GBrowse Details

Vigan.01G457300.01

Basic Information:
Name: Vigan.01G457300.01
Multiple alignment
Variant Information
Position: Chr01:58726078..58729133 (+ strand)
Length: 3056
Functional Information:
Description: Similar to HNH endonuclease domain-containing family protein. [A9P7V3, Populus trichocarpa]
GO: Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: endonuclease activity (GO:0004519)
InterPro: HNH endonuclease (IPR002711)
HNH nuclease (IPR003615)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:77.02,110.14,14.62,18.49,29.98,15.21,39.96,13.20
Arabidopsis thaliana homolog: AT1G18680.1
Automatic updates:
Name: NM_001248511 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527904 (LOC100527904), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:58726078..58726157 (+ strand)
Length: 80
Type: five_prime_UTR
Position: Chr01:58726158..58726380 (+ strand)
Length: 223
Type: CDS
Position: Chr01:58726491..58726613 (+ strand)
Length: 123
Type: CDS
Position: Chr01:58728754..58728899 (+ strand)
Length: 146
Type: CDS
Position: Chr01:58728900..58729133 (+ strand)
Length: 234
Type: three_prime_UTR

>Vigan.01G457300.01 class=Sequence position=Chr01:58726078..58729133 (+ strand)
CAGAAATAAA AACATAGATC CTTCTTGTTC AGCTGTTGCT CCTTTTTCCC TGCTCCCTGT AGTGTAGAGC GAGGAGGAGG
ATGAGTTCTT CTCCGCCTCG TTCTCGTGGC GACGGCGAGA AAAGACCCAG GTTTTTCGAC TCAAACGCCA AGACCCTCTG
TTGGTCCAAG GCTGATATTG TCCCCGGCCG TCACCCTGAG AGGTGGCGCA AAGACGCCGC GGGTAACATT GTCTGCAAAC
GTTTCTACAA CTGCATCGGC TGCCTCTGCT ACGAGTACGA TCACATCATC CCCTTCTCCA AAGGTTTCAT TCTATTTTTA
GTCCATTCAT TTCTTCTTCT TCATTTCCGT AGTCTATTCT TGCTATTTGG TAATTTGATA TTTATCTAAT TGTCTCGTGA
TGTTGCGGTG TAGGTGGTGA GTCCACAGCA GATAATTGTC AAATACTTCA ATCAAGAGTT AACAGACTCA AATCGGACAA
ATATGACATT GATTCTAATC AATTGAAAGA CTACTCTTGT GAGGTTAATT TTACTGGTAT GCCTGCTTCT GTGTTTGTCT
ATCTCTGCAT TTCACTCTTT CTTTATCCTC TTATTATGCA TTTACCCATC CCTGGCTTGA GGAATTCCTT TATTCATCTT
TGTTCATCGT GGAGAAACAA ATGATAGAAT TATTTTTAGG TACTGAAAAT CACAATTCCT ATTTTCGAAC TCAGTCACCT
TAGTAAAGTT AGAACCTCAA TCCTCTTCAA CATACAACCC TAATTGTAGG TAATAGTTGT GATTCTTTCA ATTGTTGGCC
TTTTCAATTT ATAGCTTGCA TCATTGAAGA GTATCTGCAC AATTTTTTAA CGTGTCTTGG TTCCACGGAT TGGGATTTTC
TAAATGCTGT ACACATTCAT GTCCTTCAAT TTCATCACTA GAAGCTTTTG CCGGCACTTT TTGGACTCTA CACATTATGA
GTTATGGATT GCTTCACCTT TGTAAAAAAT AATGAAAGGG GTTAAATGAA ATTCTATTCA TGTCTTAGTT TCCTTTCATT
TTTTTTACGT GAATTTCTTA GTTCAGCCAA TGCTTCATTT TAATTGAATC AATTAAGAAT GTTTCGTTCT AGTTATCTTA
AATTAGTCAC CCTGATTCTG AAGATCTCCA AAATTAGTTG GCAATACATT TTTAGATTGA TCTTAAGTGG ATTGATTGGC
AGTCACTATC CTGGACTTAA TATTGTTATG GGTAGTTTAT TCACTGTATC CTGTTAAAAG AATTGTTGTT ACATTACACT
TAGGACCTTT TTTTGTTTGA TGATATTTAT TTGAAATAAT AGTAAAAAAT GAAGGGTTGT GAAAAGATAA AAGGGCGTGA
ATTAATATAA ATCAAGCAGT ATTATTTTAT GTAACTATCA GGTATCCGAA GGGTTCTTGA TATTGTGATT ATTTGGCGTG
TCTAGAATTC ATGTAATAGT TTTGGTTTAA TCTTATTATA AATAGAGTTC CTATCCATGC AGCTAGTATG CCAAATATAA
TATAATCTCC TTTATTTTCT AGTCTCCTAT CTATTTTTCT AACAGAGTGG TGTGAGAGCT TAGGCTTTGA TAATTGAGAG
ATACACTTAG TGAGTTGATA GATGACAAAC AAAATCTTGA ACTTGGTTCA AGTTGCTCAT TTACCAATGA GTTATGGCAA
TTGGTGCGGT CAGATGAGGC CCTGCTGGGG TATCAAGATG CTTGGGAGGT TGTAGATAAA TGTTATACCG AACAGGAAAT
TGAGAATACT TTGTCTCCAA ATGAGAGTGA GGCTTTGTTG AAGATAAAGA AGAAGGATCA GCAAACACTT ACCATTACCT
ATCAAGGTTT TGAGGACATC ATGTTTGAGA TGGTCTAATG CATTCACCCC AAGCAAGCTT GGGAGATTTT GAAAAACTCC
TTTGAAGACA AGGTAAAGGT GTGCCTACAA ATTCTTCATG GAGGGTTTGA ATCCTTACGA GTGAAGGAGA TGAATCAATT
TCTTATTTTA ACAATAAGGT GATAATGATT GTAAATCAAA TTATGAATTA TGGAGAGAAT GTGGAAGATG GCTGCGGGCG
GTATAGAAGA TTATTCATTC ATCTACCATA AAATTTGATG TTGTGGTTTG TGCAGTTGAA GGGTCAAAGG ACATTAGAAT
TGATGATCGT AGACCAATTG ATGGAATTGG TTAGACAAAT AACCAGTTGA AGGGTCAGTG GACATTCAAG TTTAAGAAAA
AAATTGATGA GGAAAAGGTG GAGGTAGTTC ATCTGAAGAC ACAATATTTC ATTTTCATTA AGCTCCTCAT GGTTAAAGAA
TTTACAAGAT TAAGAAATTG ACTTGGTATG CAGGAAATGT GTTAAGAATT TTCTAACTAA GGGGGATGCT GGAGATAAAA
GGGAGTGAGT TTACATGAAA AGTCTATAAT AACTAAAACC TACTCTAATA TAAAAAGAAA ATCAATCCAT CTTTTTCGTG
TCCCAAATGT AATAAAATCT CCTCTATTTT TCTAACAGAT CTAGGCCTGA TCAATTATTG ACATGTTCAT TGAAATTATA
CGTCTATTTC ACAATTACTT ATAGGTATAG TGTTCAAGTA AATTGTGTAG TGCTCAAATC TTTGCATAAT CAATCATGTT
TCTTAGCTCA ATATTCTACT TTTGATCAAT TAGCAGATAA GGAGCTTGAT ATAATTGAGA TGGCTGTTTA CGGGGATGTG
GTGCGGCCTG GAAATCAGTG TCGTTGCAGA ACTATTGCTG AGAAACTTGG CAAATTTAAA CCAAAAGATG ACAAAGATGC
TTGTAAGTTG CCACAGGGAT GAATCTTAAC TGTAGCCAGC GACTATACAA CATAAATAAT GTATTGAAAA CAGAAGCTCA
TGCCAAATAA GTTTTAGACA AAAAACAATT GTTTCACCTT ATATCATACC ATTTGGTCTA GCGTTAGGAT TGACATCTAG
ACCTAGTTGT TAACAATAAT TCTAGGTTTC TGACTTCTTT AAAGTAACCT CTAAAGTAAT AGGGAAAAAA AATATATTAT
CAATGACACA TTATAG

>Vigan.01G457300.01
CAGAAATAAA AACATAGATC CTTCTTGTTC AGCTGTTGCT CCTTTTTCCC TGCTCCCTGT AGTGTAGAGC GAGGAGGAGG
ATGAGTTCTT CTCCGCCTCG TTCTCGTGGC GACGGCGAGA AAAGACCCAG GTTTTTCGAC TCAAACGCCA AGACCCTCTG
TTGGTCCAAG GCTGATATTG TCCCCGGCCG TCACCCTGAG AGGTGGCGCA AAGACGCCGC GGGTAACATT GTCTGCAAAC
GTTTCTACAA CTGCATCGGC TGCCTCTGCT ACGAGTACGA TCACATCATC CCCTTCTCCA AAGGTGGTGA GTCCACAGCA
GATAATTGTC AAATACTTCA ATCAAGAGTT AACAGACTCA AATCGGACAA ATATGACATT GATTCTAATC AATTGAAAGA
CTACTCTTGT GAGGTTAATT TTACTGATAA GGAGCTTGAT ATAATTGAGA TGGCTGTTTA CGGGGATGTG GTGCGGCCTG
GAAATCAGTG TCGTTGCAGA ACTATTGCTG AGAAACTTGG CAAATTTAAA CCAAAAGATG ACAAAGATGC TTGTAAGTTG
CCACAGGGAT GAATCTTAAC TGTAGCCAGC GACTATACAA CATAAATAAT GTATTGAAAA CAGAAGCTCA TGCCAAATAA
GTTTTAGACA AAAAACAATT GTTTCACCTT ATATCATACC ATTTGGTCTA GCGTTAGGAT TGACATCTAG ACCTAGTTGT
TAACAATAAT TCTAGGTTTC TGACTTCTTT AAAGTAACCT CTAAAGTAAT AGGGAAAAAA AATATATTAT CAATGACACA
TTATAG

>Vigan.01G457300.01
ATGAGTTCTT CTCCGCCTCG TTCTCGTGGC GACGGCGAGA AAAGACCCAG GTTTTTCGAC TCAAACGCCA AGACCCTCTG
TTGGTCCAAG GCTGATATTG TCCCCGGCCG TCACCCTGAG AGGTGGCGCA AAGACGCCGC GGGTAACATT GTCTGCAAAC
GTTTCTACAA CTGCATCGGC TGCCTCTGCT ACGAGTACGA TCACATCATC CCCTTCTCCA AAGGTGGTGA GTCCACAGCA
GATAATTGTC AAATACTTCA ATCAAGAGTT AACAGACTCA AATCGGACAA ATATGACATT GATTCTAATC AATTGAAAGA
CTACTCTTGT GAGGTTAATT TTACTGATAA GGAGCTTGAT ATAATTGAGA TGGCTGTTTA CGGGGATGTG GTGCGGCCTG
GAAATCAGTG TCGTTGCAGA ACTATTGCTG AGAAACTTGG CAAATTTAAA CCAAAAGATG ACAAAGATGC TTGTAAGTTG
CCACAGGGAT GA

>Vigan.01G457300.01
MSSSPPRSRG DGEKRPRFFD SNAKTLCWSK ADIVPGRHPE RWRKDAAGNI VCKRFYNCIG CLCYEYDHII PFSKGGESTA
DNCQILQSRV NRLKSDKYDI DSNQLKDYSC EVNFTDKELD IIEMAVYGDV VRPGNQCRCR TIAEKLGKFK PKDDKDACKL
PQG*