GBrowse Details

Vigan.01G438200.01

Basic Information:
Name: Vigan.01G438200.01
Multiple alignment
Variant Information
Position: Chr01:57081593..57086283 (+ strand)
Length: 4691
Functional Information:
Description: Similar to deSI-like protein At4g17486-like isoform X3. [XP_004508533.1, Cicer arietinum]
InterPro: PPPDE putative peptidase domain (IPR008580)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.81,2.02,11.53,9.47,12.88,7.05,15.90,13.74
Automatic updates:
Name: NM_001254456 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max UPF0326 protein At4g17486-like (LOC100778961), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:57081593..57081955 (+ strand)
Length: 363
Type: five_prime_UTR
Position: Chr01:57081956..57082121 (+ strand)
Length: 166
Type: CDS
Position: Chr01:57084620..57084907 (+ strand)
Length: 288
Type: CDS
Position: Chr01:57085475..57085555 (+ strand)
Length: 81
Type: CDS
Position: Chr01:57085684..57085823 (+ strand)
Length: 140
Type: CDS
Position: Chr01:57085824..57086283 (+ strand)
Length: 460
Type: three_prime_UTR

>Vigan.01G438200.01 class=Sequence position=Chr01:57081593..57086283 (+ strand)
CTGGTCTTGT GCAGAGCAAC AGACAGGGAA TAAAATTGAG AAAAAGGGAA GGGTGGAACT CGACAGAGAA AAAAAAAGGA
GTTGTCTCAA CCCAACAATA GCAGAGAGAG CCAAACACGT CTTTTGACTA AAAAGTAACT AACCGCTTAT CTCAATCAAC
TCGAAGTCTA ATGTTTTCAT AAGATTGGTT GCTTCAGCGT GGTATGTCGT GGACATGGAT CTGTGTTGTG TGATTTCTTC
TTCTCGCTCC ATGTCCATGG AATGAGTGTT TCCATTTGTA ACTACTTTCC TCTTTTGGTA ATTTCGATTG TAAGGTTGTC
CTGTTTGTGC TGGGTTCGGT AATTTTCAGA TTGCTGCTAC AATATGGGTG TGGAGAATGC CTCGAAGTCC ATTTCCACCT
CACAATGCGA TGACCAACTT AGTAACAGCA AAATCAACAC ACTCGTGCGA TTGAATGTCT ACGATCTCAC CCCTGTCAAT
AATTACGTCT ACTGGGTTGG ATTTGGCATA TTTCATTCTG GCGTTGAAGG TCTCTCTCTG TCTCTCTCTC TGTTTCCTTG
AACTTTTTTA ACTAGCTTTT ATGCGTATAC CAGATCTAAT TTAGCAGTTT TTTATTTCAA TTTTTCTATC TTTGTATTGC
TTTGAGAAGG CTCCTAATTC ACGATTCTGT GATATCATGT ATGTTTTCCT TGAGTGCTTA TTTGTAACTT TTCTCCATAA
ATTGAGAGAG CGGAGAGACG AGTATAACCT TGAGTTACTG AATAGTAATT TGTGATTAAC AACACCTTAC CAGCTTGTGG
CTTCTCAGAT ATTGAATTGG AGAGCGAACT TCATAAGAGT GAAAAACAAA CATGTCAATT AAATGGTTAT AAACTAAACT
CAGTAAGGTA AGTTGAGGTA AATTTTTTAA TGGGATAAGA GATAAAGAAA TTTTTTCAGA TAATTAGTTA ATATATAAGT
TAAAACATCA TCTTTTAGAT AATCAATATA AGCGCCATAC TGTGAGGGAA ACTAGTCCTA ATCCAAAGGG TAAAAGATAT
ACTTAGTAAG ACAAAGAACA AACTGAGTAG TTTAAAAGTG AGAAGGTGTT TTTATGATTT ATAGTTCTGC ATCCTTTCTA
CTGGTAAACT GGTAATTTAT TTTCCACCAT AAACATTTTT ACAATCAAGT TATTGCAGTT ACGATTCTCT TACTTCCAAG
TTAACTCTTA TATTCTTACT ATTTTAAATA GAGAAAATAA GTTATCTTCA TTGGAAAACT CTTTTCTAGT TAGACTAGTG
ACAGTGTTTT GGAATTACAT ATAATTTTTG CCGCACAAAC TCTAGGTTCC AGTACCAAGG TACCAAGTTC CAAATCACAT
AATTTTTGCC TCACTCTAAC TCCATGGTCA CAATGTTTTT AATTAAGGGC TCAAAATGAT TTGAAAAGAT TAGCTAGATT
TTGAAATGTT TTCACTTTAC TAACTTATGT TTTTATGAAT TTATAAATGA TTACGACATT TATATAATTT GATCTCTCTT
AGTTCTATTA CATTATTAAA TCTTATTATT GCTCTTTGCT ACTTGACTTT ATTATAAAGT TGAAACACTG TATTATTTTT
GTGTTAAGAG TATTATGCTG TTCATTCAAG TCATTAATAG ATTTTTAGTA TTTTTTTATT TAAGTAAATA AAAATTCAGT
CTATAAAAAC TCTACAAATT TCCTTAAACT ATACAGTTTA ACCTTACAAT AGTGTGGCAG CCAACCTATA CGCTTTTTTT
TCCCTAAAAA AAACAAAGGA ACCTCTTACG GTTCGGGGAT TCCTAGATTC AAGCTTCCCA AGTATTTCAC ACACCGACAG
CAACAATCAT AAATAATCCA GATTACATGT CTGGAATGTG AAAGACGAAT GACGTTATGA TGTTCCATGA TGACTTCGAA
TTCAGAAACA CTATCAACAG TATTTGTTGT ACAATATCCA AGAGGGTGGT TGGCTGGAGT AAGGCTAACA AGTGAGAGAG
AACTGAAACA TCTATTGAAG TTAGAATAGC TCAAATGCAG CTCAATTTCT TTGATCTTAT GCTTACTGTG GCAGATTTTG
TATATTCAGA AAGCCTCTAG TCTGTTGAAG ATAATTGAAT GATTAGAATC CCATTAACAG CCGCCTTCCA ACTTATCTTT
TCATAGTTGT CTTAAAAGAT TTCCCTTAAG TGTCAAACTC CTTACTCTGT TTTAAACATT TATATTTTGC AATCTTCATG
TTTGGCTCTC CTAATCCACC TTATTGCTTC TAAAGACTAT GTATTCTAAA ATGTATTTTA CCGTTTACAA GTGTGTGTTT
GGTACGCTAC TCTAGAAATG TAGAATTATG ACTAATAGGC CTGTCGACCA ACTTATAAGC TGGTTTGTCG AAAATCAGTT
TGTAGATCAG GAAAGTTCCA TGAATTAAGG GATTCTATAG TGGAATGGAG AAATTTTATT TCCTAAAATA GAATAGAACT
CCTCTTATGT ACAGGTTGTG TGATTATTCG GAGTTAATGC AATGGAATCC AATCGTTCTT CCCTAATTTT TCAGAAATAG
AAGTTACAAT CTCACTGTCA AATGTAAGCT AACGTGGACA CATCTTCAGT TGCAATACAG ACCTTGCTAT CATCAAAATC
ATTACATCTT ATTAATTTTT GGATATGTTG TATGTTGTGT GTATACGAGG TTTCATGCTT CTAGAAGTGG ATTTCCTGGT
TGATTGAGAA TCTGTATTCA ATAAAATAAA TAAAAAGAAA ATTAGCATAT TTAAACTTAC TCATTTTTAT CCTTTTGATA
CACTACTTTA TTAATAGCTT CTGAGTTCTA AACATTTCAT TTTTGTATGA TTGTTTGGCA ACAATCATAA TTTTGTCAGA
ATTGTTCTGA AGATACCCCA GAAGAAGTGT TTCGTGATTT ATGCTGATGA GTTTCCTGCT GTTGTAACTC TTGTTTTAAT
TTGTATATCT AATGCTCTAA TCTAGTGAAG TTTTTTGTCT TGCTTTATTT CTTTTATTTT GAAACAGTGC ATGGTAAGGA
GTATGGTTTT GGAGCCCATG ATTTCCCAGC TAGTGGAGTT TTTGAAGTGG AGCCAAGGAA GTGCCCTGGA TTCATATATA
GATGTTCCAT CACTTTGGGT CAAACTAATA TGAGTGCTTC TGACTTTCGT ACATTTATTG AAAACATGGC TTCTGAGTAT
CATGGAGATA CCTATCACCT TATAACTAAG AACTGCAATC ATTTTACAGA AGATCTCTCC AATAGATTGA CTGGGAAACA
AATCCCAGGT TGGGTGAATC GGCTTGCTAA GCTAGGTAAA ACCGTACTAG GAAATTCCTT GTAAGCTTAT TTTTTACACT
TTGATGCGTG ATTATCTTTT TACTTCCATA GTTCTTTCTG ATCTCTTTTC ATCTCTTCAG GGAGACACTT GTAACATCAT
GCTCCTATCA ACCCCACCCG TCAGTTACAA AGTTTAGGGC CATTATAGGG CTCACATATT TCTGAAAACA TACTTGAACT
AGACAAGGAG AGAAAATACT GTCTTCAAAC ATCAAGTTAT AGTCTCTATT ATGAATGACA AAATATTAGA ACCTTCAAGT
TGTCTAAAAT ATAATCTGAC AATGATATCA TGTTTTGCCG ATGTATAAAT TTTAAACTTC ATCAGTTTTT TTCAAGTTAT
TCTTGGCAAT GAAAAGTACT TTGAAAATAT CAAACATCAG TTGCTTTTAG CTGGATAACA CCATTTGTAA TGTCATCAAC
AGAGACTAAC AATCGGACGC ATTGATTTTC TCTTCTAGTT CTGTTCTATA CATTTTATGT CATTTTAGTC CTAAAATACA
ATGAGCATAG TCCTAATGTC CATCCTCTGG TAAAAATTGT AGGTGCTTTA TGCAGTTGTC TACTTCCTGA AAGTCTTCAA
GTAACAAGTG TTAAACAGCT ACCTGAATAC CATGAATGCT CAGGTGTGTG TATCTCTTGT TCTTTCTTTT TTCCCAGTCA
ACATGTATTA CAGATGATGC ATATACTAAA TTTCCATCTT GCTAATAATA TCTGCAACCT TTTTTCCTGT CTGTCTTTCG
AATGTTTGCA GAAGATGAAT TTGTTGAATC TCTTTCACCT GCCACACCCC GCGAGTCCAC AGAAATAGAT GAGGAGCAAG
AAAAGCACCT TCTTTCATCA TCAACTGTAA CTGAGGATGT TACTTTCGTT AGAGAAAGCC AAGCAAAATA ATTGGTATCT
TTGACGTTAG AAGTTACACT TCGCTTTGAA ATTTATCCAT TTGTTTGCAG TGATTATTTT TTCTAAATTT TCTCAATCAT
CCATGGGTTT GGGTTCATTG AAACTGGAGA ATCCAGTATT TGTTGTGTAC AAAAGATTTT CGAACGGGGC CTATTTGTTT
GATTTTTTTT TTAGGGGTGG AAAGTGGGGC GAGGTTTGAG GCTTAATATT TTGTCATGTT TGAAACTGTC TGTAAGCTAT
GGAATATTAG TCATTTTGTT TGACAACATG GTACAAAAAA CATCTTCCAG TTGGAGGATG AGGGTTTAAT GTTGTTTTTC
TTATGAGGTT CATATCCTGC ACAAAAAGTA AAAGATGAAA TGACCACTGT AAGCATGGTT GAATAAAAAT GCCGTGCGCT
TTCGACATGA TTGACATGAT CTAATGTGAT AGAAATACTT ATTGTGATTT A

>Vigan.01G438200.01
CTGGTCTTGT GCAGAGCAAC AGACAGGGAA TAAAATTGAG AAAAAGGGAA GGGTGGAACT CGACAGAGAA AAAAAAAGGA
GTTGTCTCAA CCCAACAATA GCAGAGAGAG CCAAACACGT CTTTTGACTA AAAAGTAACT AACCGCTTAT CTCAATCAAC
TCGAAGTCTA ATGTTTTCAT AAGATTGGTT GCTTCAGCGT GGTATGTCGT GGACATGGAT CTGTGTTGTG TGATTTCTTC
TTCTCGCTCC ATGTCCATGG AATGAGTGTT TCCATTTGTA ACTACTTTCC TCTTTTGGTA ATTTCGATTG TAAGGTTGTC
CTGTTTGTGC TGGGTTCGGT AATTTTCAGA TTGCTGCTAC AATATGGGTG TGGAGAATGC CTCGAAGTCC ATTTCCACCT
CACAATGCGA TGACCAACTT AGTAACAGCA AAATCAACAC ACTCGTGCGA TTGAATGTCT ACGATCTCAC CCCTGTCAAT
AATTACGTCT ACTGGGTTGG ATTTGGCATA TTTCATTCTG GCGTTGAAGT GCATGGTAAG GAGTATGGTT TTGGAGCCCA
TGATTTCCCA GCTAGTGGAG TTTTTGAAGT GGAGCCAAGG AAGTGCCCTG GATTCATATA TAGATGTTCC ATCACTTTGG
GTCAAACTAA TATGAGTGCT TCTGACTTTC GTACATTTAT TGAAAACATG GCTTCTGAGT ATCATGGAGA TACCTATCAC
CTTATAACTA AGAACTGCAA TCATTTTACA GAAGATCTCT CCAATAGATT GACTGGGAAA CAAATCCCAG GTTGGGTGAA
TCGGCTTGCT AAGCTAGGTG CTTTATGCAG TTGTCTACTT CCTGAAAGTC TTCAAGTAAC AAGTGTTAAA CAGCTACCTG
AATACCATGA ATGCTCAGAA GATGAATTTG TTGAATCTCT TTCACCTGCC ACACCCCGCG AGTCCACAGA AATAGATGAG
GAGCAAGAAA AGCACCTTCT TTCATCATCA ACTGTAACTG AGGATGTTAC TTTCGTTAGA GAAAGCCAAG CAAAATAATT
GGTATCTTTG ACGTTAGAAG TTACACTTCG CTTTGAAATT TATCCATTTG TTTGCAGTGA TTATTTTTTC TAAATTTTCT
CAATCATCCA TGGGTTTGGG TTCATTGAAA CTGGAGAATC CAGTATTTGT TGTGTACAAA AGATTTTCGA ACGGGGCCTA
TTTGTTTGAT TTTTTTTTTA GGGGTGGAAA GTGGGGCGAG GTTTGAGGCT TAATATTTTG TCATGTTTGA AACTGTCTGT
AAGCTATGGA ATATTAGTCA TTTTGTTTGA CAACATGGTA CAAAAAACAT CTTCCAGTTG GAGGATGAGG GTTTAATGTT
GTTTTTCTTA TGAGGTTCAT ATCCTGCACA AAAAGTAAAA GATGAAATGA CCACTGTAAG CATGGTTGAA TAAAAATGCC
GTGCGCTTTC GACATGATTG ACATGATCTA ATGTGATAGA AATACTTATT GTGATTTA

>Vigan.01G438200.01
ATGGGTGTGG AGAATGCCTC GAAGTCCATT TCCACCTCAC AATGCGATGA CCAACTTAGT AACAGCAAAA TCAACACACT
CGTGCGATTG AATGTCTACG ATCTCACCCC TGTCAATAAT TACGTCTACT GGGTTGGATT TGGCATATTT CATTCTGGCG
TTGAAGTGCA TGGTAAGGAG TATGGTTTTG GAGCCCATGA TTTCCCAGCT AGTGGAGTTT TTGAAGTGGA GCCAAGGAAG
TGCCCTGGAT TCATATATAG ATGTTCCATC ACTTTGGGTC AAACTAATAT GAGTGCTTCT GACTTTCGTA CATTTATTGA
AAACATGGCT TCTGAGTATC ATGGAGATAC CTATCACCTT ATAACTAAGA ACTGCAATCA TTTTACAGAA GATCTCTCCA
ATAGATTGAC TGGGAAACAA ATCCCAGGTT GGGTGAATCG GCTTGCTAAG CTAGGTGCTT TATGCAGTTG TCTACTTCCT
GAAAGTCTTC AAGTAACAAG TGTTAAACAG CTACCTGAAT ACCATGAATG CTCAGAAGAT GAATTTGTTG AATCTCTTTC
ACCTGCCACA CCCCGCGAGT CCACAGAAAT AGATGAGGAG CAAGAAAAGC ACCTTCTTTC ATCATCAACT GTAACTGAGG
ATGTTACTTT CGTTAGAGAA AGCCAAGCAA AATAA

>Vigan.01G438200.01
MGVENASKSI STSQCDDQLS NSKINTLVRL NVYDLTPVNN YVYWVGFGIF HSGVEVHGKE YGFGAHDFPA SGVFEVEPRK
CPGFIYRCSI TLGQTNMSAS DFRTFIENMA SEYHGDTYHL ITKNCNHFTE DLSNRLTGKQ IPGWVNRLAK LGALCSCLLP
ESLQVTSVKQ LPEYHECSED EFVESLSPAT PRESTEIDEE QEKHLLSSST VTEDVTFVRE SQAK*