GBrowse Details

Vigan.01G441900.01

Basic Information:
Name: Vigan.01G441900.01
Multiple alignment
Variant Information
Position: Chr01:57484263..57489071 (- strand)
Length: 4809
Functional Information:
Description: Similar to Uncharacterized protein. [I1K1B6, Glycine max]
GO: Biological Process: fatty acid biosynthetic process (GO:0006633)
Molecular Function: thiolester hydrolase activity (GO:0016790)
InterPro: Acyl-ACP thioesterase (IPR002864)
Acyl-ACP-thioesterase, N-terminal (IPR021113)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.32,10.10,28.65,19.57,22.95,40.32,16.97,23.33
Arabidopsis thaliana homolog: AT1G08510.1
Automatic updates:
Name: NM_001250873 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max acyl-ACP thioesterase (FAT1), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001267071 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max myristoyl-acyl carrier protein thioesterase, chloroplastic-like (FATB1B), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:57484263..57484945 (- strand)
Length: 683
Type: three_prime_UTR
Position: Chr01:57484946..57485215 (- strand)
Length: 270
Type: CDS
Position: Chr01:57485751..57485819 (- strand)
Length: 69
Type: CDS
Position: Chr01:57485915..57486086 (- strand)
Length: 172
Type: CDS
Position: Chr01:57486439..57486552 (- strand)
Length: 114
Type: CDS
Position: Chr01:57486873..57487006 (- strand)
Length: 134
Type: CDS
Position: Chr01:57487181..57487672 (- strand)
Length: 492
Type: CDS
Position: Chr01:57487673..57489071 (- strand)
Length: 1399
Type: five_prime_UTR

>Vigan.01G441900.01 class=Sequence position=Chr01:57484263..57489071 (- strand)
CAGCACACAA CAACACACTA TTCTCTCTTT TCTCCAATTC TTTTCTTTTT CAAATTTAGG GAAAACGCCA AATTACGCAA
TAGCCCTTCT TCTCTTCTAT TCTTCTTTCT CCTTCTTCTT CTTCTTTCTT GAAGCCTTCT CTCTCTCTTT CTCTCTCTCT
CTCTCTTCTT TTCCTTCCTC TGCTTCACTC GCGGACGCGC AAATCTGCTA TTTCAATCCT CTTTCTCTCT GATCTACGTG
TCCACGAACT GCACCTCCAC GCCCCACTCA ATCCATCTTA TCGTTTTCAT TCTTCTCAAC CTTCGGAGAT CCAACCGCCA
GATAATACAC AAAATCCCGC CTTTTCTACG TTTCTACACT CTCAACACAA GGTTCTCGGT TTTTTCCTTT AACCTTATTA
TTACTCGTCT TTTCAAAAAA GTAATGCGAG CTTCGTGCGT ACTATTTCTT GTTCTCAATT TCCAGCCACT GGACTGGATT
GCATTGGTGT CCGCTTTCCG CTTTATTTTT TGCACTTTGC CATTTTTGTT TTAATTTTGG AAGCGGTTTC AGCCTCCGCA
TCGTTTCTGC ATTTTTGGGT TAGCGGTGTT TTGAGGATTC CGAGTCAGAT CTGCACCGGT TTATCCGACG AATTTGTTCT
TGTTCGTTAT TCTTTGGTTC ATTGACTTGT TTCGCTTCTG GAATCTCTCA CGTGCTAAAA TACGCGTGTT ATTTTAGTTG
AAATAGAACT GTGAACATTG TAGTTATATT TTTAACGATC ACTTATGCAA GTGCTTTCGA TTACTTTTTT CAGTGGTTAT
AATCCTTTAT GTGCTTTGAT TCTTTCTGAT AAAAGCTTGA TTCAATTTTT AGTAAATGGA TTATTTTCTC TTTCGTTTGG
TCACTTTGCA AAATGAGACT CGCGACTGGC TGGAGTTGCT GGTTCAAGTT CAAATGAGAT AAATATAAAG GGTTGAGGCA
TGAAAAAGAG AATTCTATAG ATCTGTTCTG AAATTGGAGC TGCTGTATGG AGTTGCTATT TTTTTTAATA AATAATTTTA
GGAACAAGTT TGCTTTTGCC AAAATTGTTT GTTACCACTC GCCTCTTTTT GTCATATAAA TGCTGTTATT ATTTGTTGTA
TGGGTTGAAC TGTAATTTTT GGGTGAACTC GGGTATTTTT TTCAGTCAAA CCAGACTAAT ATTTCGAGAT ACTGAAATTT
ATTGAAGTGG TTAGCCTCTT CCATATGTCT GTCGTTGATA CTCCGTTATT TTATATCATA TCATTCATAT TGTTTGCCTC
TTTGCTTGTT TATCTGTCAT CCCCATTCGG TGGGAGGAGA TGGAAGAGAA TATATATGCA TGTTTTGCTT TTTCTTTCTA
ACTTTATTAA ACTTTTGCAT GCAGCAGTAG AAATTCATTA TGGTGGCAAC TGCAGCTACT TCATCAATTT TTCCTGTTCC
TTCTCCCTCC CCGGACTCTG GCGGAGCAGG CAACAAGCTT GTTGGTGGGC AAGCCAACCT TGGAGGACTA AAGTCCAAAC
TTGTGACTTC TGGTGGCTTG AAGGCAAAGG CACAAGCCCC TTCGAAAATT AATGGAAGCA CAGTTGCTAC ATCTGTAGAA
AGCTTGAAGC TTGAGGATGA TTTACCTTCA CCTCCCCCTA GGACTTTTAT CAATCAGTTA CCTGATTGGA GCATGCTTCT
TGCTGCCATC ACGACAATTT TCTTAGCAGC TGAAAAGCAG TGGATGATGC TTGATTGGAA ACCAAGGCGA CCTGACATGC
TTATTGATCC CTTTGGGATA GGAAGAATTG TTCAGGATGG TCTTGTCTTC CGTGAAAACT TTTCTATCAG ATCATATGAG
ATTGGTGCTG ATCGAACAGC ATCTATAGAA ACAGTAATGA ACCATTTGCA GGTAAGGTCG CTCTCATACC AATTATTTCT
TTTAATCTTC AGATATGAAT ATGTTATAAT TAAGATAGGG TTGTATATTT ATTCACTGTG CATAATTGAA ACTCAAATGT
AGATAATATA ATTTTTCTTT TAAATATTTT TCATTCTAGA ATTATCTCAA CTAGTTGTTT AACAGGAAAC TGCACTGAAT
CATGTTAAGA GTGCTGGCCT TCTTGGTGAT GGATTTGGTT CTACTCCAGA AATGTGCAAA AAGAACTTGA TATGGGTAGT
CACTCGTATG CAGGTTGTGG TTGATCGCTA TCCTACCTGG TATGTCACCC AGATTCACAT ATGCGATTTT GAATGTATCC
ATGCTAAAGC TATTTGTGTC TCTTTTAGTT AATCTTTATA AGAAATTATC ACTATAAATA CAGTCATGGT ATTTAAACAC
GAGCTTTTAT ACCAAATGTA CTGTGGGAAG CCTTATGTGG TATATTGTTG TTGATTTATT TTTGAGAACT AGATGTATAA
AGTACGCAGT TATTTTGGCT TCTTGGCGGC TGGGTTGCAG TTAGATAAGC TATTAGTGAG TATTATTATG GTTGTTCTCA
ATCTAATCAT CTGAAGTTGG GTGTCAAAAT TTGCTTCAGG GGTGACATCG TTCAAGTAGA CACGTGGGTT TCTGGGTCTG
GGAAGAATGG TATGCGTCGT GATTGGGTTT TACGTGACTG CAAAACTGGT GAAATCCTGA CTAGAGCCTC CAGGTAGAAA
TCATTTTCCC CTTCCTTCTG CTTCCAGCTA ATTTAAAGAT GTGTATCTGA ATGTGCATGA CTGGTGATTG GCACAATTTT
GGATCTTTCA AACTCCTTAC AAAAGTTATG GAAAACCAAT CTTCTCTTTT TTTCTTTTTT TTTTCCTGAT TAAGTCAAAT
TTGTCACAGC TGAAATTTGA GGTAATCGAT GAGTGTATTT TGCAGGTGAA AACCTCTAAT TGAACAAACA TAACTTTTTA
TCTTAGTTTA TTATTAAGTA TCATGTGTAC GCATTCATCC CCTAGAGTTT GTAGTTAGCA TCATATATTT TCTGAACAGT
TTGTTACGGT TTTGGTGGTC TACAGCGTTT GGGTCATGAT GAATAAGCTG ACGAGAAGGC TGTCTAAAAT TCCAGAAGAA
GTCAGAGAGG AGATAGGATC TTACTTTGTG GATTCTGATC CAATTCTGGA AGAGGATAGC AGAAAACTGA CTAAACTTGA
TGACAACACA GCAGATTATA TTCGTACTGG TTTAAGTGTA TGTCAACTAG TTTATTTGTG ATCGCTGTCA TTAGCTATTT
TCTCTAATTA TTTCATATGT TCTTTTCTAA TCAATTGACA AAACGTATTC AGCCTAGATG GAGTGACCTT GATGTCAACC
AGCATGTCAA CAATGTGAAG TATATTGGCT GGATTCTGGA GGTAGTTTTT TACACTTGCA TTCTAAAAAA CTTCAATTCT
TGTTTCCTGT TTTGTCTCTT CAATTCTTCG TTGGGAACAT TCTATTGTAG CACAAGCTTG GAAAGACCAT GCGAAATTCA
GGGTAGAATT ATTAATAAAA ATTGTCATCT GATTAGAATC AGGCCAATTG CAGGTTACGA TAGTCAGACA CCCAGTTGCC
CTGTGGGTGA ACCCTACTCT AGTCTATCTA ATCAATTGAT TGTTTGTGAA GTGAGTGTGT TTGGGAGGGA ATTTGGTATC
AGATTATGGG TACTTTCCTG GTTCATGGAA ATTATTGATA CGATATTAAT TTGTGGGCCA CGGAGGAGCA AAGTGTGGTG
GCGGCTTGAA AATAATGTGA TATAATTGGG CAATAGGGGT GATATTTATG TAAAGGACTT ATATTCTCCT GTATTAGTTA
TTGCTGGTTG ATTTATTCTT GGAGATATAG CCTGGTAAGT TAAATTTATT TTTTGTTATG CTTCTTGACC AAAGAAAGGA
CATTTGATTC TTGCAGAGTG CTCCACAGCC AATCTTGGAG AGTCATGAGC TTTCTTCGAT GACTTTAGAG TACAGAAGGG
AGTGTGGTAG GGACAGTGTG CTGGATTCCC TGACCGCTGT ATCTGGTGCC AACATTGGCA ATCTGGCTGA CAGCGGACAT
GTTGAGTGCA AACACCTGCT TCGACTTGAA AATGGTGCTG AGATTGTGAG GGGTAGGACT GAGTGGAGGC CCAAACCTGT
GAACAACTTT GGTTTCATGA ACGAGGTTCC AGCAGAAAGC ACCTAAGATT TTGAAATGGT TAACGTTCGG AGTTGCATCA
GTCTCCCTGC TATGGTTACC TGGAGAGTTT TGCATCAGAC TGTCCGATCT ACATGTCTTC ATATATATAT ATAGATACCT
TCTAATCTGT GTTACTCTGG TGGGTAAGGG GAAAAGCAGT AGTAAATCTG ATTCTCATTG TAATTAGCTA CTGCTCTTCT
CTCTCTTTCT GCTCCATATT TCATTTCATC TCTTAATGCG CTACTGCTAG GCTGTCTTCA ATATTTAATT GCTTGTTAAA
AATAGCTAGA TATGTATATT ATTATTCTTT TTCTCTTGGT TGAATTAAAG ATGCAATTTT CTTTTTCCTT GTGAACACGA
AACCATTATT ATTATTATGA TTATTATTAT TTCTGTATAG CCTGAATGCA AGAATGCATG CTCCAGCTTG TATTATGCCA
ACTTCCCACA TGGGAATTAT TGAATGCAAA ACATCTCTTC TACTCGAAGA CTTTTAAAAT AATTTGTACT TAATATCTTA
CGTTGATGTG TGTGGGCCTA TGCATTTGCT GTCCTACGTA TTTGCGTAGT CCACATTTTG TTGGGACCCT ATAATTGGGC
TCACTACTAC TGCCTCTTGG AACTTTCACT TTTCTATGTT TCGATTTCTC TCTTCTTTTA TCTATGCAAA ATGTTTTATT
TTCTGTCCA

>Vigan.01G441900.01
CAGCACACAA CAACACACTA TTCTCTCTTT TCTCCAATTC TTTTCTTTTT CAAATTTAGG GAAAACGCCA AATTACGCAA
TAGCCCTTCT TCTCTTCTAT TCTTCTTTCT CCTTCTTCTT CTTCTTTCTT GAAGCCTTCT CTCTCTCTTT CTCTCTCTCT
CTCTCTTCTT TTCCTTCCTC TGCTTCACTC GCGGACGCGC AAATCTGCTA TTTCAATCCT CTTTCTCTCT GATCTACGTG
TCCACGAACT GCACCTCCAC GCCCCACTCA ATCCATCTTA TCGTTTTCAT TCTTCTCAAC CTTCGGAGAT CCAACCGCCA
GATAATACAC AAAATCCCGC CTTTTCTACG TTTCTACACT CTCAACACAA GGTTCTCGGT TTTTTCCTTT AACCTTATTA
TTACTCGTCT TTTCAAAAAA GTAATGCGAG CTTCGTGCGT ACTATTTCTT GTTCTCAATT TCCAGCCACT GGACTGGATT
GCATTGGTGT CCGCTTTCCG CTTTATTTTT TGCACTTTGC CATTTTTGTT TTAATTTTGG AAGCGGTTTC AGCCTCCGCA
TCGTTTCTGC ATTTTTGGGT TAGCGGTGTT TTGAGGATTC CGAGTCAGAT CTGCACCGGT TTATCCGACG AATTTGTTCT
TGTTCGTTAT TCTTTGGTTC ATTGACTTGT TTCGCTTCTG GAATCTCTCA CGTGCTAAAA TACGCGTGTT ATTTTAGTTG
AAATAGAACT GTGAACATTG TAGTTATATT TTTAACGATC ACTTATGCAA GTGCTTTCGA TTACTTTTTT CAGTGGTTAT
AATCCTTTAT GTGCTTTGAT TCTTTCTGAT AAAAGCTTGA TTCAATTTTT AGTAAATGGA TTATTTTCTC TTTCGTTTGG
TCACTTTGCA AAATGAGACT CGCGACTGGC TGGAGTTGCT GGTTCAAGTT CAAATGAGAT AAATATAAAG GGTTGAGGCA
TGAAAAAGAG AATTCTATAG ATCTGTTCTG AAATTGGAGC TGCTGTATGG AGTTGCTATT TTTTTTAATA AATAATTTTA
GGAACAAGTT TGCTTTTGCC AAAATTGTTT GTTACCACTC GCCTCTTTTT GTCATATAAA TGCTGTTATT ATTTGTTGTA
TGGGTTGAAC TGTAATTTTT GGGTGAACTC GGGTATTTTT TTCAGTCAAA CCAGACTAAT ATTTCGAGAT ACTGAAATTT
ATTGAAGTGG TTAGCCTCTT CCATATGTCT GTCGTTGATA CTCCGTTATT TTATATCATA TCATTCATAT TGTTTGCCTC
TTTGCTTGTT TATCTGTCAT CCCCATTCGG TGGGAGGAGA TGGAAGAGAA TATATATGCA TGTTTTGCTT TTTCTTTCTA
ACTTTATTAA ACTTTTGCAT GCAGCAGTAG AAATTCATTA TGGTGGCAAC TGCAGCTACT TCATCAATTT TTCCTGTTCC
TTCTCCCTCC CCGGACTCTG GCGGAGCAGG CAACAAGCTT GTTGGTGGGC AAGCCAACCT TGGAGGACTA AAGTCCAAAC
TTGTGACTTC TGGTGGCTTG AAGGCAAAGG CACAAGCCCC TTCGAAAATT AATGGAAGCA CAGTTGCTAC ATCTGTAGAA
AGCTTGAAGC TTGAGGATGA TTTACCTTCA CCTCCCCCTA GGACTTTTAT CAATCAGTTA CCTGATTGGA GCATGCTTCT
TGCTGCCATC ACGACAATTT TCTTAGCAGC TGAAAAGCAG TGGATGATGC TTGATTGGAA ACCAAGGCGA CCTGACATGC
TTATTGATCC CTTTGGGATA GGAAGAATTG TTCAGGATGG TCTTGTCTTC CGTGAAAACT TTTCTATCAG ATCATATGAG
ATTGGTGCTG ATCGAACAGC ATCTATAGAA ACAGTAATGA ACCATTTGCA GGAAACTGCA CTGAATCATG TTAAGAGTGC
TGGCCTTCTT GGTGATGGAT TTGGTTCTAC TCCAGAAATG TGCAAAAAGA ACTTGATATG GGTAGTCACT CGTATGCAGG
TTGTGGTTGA TCGCTATCCT ACCTGGGGTG ACATCGTTCA AGTAGACACG TGGGTTTCTG GGTCTGGGAA GAATGGTATG
CGTCGTGATT GGGTTTTACG TGACTGCAAA ACTGGTGAAA TCCTGACTAG AGCCTCCAGC GTTTGGGTCA TGATGAATAA
GCTGACGAGA AGGCTGTCTA AAATTCCAGA AGAAGTCAGA GAGGAGATAG GATCTTACTT TGTGGATTCT GATCCAATTC
TGGAAGAGGA TAGCAGAAAA CTGACTAAAC TTGATGACAA CACAGCAGAT TATATTCGTA CTGGTTTAAG TCCTAGATGG
AGTGACCTTG ATGTCAACCA GCATGTCAAC AATGTGAAGT ATATTGGCTG GATTCTGGAG AGTGCTCCAC AGCCAATCTT
GGAGAGTCAT GAGCTTTCTT CGATGACTTT AGAGTACAGA AGGGAGTGTG GTAGGGACAG TGTGCTGGAT TCCCTGACCG
CTGTATCTGG TGCCAACATT GGCAATCTGG CTGACAGCGG ACATGTTGAG TGCAAACACC TGCTTCGACT TGAAAATGGT
GCTGAGATTG TGAGGGGTAG GACTGAGTGG AGGCCCAAAC CTGTGAACAA CTTTGGTTTC ATGAACGAGG TTCCAGCAGA
AAGCACCTAA GATTTTGAAA TGGTTAACGT TCGGAGTTGC ATCAGTCTCC CTGCTATGGT TACCTGGAGA GTTTTGCATC
AGACTGTCCG ATCTACATGT CTTCATATAT ATATATAGAT ACCTTCTAAT CTGTGTTACT CTGGTGGGTA AGGGGAAAAG
CAGTAGTAAA TCTGATTCTC ATTGTAATTA GCTACTGCTC TTCTCTCTCT TTCTGCTCCA TATTTCATTT CATCTCTTAA
TGCGCTACTG CTAGGCTGTC TTCAATATTT AATTGCTTGT TAAAAATAGC TAGATATGTA TATTATTATT CTTTTTCTCT
TGGTTGAATT AAAGATGCAA TTTTCTTTTT CCTTGTGAAC ACGAAACCAT TATTATTATT ATGATTATTA TTATTTCTGT
ATAGCCTGAA TGCAAGAATG CATGCTCCAG CTTGTATTAT GCCAACTTCC CACATGGGAA TTATTGAATG CAAAACATCT
CTTCTACTCG AAGACTTTTA AAATAATTTG TACTTAATAT CTTACGTTGA TGTGTGTGGG CCTATGCATT TGCTGTCCTA
CGTATTTGCG TAGTCCACAT TTTGTTGGGA CCCTATAATT GGGCTCACTA CTACTGCCTC TTGGAACTTT CACTTTTCTA
TGTTTCGATT TCTCTCTTCT TTTATCTATG CAAAATGTTT TATTTTCTGT CCA

>Vigan.01G441900.01
ATGGTGGCAA CTGCAGCTAC TTCATCAATT TTTCCTGTTC CTTCTCCCTC CCCGGACTCT GGCGGAGCAG GCAACAAGCT
TGTTGGTGGG CAAGCCAACC TTGGAGGACT AAAGTCCAAA CTTGTGACTT CTGGTGGCTT GAAGGCAAAG GCACAAGCCC
CTTCGAAAAT TAATGGAAGC ACAGTTGCTA CATCTGTAGA AAGCTTGAAG CTTGAGGATG ATTTACCTTC ACCTCCCCCT
AGGACTTTTA TCAATCAGTT ACCTGATTGG AGCATGCTTC TTGCTGCCAT CACGACAATT TTCTTAGCAG CTGAAAAGCA
GTGGATGATG CTTGATTGGA AACCAAGGCG ACCTGACATG CTTATTGATC CCTTTGGGAT AGGAAGAATT GTTCAGGATG
GTCTTGTCTT CCGTGAAAAC TTTTCTATCA GATCATATGA GATTGGTGCT GATCGAACAG CATCTATAGA AACAGTAATG
AACCATTTGC AGGAAACTGC ACTGAATCAT GTTAAGAGTG CTGGCCTTCT TGGTGATGGA TTTGGTTCTA CTCCAGAAAT
GTGCAAAAAG AACTTGATAT GGGTAGTCAC TCGTATGCAG GTTGTGGTTG ATCGCTATCC TACCTGGGGT GACATCGTTC
AAGTAGACAC GTGGGTTTCT GGGTCTGGGA AGAATGGTAT GCGTCGTGAT TGGGTTTTAC GTGACTGCAA AACTGGTGAA
ATCCTGACTA GAGCCTCCAG CGTTTGGGTC ATGATGAATA AGCTGACGAG AAGGCTGTCT AAAATTCCAG AAGAAGTCAG
AGAGGAGATA GGATCTTACT TTGTGGATTC TGATCCAATT CTGGAAGAGG ATAGCAGAAA ACTGACTAAA CTTGATGACA
ACACAGCAGA TTATATTCGT ACTGGTTTAA GTCCTAGATG GAGTGACCTT GATGTCAACC AGCATGTCAA CAATGTGAAG
TATATTGGCT GGATTCTGGA GAGTGCTCCA CAGCCAATCT TGGAGAGTCA TGAGCTTTCT TCGATGACTT TAGAGTACAG
AAGGGAGTGT GGTAGGGACA GTGTGCTGGA TTCCCTGACC GCTGTATCTG GTGCCAACAT TGGCAATCTG GCTGACAGCG
GACATGTTGA GTGCAAACAC CTGCTTCGAC TTGAAAATGG TGCTGAGATT GTGAGGGGTA GGACTGAGTG GAGGCCCAAA
CCTGTGAACA ACTTTGGTTT CATGAACGAG GTTCCAGCAG AAAGCACCTA A

>Vigan.01G441900.01
MVATAATSSI FPVPSPSPDS GGAGNKLVGG QANLGGLKSK LVTSGGLKAK AQAPSKINGS TVATSVESLK LEDDLPSPPP
RTFINQLPDW SMLLAAITTI FLAAEKQWMM LDWKPRRPDM LIDPFGIGRI VQDGLVFREN FSIRSYEIGA DRTASIETVM
NHLQETALNH VKSAGLLGDG FGSTPEMCKK NLIWVVTRMQ VVVDRYPTWG DIVQVDTWVS GSGKNGMRRD WVLRDCKTGE
ILTRASSVWV MMNKLTRRLS KIPEEVREEI GSYFVDSDPI LEEDSRKLTK LDDNTADYIR TGLSPRWSDL DVNQHVNNVK
YIGWILESAP QPILESHELS SMTLEYRREC GRDSVLDSLT AVSGANIGNL ADSGHVECKH LLRLENGAEI VRGRTEWRPK
PVNNFGFMNE VPAEST*