GBrowse Details

Vigan.01G448800.01

Basic Information:
Name: Vigan.01G448800.01
Multiple alignment
Variant Information
Position: Chr01:57978495..57982214 (+ strand)
Length: 3720
Functional Information:
Description: Similar to Emb|CAB62636.1. [Q9FN50, Arabidopsis thaliana]
InterPro: Protein of unknown function DUF3353 (IPR021788)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:23.77,16.37,28.55,61.01,25.89,22.66,19.21,20.36
Arabidopsis thaliana homolog: AT5G23040.1
Automatic updates:
Name: NM_001255642 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cell growth defect factor 1-like protein (LOC100806315), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:57978495..57978737 (+ strand)
Length: 243
Type: five_prime_UTR
Position: Chr01:57978738..57978796 (+ strand)
Length: 59
Type: CDS
Position: Chr01:57978945..57979015 (+ strand)
Length: 71
Type: CDS
Position: Chr01:57980175..57980557 (+ strand)
Length: 383
Type: CDS
Position: Chr01:57981647..57981723 (+ strand)
Length: 77
Type: CDS
Position: Chr01:57981820..57981970 (+ strand)
Length: 151
Type: CDS
Position: Chr01:57981971..57982214 (+ strand)
Length: 244
Type: three_prime_UTR

>Vigan.01G448800.01 class=Sequence position=Chr01:57978495..57982214 (+ strand)
ACTTAACGTA TCATATTTTA AACAAGATGG TACCCTAGCA GGAAGTGGTT CACAATAGAA GACAAAAGTA ATCAGTTATC
TTCTTACTCT TCTTGTTCTT CTTCTCAGTG CCAGAACCTA AAGAAGAACA CGTTCCATTT CCCCTTTGCT TTTCCAATTT
TCCACCTACC ATGCTATTCA ACTAGGGTTA GGACGTAGGG CGTTCTTAAT TTTTTCGCTC TGTTAATTAC AAAGAAGGCC
GACATGGTTG TGCTTTCGCT CTCAGCTCCC AACCTCTCTA CCGCTTTTCT CGCTAAGAAA TTGTACCTCT TTCTCTCTTT
GGTTTCCTTT GCGTTTTGAT TGATTGCCTT TAGTTTTCAG ATTAATCGAC CTCTTATTTT ATTTTATATT GATGGTTTCG
GATTCGTCTA TCATTGCTCG TGCATAAATC GTGAATTTGG GTTTCTTCAG GTATCTCCGA GAACACGCGA AGAAGCTTAC
GGCCTTTCGC ACTAAATGCA CGGTGGACAC GCCCTACGGA GGTATCACCT AAAACCTGTC AAATTTATTC ATTTAATTAC
ACAACAAAAC TTCCAACCCT ATCAATTATA TAAAATAAAT TCCTCGAAAT GTTTTATTAT TGATACAGTC ATGAGGCGGT
GAAGTTGCTT TATAGTTAAG GTTTCGCTAC TGTGCACATT AATGCGTACT TGTTTATTTC TTGGCTTGTT TGGGCTTCAA
TTCAGTTGTG TCTAGCCTTG ATTTTTAGTC CTGCTCAGGC TTCTGATTTT TTAGCTCAAG CTTAGTTCCC TTTTGTGTAT
AAGTTGATGG AAAATCCAAG CTGGGCTTTG TTTTGCTTTG TTTTGGGACA TGGGAATTTA GATGAATTCT ATTCCTATTT
AAAGGACCTC CAATAGTAAG TCACCTTCTG CACCTACCCT CCCCTTCAGA TTTTCCCTTT CAATATATTA ATTATTTAAA
TATATGGAAT TTTTAGCAAT GTTACCTGAA CTATTTAGAT GTATCATTAC TTTTTTTTTC TGACTAAAAT CATGCTGAGA
GTTAAAGAAA GTAACGAGGA TCCTTGTTAT TTGATCTTGC AAAAGTACAA GATAAGCTAT ACTATACGAC TCTATAGAAA
CAATCACGGA AAACTTTATC TCTAAAGGTT AAGATGAGAC CCAACAGACG TGAATTAAAC AAAGTTTTCC AGCAAGGAGG
CTGTCGGTTG ATCAACCAAA AGAATAAACA ATGCAGTTTC ATTGTCTATG AAATTTTGTG GGAGGTCACC TGTCACTCTG
TCAAGAGGTG CTTGGTCTTG TTTAGATGGA GTGAGACATA TAGGTATGAG TCTCCAGTGA GACTTATTTA ATTGGCAGCA
TTATGTTCCT GTCTTGAGAG ATATCTTTTG TACCTAGTAA CAAACTTTTG GCTACAGAAT TTGATCTCAA GAACAACATG
CCTTTTTTAA TTTCTGGTGC TATTTCTTAT TATCTTGCTA GTTGAGTGAT CTCAAAAAGC CTGTCAACTT CTATATCATT
GGCTATTGCC TGACAGCTGA AGTTTAACTG ACTTAGATCA TGATTCATAT TAATTTGTAA AGTCTGCATT TATGCTCTTA
GTTGCTTTTC TCTGTCTATT ATTTTCCACC TTATGAGTTA ACTATTGATA TGTGAATTTA TATATAATTC TTATATGCAG
GTAATGTCCA GAAATTCCCT CGAATCAATG TTTGGGATCC TTACCGTCGT CTTGGTATTA GCCCTGATGC TTCTGAAGAA
GAAATTTGGG GATCAAGAAA TTTTTTGTTG CAACAATATG CTGGGCATGA GAGGAGTGAA GAATCAATTG AAGCGGCTTT
TGAAAAATTA TTGATGGCAA GTTTCATACA GAGGAGGAAA ACAAAAATTA ATTTGAAAAG CAAGTTAAAA AAGAAAGTAG
AAGAGTCTCC ACCATGGGTG AAGAACTTGC TAAACTTTGT TGAACTTCCA CCGCCTGAAA TCATCCTCAG AAGATTGTTT
CTCTTTGCCT TCATGGGTGG CTGGAGTATT ATGAATTCCG CCGAAACTGG ACCTGCTTTT CAGGTTTGCT TTGAATTTCT
TTTTTTTTTT TCTCTTTCCT CTTCTGTTTG GTGTATACCT AAATGCATTT TTTAGAATAA AACTGTATTT TTTTCAGGAA
GAAAAACTTT ATAGATTTCA TTTTCTATAA ATATTTGGAG AGTGACGCCC CTAGATTTTA AAAAAGAAAA CCGAATTATA
TATTCATTTA GTCCTTACCT TCCGAGCCAT TTAGCATATG TGTATCTGTC CTTATCCACA CTGCTGGAAA TGAAGTCAAC
TACCATTCTC TAGATTGTAG CCTCGCTTCA AAGGCTATAC TTGAGTGGTG CCTGACTATT ACTTACGGTT CCATAGAAAT
TTCCGATCAT TGTGACTATC GGATTTTCAG GTTACCGTGT TCAGTACTTT AACCATAAAC CATGATTTTA ATCCAATTTT
CTCCTTGGCC ATTCTCTTTT TTAAGGTTTT CAGTATTTTA ATAAAATGTT AATATTGTCT TGTTTTCCAA GAGCATTTCC
CATGTAAGGG TCTTATAGGA AGGAAATTTT CATAGATCAT GCTGATGTTA CATGGTCAGA GTCTTGTCTT AAAGTTAAGA
CTCTGACCAT GTATAAGACC TTCAGTCTTT AAGTATAAAA GGTAACTTTT AACATCAGCC TCTTTGAAAC ACCAACATTA
AATTAATATT TAGTTATAAT AATTAAATTA ATTTTTTTAA GTTAAAACAT TGAAGTGCAA ATAAAAAATT ATAAAAGTGT
GGGTCTTTTA CAAGACCTCA CTATTAGAAC AAGATTTCAA AGAGTAGCTT AGAAATGACT TGGTATGATG AGACCCACTT
AATGTAAAAT AAGATCTCAT GAGAGTTTCT TATAAGACCC TTACATGGTT GATGCTCAAT GGTCACTTTG GGTTCCTCCA
ACTCTAAGTA GATTCGGGCG GGCAGTAATG CTCTCCTCTT TATGTGCATA CATACTCACT CAAAGGACTT GAACTTGAGA
TTTTACATAA GGGGAACCTG GTTCCCTTCT ACTTGGATCA ATTGACTTTG GTAATATTAC CTTTGTCAAT GCATGTCTAC
TTATTGACAG AACTATCGTA TTGCTTCTAC AGGTGGCGAT CTCTTTGGCT GCTTGCATAT ATTTTCTTAA CGAAAAGACA
AAGAGCTTGG GGAGAGCATT CATTATTGGG TAAGTGACTA GAGTATCCAG CTTATATTTT CCCGCTGATT TTTTTATCCT
ATTTGCCATC ACCGTCTACA TTGTTTTGTT TTTGCACTAT GATAGATTTG GAGCTCTGGT GGCTGGATGG GTATCTGGTT
CAGTGCTGGT ACCCAATATT CCAGCTGTGT TGCTGCGCCC AACTTGGACA CTTGAACTCC TAACGTCATT GGTAGTTTAT
ACATTCTTGT TCGTTGCTTG TACTTTTCTC AAGTGAAGTA GAGCATCAAT TCTTTCAACG TTTTATTAGG AGATGAGTTT
ATAGGCGATC GAGCTGCACT TTTGTTTAGC GAGCTTAAAT GTTTACTGTC TTATACTTTA TCAAAACAAC TTTCTGAATT
GGGAATGGTC AGCGTAATTA TTTCAAAATA AGTTCATCTT AATCATTATT TTTTTATCTA TCACATATTG CAGCTGTTTA
ATAAATATTG AAATTGTAAT GATTATTTCC TTTTGAAGTA 

>Vigan.01G448800.01
ACTTAACGTA TCATATTTTA AACAAGATGG TACCCTAGCA GGAAGTGGTT CACAATAGAA GACAAAAGTA ATCAGTTATC
TTCTTACTCT TCTTGTTCTT CTTCTCAGTG CCAGAACCTA AAGAAGAACA CGTTCCATTT CCCCTTTGCT TTTCCAATTT
TCCACCTACC ATGCTATTCA ACTAGGGTTA GGACGTAGGG CGTTCTTAAT TTTTTCGCTC TGTTAATTAC AAAGAAGGCC
GACATGGTTG TGCTTTCGCT CTCAGCTCCC AACCTCTCTA CCGCTTTTCT CGCTAAGAAA TTGTATCTCC GAGAACACGC
GAAGAAGCTT ACGGCCTTTC GCACTAAATG CACGGTGGAC ACGCCCTACG GAGGTAATGT CCAGAAATTC CCTCGAATCA
ATGTTTGGGA TCCTTACCGT CGTCTTGGTA TTAGCCCTGA TGCTTCTGAA GAAGAAATTT GGGGATCAAG AAATTTTTTG
TTGCAACAAT ATGCTGGGCA TGAGAGGAGT GAAGAATCAA TTGAAGCGGC TTTTGAAAAA TTATTGATGG CAAGTTTCAT
ACAGAGGAGG AAAACAAAAA TTAATTTGAA AAGCAAGTTA AAAAAGAAAG TAGAAGAGTC TCCACCATGG GTGAAGAACT
TGCTAAACTT TGTTGAACTT CCACCGCCTG AAATCATCCT CAGAAGATTG TTTCTCTTTG CCTTCATGGG TGGCTGGAGT
ATTATGAATT CCGCCGAAAC TGGACCTGCT TTTCAGGTGG CGATCTCTTT GGCTGCTTGC ATATATTTTC TTAACGAAAA
GACAAAGAGC TTGGGGAGAG CATTCATTAT TGGATTTGGA GCTCTGGTGG CTGGATGGGT ATCTGGTTCA GTGCTGGTAC
CCAATATTCC AGCTGTGTTG CTGCGCCCAA CTTGGACACT TGAACTCCTA ACGTCATTGG TAGTTTATAC ATTCTTGTTC
GTTGCTTGTA CTTTTCTCAA GTGAAGTAGA GCATCAATTC TTTCAACGTT TTATTAGGAG ATGAGTTTAT AGGCGATCGA
GCTGCACTTT TGTTTAGCGA GCTTAAATGT TTACTGTCTT ATACTTTATC AAAACAACTT TCTGAATTGG GAATGGTCAG
CGTAATTATT TCAAAATAAG TTCATCTTAA TCATTATTTT TTTATCTATC ACATATTGCA GCTGTTTAAT AAATATTGAA
ATTGTAATGA TTATTTCCTT TTGAAGTA

>Vigan.01G448800.01
ATGGTTGTGC TTTCGCTCTC AGCTCCCAAC CTCTCTACCG CTTTTCTCGC TAAGAAATTG TATCTCCGAG AACACGCGAA
GAAGCTTACG GCCTTTCGCA CTAAATGCAC GGTGGACACG CCCTACGGAG GTAATGTCCA GAAATTCCCT CGAATCAATG
TTTGGGATCC TTACCGTCGT CTTGGTATTA GCCCTGATGC TTCTGAAGAA GAAATTTGGG GATCAAGAAA TTTTTTGTTG
CAACAATATG CTGGGCATGA GAGGAGTGAA GAATCAATTG AAGCGGCTTT TGAAAAATTA TTGATGGCAA GTTTCATACA
GAGGAGGAAA ACAAAAATTA ATTTGAAAAG CAAGTTAAAA AAGAAAGTAG AAGAGTCTCC ACCATGGGTG AAGAACTTGC
TAAACTTTGT TGAACTTCCA CCGCCTGAAA TCATCCTCAG AAGATTGTTT CTCTTTGCCT TCATGGGTGG CTGGAGTATT
ATGAATTCCG CCGAAACTGG ACCTGCTTTT CAGGTGGCGA TCTCTTTGGC TGCTTGCATA TATTTTCTTA ACGAAAAGAC
AAAGAGCTTG GGGAGAGCAT TCATTATTGG ATTTGGAGCT CTGGTGGCTG GATGGGTATC TGGTTCAGTG CTGGTACCCA
ATATTCCAGC TGTGTTGCTG CGCCCAACTT GGACACTTGA ACTCCTAACG TCATTGGTAG TTTATACATT CTTGTTCGTT
GCTTGTACTT TTCTCAAGTG A

>Vigan.01G448800.01
MVVLSLSAPN LSTAFLAKKL YLREHAKKLT AFRTKCTVDT PYGGNVQKFP RINVWDPYRR LGISPDASEE EIWGSRNFLL
QQYAGHERSE ESIEAAFEKL LMASFIQRRK TKINLKSKLK KKVEESPPWV KNLLNFVELP PPEIILRRLF LFAFMGGWSI
MNSAETGPAF QVAISLAACI YFLNEKTKSL GRAFIIGFGA LVAGWVSGSV LVPNIPAVLL RPTWTLELLT SLVVYTFLFV
ACTFLK*