GBrowse Details

Vigan.01G454400.01

Basic Information:
Name: Vigan.01G454400.01
Multiple alignment
Variant Information
Position: Chr01:58484143..58488370 (- strand)
Length: 4228
Functional Information:
Description: Similar to glucan endo-1,3-beta-glucosidase-like protein 3-like isoform X1. [XP_003527110.1, Glycine max]
InterPro: X8 (IPR012946)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.26,4.21,82.16,16.69,84.03,256.69,35.29,66.08
Automatic updates:
Name: NM_001249559 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500078 (LOC100500078), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001253095 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max glucan endo-1,3-beta-glucosidase-like protein 3-like (LOC100797001), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:58484143..58484741 (- strand)
Length: 599
Type: three_prime_UTR
Position: Chr01:58484742..58485027 (- strand)
Length: 286
Type: CDS
Position: Chr01:58487062..58487095 (- strand)
Length: 34
Type: CDS
Position: Chr01:58487210..58487446 (- strand)
Length: 237
Type: CDS
Position: Chr01:58487863..58487914 (- strand)
Length: 52
Type: CDS
Position: Chr01:58487915..58488370 (- strand)
Length: 456
Type: five_prime_UTR

>Vigan.01G454400.01 class=Sequence position=Chr01:58484143..58488370 (- strand)
GAAGATAAAC AGTGACACAC TCCCATAGGT GCCTTCTTCA GTGACTGCTT AGGCCTCCTC ACTCACTCAC CCCTGTTAGG
CTTTTACGAG TCCCTATGAA ACTATTTCCC TCCCTTGATA TAGGGTAAAG AAAAGAGGAG CGTGATTAGA AACACAACTA
TTATTTACAT TATTTTTAAC TACATTAAGT AGTAGTAGTA GTAGTGAGAC TGAAATTGCA AAAGTACAAA AAGCATTCAC
AAGCCGACAC GAAAAGAGGC CAACCATTAT CCCACCGTTT ACACATTACA CAACTTTACC ATCTCCTCTC TTCCCCTGTG
TTATATTTTG TCCTCATATT CTCATCTCAT CTCACACACT CTGTCACGCA CCCACCATTC TCCTTCCTCT CTCTCTGCTC
TACTACGTAT AATCCCCTTC TCACCACACC ATTGCTCTAC CTCATCGTCC CCTAACATGG CTGCTCTAGC TCTTACACTG
CTTCTTTTGG CTTTCACTGG CACTTCAAGT ATGCTTCACA CTCCTTTTTC TTCCTCTCTT CCTTCTCAAC CTCAAGCTTC
AAAGTTTCAC TTTTTTTTCC AGTTTAAACA CCCTTTCCGT ATTTTAACCA CTGGATCTAT GTCTCTCCTT TCTATTTTCT
CACAAAAATC TTCAAAGACC AAACTTTATC CTAGCTAGGG ACTTGCTCAG TCATGCAAGA GTGTTCCATT TCCACATTTC
TTAACACTTT TGATCTACTA AAATCTTACT TTGCTAGCGT AGATTTTTTG TTTTGACACT CCAAAATGAC TCCTGTCATT
TATACTTTTA TTCCTCCAGA CACTCATCAC CAAGCATAAA AACATTTTCT CTCCTAAATC TAAACCTTTT CTTCTTCTTT
CACACTCGTT GTCTATGCTC ACTGATGTGT TCAAACTGTT ACAGGTGCAA CTTGGTGCGT TTGTAAGGAT GGAGGCGACG
CGATCCTGCA GAAAACATTG GACTATGCTT GTGGAGCTGG TGCTGACTGT AACCCTCTCC ATCAAAACGG GCCTTGCTTC
CAGCCCAACA CTGTAAGGGC GCACTGCAAC TACGCCGTGA ATAGCTACTT CCAAAAGAAG GGTCAGGCTC AAGGGTCCTG
TGAGTTTGCA GGAACAGCCA CTGTTACTGC TACTGACCCC AGTAAATCCT CAATCTCTAT TTTCTTTTTC TTTTCTTAGT
ATATTTTCCT TTCAAAAGAA ACCACAGTAG CTGACCCTTT TACCTGTTTC TCCTTTTCTC CTTCTTGGTG AACAGGCACT
GGCGGTTGTG CCTACCCTTC AAGTGTCAGG TATGTATTTC TTCCACTATT ATGTTCTTCT TCATTCTCAA GCTCCCTATT
TGTTGTTCCT TTGATTTAAT ACGCTTTTTT TTTTTTTACC TTTTCTGCTT TATGTTTTAA CGTGGTTGTC TGATTTTGAA
GGATGACGGT GTTAACGTTT GATATTGAAC TTTCACTTTT TGTTTATCAT AATAAAAGGG TTAGCGCACT TGCTTAGATT
AGTATGGTAT TTTATCTATA AAAGAGTCAT TTGGGTTGCA ATAGGCATAT TCGCTGCGTG GTAGTGTACT AGTGTTTTTT
TAAGGTTTCA CACAATGCAC TCTTGCCATG GGATGAGAGA TTGATGAGGA TATTTCGGTC CTAAATACCG TTTCAAAGAC
ACCAATTAGG ATGAATTTTT AAAATAAAGT GACATTTATT CTTAAATTAA GATCAGATTT ATGTTGAAGG AAGGAATTTC
ATATTCGCTT TGAATGTTTT TTTACTGTTT TTTTATACTA AAGTAAAAGT ACTACACACC CGTGCTCACT TTTTTATCGT
AAAAAAGAGG AGAAAAGTTG AAATTCAAAT TTTGTCTTTT AATCAAGATA AAAGAAAATG TGAAAGTAGA TAGAAAAAAA
ACATAAATAA AAGAAACATT ACTCAGATTT TATTCAAGCA AACCCTACTT TTTGGAGTAT ATTTTTTTGT TAAAAATGAA
AACTAAGGAG TGTAGTTGAA GGCAAAAAAA AAGATGGGAA CTAAGGAAAT AAATTATTGG GTACAAGCAG AATAGGGTTT
ATAATCTTCA ATTCTGATTA TATATTCCTA ATTGAACGTT TGTTTTAATT TCTCCGTTCT ATTAATGTCG CTTTGACATG
TAGTTCTATC CAACGTGGAC GAACTGCTTT TTATTCATTT GGTTTTGACA TTATCGTAAT TTGATAATCT GGTCTTCATC
TCATTACCCA TTTGTCGATT ATTATAGCCG TTGAAGCGTG ACATTTAACT TTTGAAGTTA AATGAAAGAT GCTTCAATAA
TTGGGATCCG ATGCTCCAGT AAAGTTTAAA TCTTTTTGAA ATAAAAAATC TTGGACATTA TGATTATGAA ATGACAAGTT
TGTCCCAATT GGACGATCTT ATCCTTAGCT TTTTCGCTTT AGCACTTTGG AAATAAAAGA AGCAAGGAGA CAGAAATGCC
CTTGTTTATG TGTATAGTAA AAAGTTAGTG GAAGACAGTG TTCGGGTGGT TAACAGTGAG CACTGAGCAG AGTGAGAGTG
TTTTTGTTTC CATATTTCAT GATCAAGTTT GAATTTTTGA TGATGAATGA TGACGGTGAA ACAAACGCCA CATGGACAAC
ATCGTTTCGA GATCTGGGCC ATCAAACTTT TAGAAAAGTC GACATGTTTG TTTTCTGTGT ATGACCGTTC TTCCCACCCA
TCGCTTTCGA TAGTTTAACC CTCGTCTGTT TCTTTTTTAA CCTGGAAATT TGTGAAAAGC GAGCTTTTTT ATTGCTCTAA
ACAATACCAC TGACAATTTT ATACCACAGT CAATTTGGAT AACAGTCTTG GTACTTCCAT TATTGTCTGT CAACTGAAGG
GGAAAAAAGG ACGATTGTTT TAAGAAGCAA ATCTCACGGA AGATTTTATT CTTGAATGTT AACATTAAAA AACCATTATC
GTTCATGCCG GAGTCATTAT CAACTTAAAG AAAGTAGTTG GGAATTGAGA ATGAGCATGA AAGGAGAATT TAATGGCCAT
AAAAAAACCG GTTTATTGAG GTGAAGAAAG GGTATGATTT TGAGTGTCTA GATTTGGAGT GCAAACTAAT TGGTTGCTGG
GATACATGTT CTGTTACCTA TTTGTATGTG TATGTGTATG ATTTCGTTTA GTTTTATTAA CCCTTATAAA TTGTAAAACT
TGATTACTTA TCATGTATAG ACAAGATTAA CCAAGATCAT GAATATGTAA TGGTCCTAGA TCTTACTATT GTGTTTTTTT
GTTTCTGTTG TTTTGAGACA CAGCATGTGG GGTGAGCATT GATTCCTTTG TTTGTCTTAT CAGTGCTGCA GGCACTGGTA
CAACTCCTGT CACAACTACA CCAACCATGG GCACCACTCC CACCACTGGA ACCCCATCAA CCGGTACCGG TACCGGCACC
GGCACTGGAA CCACCACTGG TACTACTCCA TACAGCACAA CACCCGGAGT ATTAGGAGGC ATTGGCAGTG GCATGGGACC
TTCAGGATCC GGCATGAATG ATGAGAGTCA CGGTGGCCTT AGACTAGTGC ACTCTAGCTT CTTCTTCATC TCTCTCTTCT
CTTCCTTCAT GATCTTCTGC TGGGGCTGAG AATGTATGAG CAAAATGCTC AATGTCACTG TATTATTGTG AATGTTATTT
TTCTAGGTGT TGAACTTGGG GACGTTGCAT TTTGGGCTCT TGAAATATCT TTCTCCACCT TCCACTAGCT ATTGGCTTTT
TGATTTATTA ATTATTGAAT TTGGCAACAC TTCACCTCTA CTTTTTCTTT CTTAGCCTCC TCCTACTCTG TACCAAAAAG
TACACAACGT AATCTGTGAA AGGGGTTTTC TGGTTTTTCA AAGAAGTGGA ATGATATATA AGCCATGTCA ATTAACCAAA
CAAAGCATGC TCTGTCCATT TCAATTTCAA ACTTAGTTTT TGATTGACTA TGGTCTTGTT GTAGTCAAAC AGTGTGGTCC
TTGTAATTGA AATGTTGAGC TGTATACTGC TGAAAGAGAA AGCACGACAA CATATGGCAG CATTAGGGTA GTATTGAGCA
TGAAAAATCT ATCACATGGA AAACCATTTT TGAATTGGTG TTATTTTTAA AACACAACGT ATGGGCTGTT ACCTGATTCA
CTTGATTGCT TAAATAATAT GGTGTTTGTC TTCCCAATGT ATTATTTATT TGTCCATTTT GTGCAAGG

>Vigan.01G454400.01
GAAGATAAAC AGTGACACAC TCCCATAGGT GCCTTCTTCA GTGACTGCTT AGGCCTCCTC ACTCACTCAC CCCTGTTAGG
CTTTTACGAG TCCCTATGAA ACTATTTCCC TCCCTTGATA TAGGGTAAAG AAAAGAGGAG CGTGATTAGA AACACAACTA
TTATTTACAT TATTTTTAAC TACATTAAGT AGTAGTAGTA GTAGTGAGAC TGAAATTGCA AAAGTACAAA AAGCATTCAC
AAGCCGACAC GAAAAGAGGC CAACCATTAT CCCACCGTTT ACACATTACA CAACTTTACC ATCTCCTCTC TTCCCCTGTG
TTATATTTTG TCCTCATATT CTCATCTCAT CTCACACACT CTGTCACGCA CCCACCATTC TCCTTCCTCT CTCTCTGCTC
TACTACGTAT AATCCCCTTC TCACCACACC ATTGCTCTAC CTCATCGTCC CCTAACATGG CTGCTCTAGC TCTTACACTG
CTTCTTTTGG CTTTCACTGG CACTTCAAGT GCAACTTGGT GCGTTTGTAA GGATGGAGGC GACGCGATCC TGCAGAAAAC
ATTGGACTAT GCTTGTGGAG CTGGTGCTGA CTGTAACCCT CTCCATCAAA ACGGGCCTTG CTTCCAGCCC AACACTGTAA
GGGCGCACTG CAACTACGCC GTGAATAGCT ACTTCCAAAA GAAGGGTCAG GCTCAAGGGT CCTGTGAGTT TGCAGGAACA
GCCACTGTTA CTGCTACTGA CCCCAGCACT GGCGGTTGTG CCTACCCTTC AAGTGTCAGT GCTGCAGGCA CTGGTACAAC
TCCTGTCACA ACTACACCAA CCATGGGCAC CACTCCCACC ACTGGAACCC CATCAACCGG TACCGGTACC GGCACCGGCA
CTGGAACCAC CACTGGTACT ACTCCATACA GCACAACACC CGGAGTATTA GGAGGCATTG GCAGTGGCAT GGGACCTTCA
GGATCCGGCA TGAATGATGA GAGTCACGGT GGCCTTAGAC TAGTGCACTC TAGCTTCTTC TTCATCTCTC TCTTCTCTTC
CTTCATGATC TTCTGCTGGG GCTGAGAATG TATGAGCAAA ATGCTCAATG TCACTGTATT ATTGTGAATG TTATTTTTCT
AGGTGTTGAA CTTGGGGACG TTGCATTTTG GGCTCTTGAA ATATCTTTCT CCACCTTCCA CTAGCTATTG GCTTTTTGAT
TTATTAATTA TTGAATTTGG CAACACTTCA CCTCTACTTT TTCTTTCTTA GCCTCCTCCT ACTCTGTACC AAAAAGTACA
CAACGTAATC TGTGAAAGGG GTTTTCTGGT TTTTCAAAGA AGTGGAATGA TATATAAGCC ATGTCAATTA ACCAAACAAA
GCATGCTCTG TCCATTTCAA TTTCAAACTT AGTTTTTGAT TGACTATGGT CTTGTTGTAG TCAAACAGTG TGGTCCTTGT
AATTGAAATG TTGAGCTGTA TACTGCTGAA AGAGAAAGCA CGACAACATA TGGCAGCATT AGGGTAGTAT TGAGCATGAA
AAATCTATCA CATGGAAAAC CATTTTTGAA TTGGTGTTAT TTTTAAAACA CAACGTATGG GCTGTTACCT GATTCACTTG
ATTGCTTAAA TAATATGGTG TTTGTCTTCC CAATGTATTA TTTATTTGTC CATTTTGTGC AAGG

>Vigan.01G454400.01
ATGGCTGCTC TAGCTCTTAC ACTGCTTCTT TTGGCTTTCA CTGGCACTTC AAGTGCAACT TGGTGCGTTT GTAAGGATGG
AGGCGACGCG ATCCTGCAGA AAACATTGGA CTATGCTTGT GGAGCTGGTG CTGACTGTAA CCCTCTCCAT CAAAACGGGC
CTTGCTTCCA GCCCAACACT GTAAGGGCGC ACTGCAACTA CGCCGTGAAT AGCTACTTCC AAAAGAAGGG TCAGGCTCAA
GGGTCCTGTG AGTTTGCAGG AACAGCCACT GTTACTGCTA CTGACCCCAG CACTGGCGGT TGTGCCTACC CTTCAAGTGT
CAGTGCTGCA GGCACTGGTA CAACTCCTGT CACAACTACA CCAACCATGG GCACCACTCC CACCACTGGA ACCCCATCAA
CCGGTACCGG TACCGGCACC GGCACTGGAA CCACCACTGG TACTACTCCA TACAGCACAA CACCCGGAGT ATTAGGAGGC
ATTGGCAGTG GCATGGGACC TTCAGGATCC GGCATGAATG ATGAGAGTCA CGGTGGCCTT AGACTAGTGC ACTCTAGCTT
CTTCTTCATC TCTCTCTTCT CTTCCTTCAT GATCTTCTGC TGGGGCTGA

>Vigan.01G454400.01
MAALALTLLL LAFTGTSSAT WCVCKDGGDA ILQKTLDYAC GAGADCNPLH QNGPCFQPNT VRAHCNYAVN SYFQKKGQAQ
GSCEFAGTAT VTATDPSTGG CAYPSSVSAA GTGTTPVTTT PTMGTTPTTG TPSTGTGTGT GTGTTTGTTP YSTTPGVLGG
IGSGMGPSGS GMNDESHGGL RLVHSSFFFI SLFSSFMIFC WG*