800.01
Multiple alignment
Variant Information
Position: Chr01:58849292..58852941 (+ strand)
Length: 3650
Functional Information:
Description: Similar to Uncharacterized protein. [I1JZM9, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, RING-type (IPR001841)
Zinc finger, RING/FYVE/PHD-type (IPR013083)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:42.60,13.27,11.14,16.40,14.52,19.99,23.56,10.11
Arabidopsis thaliana homolog: AT1G74410.1
Automatic updates:
Name: NM_001251492 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max RING/U-box superfamily protein (LOC100306666), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:58849292..58849551 (+ strand)
Length: 260
Type: five_prime_UTR
Position: Chr01:58849552..58849651 (+ strand)
Length: 100
Type: CDS
Position: Chr01:58850261..58850439 (+ strand)
Length: 179
Type: CDS
Position: Chr01:58850642..58850725 (+ strand)
Length: 84
Type: CDS
Position: Chr01:58852213..58852374 (+ strand)
Length: 162
Type: CDS
Position: Chr01:58852589..58852711 (+ strand)
Length: 123
Type: CDS
Position: Chr01:58852712..58852941 (+ strand)
Length: 230
Type: three_prime_UTR

>Vigan.01G458800.01 class=Sequence position=Chr01:58849292..58852941 (+ strand)
TTTTCCTTGA CCTTACCAAG CCCTATCATA CCATCAAATT CCATCATCTT CATCACTTTT CTTTCAATTG ACCTTACCTT
ACCTCACCTT TCAATTCATT TTTTTCGTTT CCCATCCCTT CAAATCCCAT CATCATCATC GTCGTCATCA TCGCATCATC
TTATCACCAA TAAACAACAA GAAGAACAAC AGCCATGGCC TTGAAGTCTG CAACTCTCTG ACATATAATT AGATTCCCAG
TTTGGGTTGG GTTGGGCACT ATGGAAACTG AAATAATCCA GGGACCTTGG GGATTTCGCT CTCTACCCAA ATTCATATTG
TGCACCATTT CTGGGGCCCT CACCGTGTGT TTTGCCATTG GTAATTTATT CCTTTTCGTT TGTTTTCCTT CATGGATATA
TCAATGCTTT GTTTTGATTA GTGGGGCGTC ATTAAAATGA ATCTTGTCGT CCTAAAGTTG GAGTCTTTTT TATAATTGCT
TTTGACTATT AAGGTGTAAT TCTCGAGGCT TCTTGCTAAC TAGAAAATAG AAATACAAGA TTAAATTGTA CCATGCATAA
ATCAAATTTA TGTTGCATTT TTTATGTCGC AAAACTTGGA TGGTGTTACT TGGGTGGTTT TAGTGCTGTT TTCCTGTTGC
AATTGGAGTT TTATTCAATA ATCAATATGA TATCTGCTTG CATCAAAGGT TAACATAGTT TTTACAGGTG AAACTCTAAT
CTGATTAAAA AAAATTACTG AAAGCACGTA CGTATTTGTA TTTAAGTTTT TTTCCCCCTT CCTATGATCT GAATTGGTGA
TAATGAAATT AATGGTTGTT GTGAAGTTGT TGGTGAAGGT GCTTTTGTTT ACAAGGGTGG AAACAATTCA GAGTGGAGAA
TGTTTTCCTG GCCAGTAATC ACTATTTTTT GGTGTTGCTA ACTGTGATGT TTGATTATAT TAGTCTCATG TTCTGTTTTA
TGGTTGCAGC TGGTGCCATG ACAGGAGCTA TAGCCGGTGC TTTAGCAGCT AAGGCTACAA GGAGCGGTCT TCTCCGGGGA
GTTTCTTTGG GTGCCATTGC CGGGTCTATA CTCTCAGTGG AGGTGTTGGA AGCTTCCCGT GCATACTGGT GTATGGAACA
AACTGGCTCA CGGGGAGCAT CATCTATGGT TGGTAGTCAT TTTATTGTTG ATTTTCCTTG GTCTAAGTAA AATGATCTGT
AACTTTCAAA TTTTAGAGGC ATAAAATGGC TACCTTTTTA AGTTTTATGC CTTGCCTGCT CATTAAGTAG CATTTTAAGA
GCGATTTAGA CCTTATGCAT GGCATTCTTA ATTCGTAGTT TTAAGCCAAT GTTTTAACTT TTAAATCCAG GCAGATTTCA
TAGAGGAACT TGTTCGGGGG AGGCTTGTTG AGGAATCCCT TACACCAGCC ATTTTAACTG CCTACAACTT GCAGGTAATT
TTCCTTTCCC TCACGCACCA CATTTACCTT TTTGCAAGCA ATAGTTGTAT ATTTCCGCGG ATTGATATAA TAACCTTGGT
GCATCACCCA ATGTTTGAAT TGGTAATACT GAGAGCTTAT GGGTATGGCC AATTTTTTAT AACCTTAATC CTGTAAGGCT
TTTGAGTAAC GGCACTTGTT TTAGATTTTT TTTCTTTGCA ATATGGAAGC AGGCAAAATG ACAGTTTCTT TTTCCTCCTC
CTCTTGGCTA GTATTATGAA GATATTCACT ATTCTTGAAT TAGAGACGAA CCTCTTTTTC TTTCAATTCA ACTAAAATTG
GTTTCTCAGT TTGATCAGCT TCTTCCAAAT TCATGTAACC TATTTAGCTA TTGAAATCTG ACTGTTGAGG TTGAAAAAGA
AGCACAATCA AACTAATCAC TTCGTAAAAA AAGCCTCTAA ACTTTTAGAA TGCAAATCAT GGTAGAGTGA TCTGCTGATA
TATTTGATAG TTTAGTAAAC AAATATTCGA CGTAGTAAAG CAAAAACAAA GATTTCGCCG CCGAGAATTT GTTTTCGTAA
AGGAAATCAA GCATGAATGG TACATTAATC AAATCAAGAT ATGGTACCAT GGTTAATCCT AAATCTTTTG AAGGATTTTG
TATTTTATTT ATCTGAAAAT TTAAGCTAAG TTGGACAAGG AATTCCTCAA TCAACAATTG TCTCTAGATT GAGGAATATC
TAGGATCTCC TTCCTAAATT TGCAATCAAA AGTTATAACT CGTGACCTTG TTAGATTGTC AGTCCGTAGT TAGATGTCCA
CAACTTCCTG CTCAATACAG AGTGCAAATC ATGCCCAGTA ATCAAAATCT TTAGACACAC GGACAAGATT TGAATCGTGA
ATCCAAATAT TCTGATAACT CATGACTATG AACACAGATG CCGTTTTAAT GCATTGCTTT TTAAGGTTGC ACTAGTGCAC
TCGAGGTGTG TCGGTGCACT GTGAACTTTG CCAACTATGT ATGACGTCCA GTTGTTACGA TACCAGAGGA GAGAAAAGTG
AAATTACTGA ATTGTAAAAG TTGTTTGCAT GGTAATTATG TGCGCTTATA TAGTAGAGAG ATTATTCGTC TCGCAACTAA
TGACAGTTGC ATCTATAGTA ATATCACTTT CATCGGAACT GTAGCTGTAT ATGCACATGA TTATCTTTAA ATTTTAATGT
CTTTTAACGA CACAACTTCA TTTTTATACC TGCTTTCAAC TGCTTGTTGA TTTTTGTGAC CCCTTTGTAG ACCACTTTGG
TTTTAACAAG CACAGTTAAA GCTTATTTAC ATATAACTGA TATGAACATG TGTAAATGTG TGAACATCTG TAAATGTTTG
CTGATTTGAT TGCTTAGTAC ATTATCGTTA AGAAGTTCAT TATCAATTCT GTACTTAGAC TATCTTATGT CGTGATCTGT
TGGATAGTGA CCACCTTTTG ACGTATGATC ATTCGTTTTA GTTTGAGCAG GTTGGCATTG CTAATGCAGG CTATGATGAG
ATTCATGATG TTCATGGCTT GGTGGCACCG AGAGGATTGT CAGGAGATTC GCTCAAGAGG TTACCACACC ATATGATCTC
AAAGGATATG AAGGCAGAAA ATACTTGTAC AATATGTTTG CAGGTGATCA TTGTTTTTTA AGATATGTGA ATGCCCTAAT
CCCTTTTCAT TACCTGTGTT AAAAACAATA TAGAAGAACA AAGAATATTG GTAAGATGGT TCCGAAAATA CTAATATTAA
ACCACCTGTA GGTAGGTATT AAATTGATTC CATATTTGAT TTCTTTTTAT GAAACTGTTA ATGTAATGGT CTAAATATCT
AGAAGTGAAA TTCACAGGAT ATTGAAGTAG GCGAAATTGC AAGAAGCTTA CCTCGCTGTC ACCATACATT TCACTTGATA
TGTGTGGACA AATGGCTTGT CAAGAATGAT TCCTGTCCTG TCTGTAGGCA GAATGTGTAA TTGTTGCTTG TGCATTCTGA
GATTATCTTT ATGGGAAGAT GTATAAGTTG TATAATTTGT TTTTATAAAC TGCATTAAGT TTTGTACAGT TGACTTTGGC
ATTTTGTAGT ATTATCTGAT GTAATTATTA ATAAGACTAT TTGCCCAATA ACAAATGTTT TGGGAGAAAA AGAATTTAGA
AAATAGCATG CTTTAATATT TGAACGAATG ACTCTTACTT TCATAAGCAC 

>Vigan.01G458800.01
TTTTCCTTGA CCTTACCAAG CCCTATCATA CCATCAAATT CCATCATCTT CATCACTTTT CTTTCAATTG ACCTTACCTT
ACCTCACCTT TCAATTCATT TTTTTCGTTT CCCATCCCTT CAAATCCCAT CATCATCATC GTCGTCATCA TCGCATCATC
TTATCACCAA TAAACAACAA GAAGAACAAC AGCCATGGCC TTGAAGTCTG CAACTCTCTG ACATATAATT AGATTCCCAG
TTTGGGTTGG GTTGGGCACT ATGGAAACTG AAATAATCCA GGGACCTTGG GGATTTCGCT CTCTACCCAA ATTCATATTG
TGCACCATTT CTGGGGCCCT CACCGTGTGT TTTGCCATTG CTGGTGCCAT GACAGGAGCT ATAGCCGGTG CTTTAGCAGC
TAAGGCTACA AGGAGCGGTC TTCTCCGGGG AGTTTCTTTG GGTGCCATTG CCGGGTCTAT ACTCTCAGTG GAGGTGTTGG
AAGCTTCCCG TGCATACTGG TGTATGGAAC AAACTGGCTC ACGGGGAGCA TCATCTATGG CAGATTTCAT AGAGGAACTT
GTTCGGGGGA GGCTTGTTGA GGAATCCCTT ACACCAGCCA TTTTAACTGC CTACAACTTG CAGTTTGAGC AGGTTGGCAT
TGCTAATGCA GGCTATGATG AGATTCATGA TGTTCATGGC TTGGTGGCAC CGAGAGGATT GTCAGGAGAT TCGCTCAAGA
GGTTACCACA CCATATGATC TCAAAGGATA TGAAGGCAGA AAATACTTGT ACAATATGTT TGCAGGATAT TGAAGTAGGC
GAAATTGCAA GAAGCTTACC TCGCTGTCAC CATACATTTC ACTTGATATG TGTGGACAAA TGGCTTGTCA AGAATGATTC
CTGTCCTGTC TGTAGGCAGA ATGTGTAATT GTTGCTTGTG CATTCTGAGA TTATCTTTAT GGGAAGATGT ATAAGTTGTA
TAATTTGTTT TTATAAACTG CATTAAGTTT TGTACAGTTG ACTTTGGCAT TTTGTAGTAT TATCTGATGT AATTATTAAT
AAGACTATTT GCCCAATAAC AAATGTTTTG GGAGAAAAAG AATTTAGAAA ATAGCATGCT TTAATATTTG AACGAATGAC
TCTTACTTTC ATAAGCAC

>Vigan.01G458800.01
ATGGAAACTG AAATAATCCA GGGACCTTGG GGATTTCGCT CTCTACCCAA ATTCATATTG TGCACCATTT CTGGGGCCCT
CACCGTGTGT TTTGCCATTG CTGGTGCCAT GACAGGAGCT ATAGCCGGTG CTTTAGCAGC TAAGGCTACA AGGAGCGGTC
TTCTCCGGGG AGTTTCTTTG GGTGCCATTG CCGGGTCTAT ACTCTCAGTG GAGGTGTTGG AAGCTTCCCG TGCATACTGG
TGTATGGAAC AAACTGGCTC ACGGGGAGCA TCATCTATGG CAGATTTCAT AGAGGAACTT GTTCGGGGGA GGCTTGTTGA
GGAATCCCTT ACACCAGCCA TTTTAACTGC CTACAACTTG CAGTTTGAGC AGGTTGGCAT TGCTAATGCA GGCTATGATG
AGATTCATGA TGTTCATGGC TTGGTGGCAC CGAGAGGATT GTCAGGAGAT TCGCTCAAGA GGTTACCACA CCATATGATC
TCAAAGGATA TGAAGGCAGA AAATACTTGT ACAATATGTT TGCAGGATAT TGAAGTAGGC GAAATTGCAA GAAGCTTACC
TCGCTGTCAC CATACATTTC ACTTGATATG TGTGGACAAA TGGCTTGTCA AGAATGATTC CTGTCCTGTC TGTAGGCAGA
ATGTGTAA

>Vigan.01G458800.01
METEIIQGPW GFRSLPKFIL CTISGALTVC FAIAGAMTGA IAGALAAKAT RSGLLRGVSL GAIAGSILSV EVLEASRAYW
CMEQTGSRGA SSMADFIEEL VRGRLVEESL TPAILTAYNL QFEQVGIANA GYDEIHDVHG LVAPRGLSGD SLKRLPHHMI
SKDMKAENTC TICLQDIEVG EIARSLPRCH HTFHLICVDK WLVKNDSCPV CRQNV*