GBrowse Details

Vigan.01G434100.01

Basic Information:
Name: Vigan.01G434100.01
Multiple alignment
Variant Information
Position: Chr01:56811166..56814071 (+ strand)
Length: 2906
Functional Information:
Description: Similar to Uncharacterized protein. [I1LZY0, Glycine max]
InterPro: SPX, N-terminal (IPR004331)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:25.24,29.63,7.77,10.89,3.08,9.88,2.28,6.81
Arabidopsis thaliana homolog: AT2G26660.1
Automatic updates:
Name: JN201529 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max SPX domain-containing protein 2 mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Name: NM_001353556 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max SPX family protein SPX7 (GMSPX7), mRNA.
PubMed ID: 25074550 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:56811166..56811531 (+ strand)
Length: 366
Type: five_prime_UTR
Position: Chr01:56811532..56811813 (+ strand)
Length: 282
Type: CDS
Position: Chr01:56812334..56812460 (+ strand)
Length: 127
Type: CDS
Position: Chr01:56813333..56813781 (+ strand)
Length: 449
Type: CDS
Position: Chr01:56813782..56814071 (+ strand)
Length: 290
Type: three_prime_UTR

>Vigan.01G434100.01 class=Sequence position=Chr01:56811166..56814071 (+ strand)
GTGGAGTTAA TCTAACACTT TGAGTTTTTG AAAAAGAAAG AAAATCCAAA TGCAGAGGTT GGTAGGTAGC AGAGGGCGAC
AACACATGAC AAAAATCACT CCTCTCTCCT TCCTTCCTAT ACACCGAACA AGCTGCACAG TACACTACAG TACAACGTAG
AAGTAGTGTG GTAAGTTTGA AGAGAAAGAA ATAAAGGAAT AAAACCCCAA ATATACTGTT TTTACGGATA TTCCAACAAT
ACCCTCGAAT ATTCCTCCCT CCAACCGTTA TATCTATCAC CGCTTCATCC TCTATTTCCT CTCCTCGCTT CCTTTCTCCT
TACCAAAATT AAATTCCTCT TTCCAACGTT TTCCTAACAG AAAGCCATGA AATTCGGAAA GAGTCTCAGC AGCCAGATCG
AGAAAACCCT GCCGGAGTGG CGCGACAAGT TCCTCTCCTA CAAGGAGCTT AAGAAGAAGC TTAAACAATT TGACCCTCCT
GCTGCCGCCG ATGACCGTCC CGGAAAACGC CACAAGTCTG ATTCTGCAGC CACTTCCGCC GACATGTCCA AGGAGGAGAC
CGACTTCCGC AACTTGCTCG AGAGTGAACT CGACAAATTC AACACCTTCT TCGTTGAGAA GGAGGAAGAG TACATTATCA
GACTCAAGGT ACTCTCCTTG ATTCCTCTCT TTCCGTCTCC TCTCCTCTTT GGCTGTTGCG TGGAAGATCT GTTTCTTTTT
TGGATTTCTT AGTTTTTTTT TTCTATTCAA TGCTAAATAG CTAAATACTA AACTTCCAGG AATTTTTTTT TTTGCTTTTT
AGTTTTTGCC TGGAGGAGTT TGACATTATT ATTGGCTTTG GAACAAATTT TGATATTTTT CTCGGAATTC TGTTAGCATT
TGGTTTTGTT ATTGTGGAGT TTAATATTAA TTAGTGAAGA AACTTGTAGA TTCACAAGCT GTGAACATGG ATGGATGACG
TTGAGATTAA AAGAAATTCG GGGTTTTTAT TAGGCAATAT GGTGAAGATT CTTATTGCAG TTTGGCAATG CTAATTTGTC
TTGTTTTTCT TCTGCACAAT ATTCTGTATG ACCTTTTAAT TTTTATTTGG GCTGGTGCAG GGTGATTTAT ATGATAAAAC
AGTTAGATAA TCGGAAGCTC TAATGTTTGT TATCGTTGAA ATATACAGGA GTTACAAGAT AGGGTGGTCA AAGTTAAGGA
TTTTAGTGAA GAGATGATGA AAATCCGCAA GGAAATTGTG GATTTCCATG GAGAGATGGT CTTGCTGGAA AACTACAGTG
CCCTGAACTA TACAGGTACT TTTAACTTTC ATATGTATTG TTATATTTGC TTATTTTTCT TTATTGTTAT TGAAATCTGG
ATTCTTTACA TTTTAAAACT TTGCCCAAGT TCTTCGTAGC GTTACGGAAC TTCTAAGTAC TGTGTGAAAA ATCAAGTAAT
AAGATGGAAT AGGATTCGTT TCCAATACAA GTTGTCCATT GCTCCAAAAA TAGTTATTTT TAGACTTATA GGCACTTATA
TAAGTACAAA GGATGGGATG GAATATGATT CGTTTCCCAT ACATATTGTC CATTGCTCCT CAAAATTCCT TGGCCAAGTT
GGTAGGACAA AGCATATGTT TTTTCTTGGA ATAAATAATC TACTTTGAAC ACGTTCATGT TTCTGAAATT GGACATCTGG
CCCTTTTATT TTATAACCCT ATAATCAGGC TTACTATTCT TCTATCTACT TTGTAAGCAA GCCAATTCAA GAATAGTATG
TCATGTTTTA ATTAAATATG ATGCTGATTT AATAAATATT CCCGTTGCAA ATTACGCAAA GGTCACATCA TCTTAAAGCA
TAAACGATCA GGGAGTTTCA CTCTTTTTTT TCTTGCCACT CGAGAGTGAT TCTGATTTGA AAATGCCAAA AAGGCACATG
GAATATGAAC AATATGTGGT TTTCAGACAG ATTTTCTGTG ATAATTGTAT CTTTACTCTG CATTTTTTAG CTGGAAACCA
GTGTCAGCTT TAGATCTAAC TAGCTCTAAA GATATGCGCT TCTATGATCA GCCCGCAGTT CGTTATCTTA GCATAAATTG
AAGAATGTGA TACTTATGAT ATTTGTTTCT TTAAATCAAT TGTTCCATTC GAGGTATCTA ATAATTGCCT CAATTTTCAT
TCCACAGGGC TAGTGAAAAT ACTGAAGAAG TATGACAAGA GAACTGGTGC TCTCATCCGC TTGCCCTTCA TTCAGAAGGT
CTTGCAACAA CCTTTCTTTA CCACTGACTT GCTCTACAAG CTTGTAAAGG AGTGTGAAAC AATGTTGGAC CGTCTTTTCC
CTGAGAATGA TCCTCCTCCA GTTTCTGGTG AGACAACTCC CCAAGCTGAA GGTTGTGATC CTTCAACTTC AACCACTACC
AAGAGTGATG GTGGTTTGCT GATTCCCAAG GAATTAGCTG AGATCGAGTA CATGGAGAGC CTATATATGA AGAGTACAGT
ATCAGCTTTG CATGTTTTGC AGGAAATTAG AAGTGGAAGC TCAACTGTTA GCATGTTTTC ATTGCCACCG TTGAAGATAA
GTGGTTCAGA AGAAACATGG AAGAAAATTC CGGTTCTTGA ACAAGCAGCC AAGTAACCTG CTGGGTTACA TTGACAACAA
ACTAGTGGGA TGACTATTTT CTGATCACTT TTTTTTTTTT TTTTTTTTAA ATCGGATGCC TCTGTTATGC TGCCTTAGAT
ACTAACACGG ATGTAAGATG CTAAATGTAA AGATGGAATT AATTTTATAG AATTATAGGT TCCATATAAT AAAACCTCTG
GAATTTAAAG AAGTTATGTT TTGACATTTT GCTAACATTC GTATTCTGTA GTAATGTAAT TATACATTCC GTATCTGGTT
TATATAAGGA TGCATTTGGA GATCAG

>Vigan.01G434100.01
GTGGAGTTAA TCTAACACTT TGAGTTTTTG AAAAAGAAAG AAAATCCAAA TGCAGAGGTT GGTAGGTAGC AGAGGGCGAC
AACACATGAC AAAAATCACT CCTCTCTCCT TCCTTCCTAT ACACCGAACA AGCTGCACAG TACACTACAG TACAACGTAG
AAGTAGTGTG GTAAGTTTGA AGAGAAAGAA ATAAAGGAAT AAAACCCCAA ATATACTGTT TTTACGGATA TTCCAACAAT
ACCCTCGAAT ATTCCTCCCT CCAACCGTTA TATCTATCAC CGCTTCATCC TCTATTTCCT CTCCTCGCTT CCTTTCTCCT
TACCAAAATT AAATTCCTCT TTCCAACGTT TTCCTAACAG AAAGCCATGA AATTCGGAAA GAGTCTCAGC AGCCAGATCG
AGAAAACCCT GCCGGAGTGG CGCGACAAGT TCCTCTCCTA CAAGGAGCTT AAGAAGAAGC TTAAACAATT TGACCCTCCT
GCTGCCGCCG ATGACCGTCC CGGAAAACGC CACAAGTCTG ATTCTGCAGC CACTTCCGCC GACATGTCCA AGGAGGAGAC
CGACTTCCGC AACTTGCTCG AGAGTGAACT CGACAAATTC AACACCTTCT TCGTTGAGAA GGAGGAAGAG TACATTATCA
GACTCAAGGA GTTACAAGAT AGGGTGGTCA AAGTTAAGGA TTTTAGTGAA GAGATGATGA AAATCCGCAA GGAAATTGTG
GATTTCCATG GAGAGATGGT CTTGCTGGAA AACTACAGTG CCCTGAACTA TACAGGGCTA GTGAAAATAC TGAAGAAGTA
TGACAAGAGA ACTGGTGCTC TCATCCGCTT GCCCTTCATT CAGAAGGTCT TGCAACAACC TTTCTTTACC ACTGACTTGC
TCTACAAGCT TGTAAAGGAG TGTGAAACAA TGTTGGACCG TCTTTTCCCT GAGAATGATC CTCCTCCAGT TTCTGGTGAG
ACAACTCCCC AAGCTGAAGG TTGTGATCCT TCAACTTCAA CCACTACCAA GAGTGATGGT GGTTTGCTGA TTCCCAAGGA
ATTAGCTGAG ATCGAGTACA TGGAGAGCCT ATATATGAAG AGTACAGTAT CAGCTTTGCA TGTTTTGCAG GAAATTAGAA
GTGGAAGCTC AACTGTTAGC ATGTTTTCAT TGCCACCGTT GAAGATAAGT GGTTCAGAAG AAACATGGAA GAAAATTCCG
GTTCTTGAAC AAGCAGCCAA GTAACCTGCT GGGTTACATT GACAACAAAC TAGTGGGATG ACTATTTTCT GATCACTTTT
TTTTTTTTTT TTTTTTAAAT CGGATGCCTC TGTTATGCTG CCTTAGATAC TAACACGGAT GTAAGATGCT AAATGTAAAG
ATGGAATTAA TTTTATAGAA TTATAGGTTC CATATAATAA AACCTCTGGA ATTTAAAGAA GTTATGTTTT GACATTTTGC
TAACATTCGT ATTCTGTAGT AATGTAATTA TACATTCCGT ATCTGGTTTA TATAAGGATG CATTTGGAGA TCAG

>Vigan.01G434100.01
ATGAAATTCG GAAAGAGTCT CAGCAGCCAG ATCGAGAAAA CCCTGCCGGA GTGGCGCGAC AAGTTCCTCT CCTACAAGGA
GCTTAAGAAG AAGCTTAAAC AATTTGACCC TCCTGCTGCC GCCGATGACC GTCCCGGAAA ACGCCACAAG TCTGATTCTG
CAGCCACTTC CGCCGACATG TCCAAGGAGG AGACCGACTT CCGCAACTTG CTCGAGAGTG AACTCGACAA ATTCAACACC
TTCTTCGTTG AGAAGGAGGA AGAGTACATT ATCAGACTCA AGGAGTTACA AGATAGGGTG GTCAAAGTTA AGGATTTTAG
TGAAGAGATG ATGAAAATCC GCAAGGAAAT TGTGGATTTC CATGGAGAGA TGGTCTTGCT GGAAAACTAC AGTGCCCTGA
ACTATACAGG GCTAGTGAAA ATACTGAAGA AGTATGACAA GAGAACTGGT GCTCTCATCC GCTTGCCCTT CATTCAGAAG
GTCTTGCAAC AACCTTTCTT TACCACTGAC TTGCTCTACA AGCTTGTAAA GGAGTGTGAA ACAATGTTGG ACCGTCTTTT
CCCTGAGAAT GATCCTCCTC CAGTTTCTGG TGAGACAACT CCCCAAGCTG AAGGTTGTGA TCCTTCAACT TCAACCACTA
CCAAGAGTGA TGGTGGTTTG CTGATTCCCA AGGAATTAGC TGAGATCGAG TACATGGAGA GCCTATATAT GAAGAGTACA
GTATCAGCTT TGCATGTTTT GCAGGAAATT AGAAGTGGAA GCTCAACTGT TAGCATGTTT TCATTGCCAC CGTTGAAGAT
AAGTGGTTCA GAAGAAACAT GGAAGAAAAT TCCGGTTCTT GAACAAGCAG CCAAGTAA

>Vigan.01G434100.01
MKFGKSLSSQ IEKTLPEWRD KFLSYKELKK KLKQFDPPAA ADDRPGKRHK SDSAATSADM SKEETDFRNL LESELDKFNT
FFVEKEEEYI IRLKELQDRV VKVKDFSEEM MKIRKEIVDF HGEMVLLENY SALNYTGLVK ILKKYDKRTG ALIRLPFIQK
VLQQPFFTTD LLYKLVKECE TMLDRLFPEN DPPPVSGETT PQAEGCDPST STTTKSDGGL LIPKELAEIE YMESLYMKST
VSALHVLQEI RSGSSTVSMF SLPPLKISGS EETWKKIPVL EQAAK*