GBrowse Details

Vigan.01G412600.01

Basic Information:
Name: Vigan.01G412600.01
Multiple alignment
Variant Information
Position: Chr01:54961497..54967292 (- strand)
Length: 5796
Functional Information:
Description: Similar to Translation initiation factor IF-3. [V7CBY3, Phaseolus vulgaris]
GO: Biological Process: translational initiation (GO:0006413)
Molecular Function: translation initiation factor activity (GO:0003743)
InterPro: Translation initiation factor 3 (IPR001288)
Translation initiation factor 3, conserved site (IPR019813)
Translation initiation factor 3, N-terminal (IPR019814)
Translation initiation factor 3, C-terminal (IPR019815)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:47.09,20.90,16.98,63.26,8.09,10.75,7.02,9.14
Arabidopsis thaliana homolog: AT4G30690.1
Automatic updates:
Name: NM_001414643 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max translation initiation factor IF-3-like (LOC100780734), transcript variant 2, mRNA; nuclear gene for chloroplast product.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:54961497..54962141 (- strand)
Length: 645
Type: three_prime_UTR
Position: Chr01:54962142..54962291 (- strand)
Length: 150
Type: CDS
Position: Chr01:54962623..54962715 (- strand)
Length: 93
Type: CDS
Position: Chr01:54962806..54962878 (- strand)
Length: 73
Type: CDS
Position: Chr01:54965019..54965052 (- strand)
Length: 34
Type: CDS
Position: Chr01:54965137..54965192 (- strand)
Length: 56
Type: CDS
Position: Chr01:54965774..54965826 (- strand)
Length: 53
Type: CDS
Position: Chr01:54966462..54966521 (- strand)
Length: 60
Type: CDS
Position: Chr01:54966717..54966756 (- strand)
Length: 40
Type: CDS
Position: Chr01:54966843..54967117 (- strand)
Length: 275
Type: CDS
Position: Chr01:54967118..54967292 (- strand)
Length: 175
Type: five_prime_UTR

>Vigan.01G412600.01 class=Sequence position=Chr01:54961497..54967292 (- strand)
ATGAAAAAAA ATGGTTAATT ATTAATATTA TTATGCTTAA ATGTTTAAGT TATGTAGTAG TATTTTTGCG ATGTTGGAGT
TTGAAAGGAG CGAGTGGAGC TAATAGGTGA CTCAGAGTTT AGGATAAGAG ATATGCGCCA TAGTTGAAGA TTGAATAAGG
AAGGGTCCGC GTGCCATGGC TGGCATCACC ACCGTCCCCT TCAAACTCTT TCATTACCAC GCCACACCTT CTCCTCTCTT
CACTTCTTCT CATTCCAAAC TCTTCGGCCT TTCCCTCTCT AATCCCAATT CCCTCAAATA CGATCCTTCT CTCTCCACCT
CTCTCTTCTA CGTAACCGCT CGCTACGGCG GCGGCGGCGG CGGCGGCTCT CGCTCCTTCG GCTCCGGCGA CTCCAGGAGA
CGCCAGCCCG AAACCGACGA CGACCAGGCT CTCGACCTCT CCACCCTCAG GTTCTGTACT CCCTCCTTGT CAATTCCTTT
CTCTCTTATG CTTCCTCTGT AATTTCGTCA TTAAGAATGC TTTGAATTTG AAATAGGTCA GATACCGTGA GGCTTATTGA
TCAGAACCAG AATATGGTTT GTTCTTTTTT TCCTTCTTTT GTATTTGAAC GCTTTCAATT CTGTTCGCTT GAGAAGCACT
TCTAGACTAA GCTACTACGT TTAGAAGTTT TATTTGATTG ATTGATTCGA GGATTGTATT CTTTGAGTTG TGAATCTTTC
TAATTCGGTC TGAAGCTAGC GGAGGTTGCT GAACTTGTTG TGTTTTTGTA GGTTGGAGTA ATGTCAATTG ATGACGCCAT
TCAAATGGCT GAGGATGTCG AACTTGATTT GGTATGATGT CTTGTGCCTG AGATTGCTGC TTTTGTGCTA AGTTTTGCAC
TATTTGTTGC CTACAATGTT GTGGTTTTCT CATTTACATT TCCCCCTCCT TTTGTTTTTG TTTCAGTTCG AAAGTATACC
CTATAGTTGT ATATGTTTTG CCATATAATT TCAGCTTAAT TAATATAACT TATTTTCACT ATGCCTAGTG TCGGTAGATG
ATGGAAATGG CAGTAAATAG AAAGCGGAAG TGCTTCCTAT AGTTTCACTT AGTTCATGTT TGAATAAACT TTTCTATTAG
GTAAACAAGA AGGTAAAATG AATCGAGCTT CTTCCATAAA TTAAGATAAG CTTAAGTACT TTAACTTTGA TAGAAGTTCT
GTCATCTAAT TTCCGCAGCA GGTGATAAGT TGGTTTTAAC TTCCGGTAGA ATCTCAATTC ATTTTACCTT TTTTTTTCTT
CCCTATGAGT GATTACAGGG AAATCTATCC AAACAAAGCT TTATATAGAT ATCACAAATA AAAGTGAATG AAGTCTGTCT
TAATATGGTG TTGAAAACCT AATTGATTCA GGAAAGTTGA CAATCAATTC AGTGGGAAGT TTCTGACATC AATGTGTAAT
CTTATTTACT CTCGTTTTTT GGTCAGGTAA TATTATCCCC AGATGCAGAT CCTCCTGTTG TTAGAATAAT GAATTACAGG
TATTATCTTT GTATATCACG AGAGAAAAAC TCTGCATTTT TGGTATCAAA ATGCCGATGG TTGATGGACA TATCAAAATT
TTTATGCATT TTTCAATCAA TTTAGCAGTT AATGATCTGT GTGTATACTT GTTTAACAAT AGTTGAACAT TAAGTAGTTT
GAATCGGGTT GATAGAGCAC TAATAAAATT TGGTTTCCAG TTTCTCTTGA TTCTGGCCTT GTGCAACAAT GTTTTATTCA
ATTTTTATTA ATTAGGGAAC AGTGGCGGCG GAGGTGGGAG TATTGTTTGC ATTCAGTTGT CTTAAATGAA TGTTGTGCTT
CCATGTATAT TTGGGGTGGG GTGTTGTGAA GACATGATAG AGCAATAAGT AACAGGGGAT CAATGGGGAG ATTAATTGAC
ACTTGTGTAG TTGTTTCAAG AAAGACTATA GCATTTGATG TTCATTTGAC TAAATAAAAT GAATCTGCAT GAAAGGACGT
GCCTAGATCT GCATCTGTTT GACATGATTG AGCACTTGTA TACTTATAAT TTAAGAATTG TTGGACCATG TAATTGATCC
TTGTATTTTC TTCTGAACAG CAAATATCGA TATGAACAAC AGAAGAAGAA AAGAGGACAG CAGAAGAAAA GTGCTGGTAA
ACATTGATAT TTTCTTCTAA ATTATTTGCA AAACTCAGAA AAAACAATAA ATTACTGACC TAATAGTCTT TTAAATGTAG
CTAATCGGAT GGATTTGAAG GAGCTCAAAA TGGGGTAATG TCCTAAGCTA ATCTTGGACT ATTGTTCTTC AGATTTCTTA
ATTATGGATC AAATAATACG TTTATTAATA ATTTTAACAA GCGTTAAAAA TCTGAAGTAT AGTTTGCTAT ATCAGGCAAT
CTAGTTTGGT TTTGGTTAAC TATTTGTTCT CGGGAAAGGC ATTACGCACA TCTACACAAG TTAATTATTT CAGTTAATTT
CAGGAAACTA GAGGAAGAAC AACAACCTAG CCTTTCCCCT CAAGGCGAAT TTGACTACAT GGACTAAATG GTGTCATATG
ATTCCACATA TAGTTTTTCT CCGTTTTCCT GTGTCTATTG ATCAGGGTAC ATTTCATCCA ATCTACTCAC CTTATTGTGG
GGGGTTTTAC ATGTCTTTTC TACGCATGTC CAAATCCCCT ATGGTGAGTT TCTACCATTT CTTCTACTAT AGAAGCTATT
CTTACTTTTT CTCTAATACA TTCCTACTTT TATCTTGTTT GATGTGTCTA CTCATTTTTT CTACATCGAA TTTATTCTCT
TAGCTTTTTA CCATCCGACA TTCAGTTCCA TACAACATTA AGTTGTGTGA TAAAATCTTC CTTTAAGTTT GGTTGGTACC
TTTCTGTCGC AAATGATAGC CAAGGAACTT CTCCATTTTC TCCTTCGCTC TTGAATCCCA TTGTATATAT CTCCATCCGT
TTCTCTGTTA TTCCATGTGA TGGAAACTAG ATACTTAAAT AACATGACTT TTGGTGTACT ATACTCTCCT AGTTTTGCTT
TTTTGGTAGG GATATTGCGT CAGCAAAATC CATGAAATTT TAAAGCTCGT CATTACATCT TCAACTCTAT TTATTTCCTC
TCTTGATTCT CCAACTAGAG CTATGACAGG CATTATGGCA TCAAATCTTT CAATATGCTC AAAACGCATT CAAGAGTAAG
GTAAAGGGAT AAGGGTTCAA AGTTGACCTT TGGTGCAATG CTACATATCA TCTACACTTC CATGTGGCTC CTAACTCACT
TCTTCTATAG CTCTTCACTG AAGGTTTTTT CTTCTTCTTT CTATTCAATT GTCACCACTT GATCCTGTCT TGGCTTTTCC
TTCTTACTCT CTTCTCATCT CTTATGGCTG TGATCCAGAT TCAATGTTGG GTACTCAAGC TCTCACTAGT TGAGACAATT
GTAGTCCATG CAAAGTTTTC TGTGATTTCC TTATGAAGAA TAATAATGAG AACATAATCA TCTTTATTTG TTTCTACTTG
ATCATAATCC CCATTTAAAT CAATGTATCT TCTACATTTA TAGATGTGCT CAATTCACAG CCATTTAGAC CCCATCTAAT
TATTTTTTTC TCCTAGTGGT AATATTCCCT CTAAAGCTTC GAAATCTTCC CAAATTCTCA TGTCGTGGCA CCCTTCTAGT
GGTACATAAG CATTGATCAC ATTTAAAGCA CCCCTTTCCT TTACAAATTG GGTTAAATAT GTTTTGTAAA ATAAGCACAT
TTTAATTTTT ATTTCTTGTG AAAGTTTTCC CTTGGACTTC AGCCGTTTAG AATCTAAAAT TAATACTTTT GATTCCTATT
GTTATAAACA TTAGTTAACC ATTTACATGT TTAATGGGAG GTTGCATGGC AACCTAGGTG GCATCCAATA GTGTGTATGT
GATGTCATGT CAACACTTGA CTCCCAAAAA TTATTTTGGT CTCTAAAATG AATAGTATTT ATTTTGTTCG TTCATTTTAT
AAGAACTTAA CATATTTAGC CATTACAATT TATAGAGCTA TGGTCTATCT CCTAACCTCT GTACATTCAC AACATAATTT
CTCAATACTT ATTATATATA ACTAAATACT TCCCCCTTTG ATTTAATTTT TACAACACAC TACAACTAAA AGGAGTTTGT
TTACCATATT TGCTCAGAGA TGAACTAGGA AGTTTTATAT GATGATGCAT CACGCTGTAA AGATATAGGA AACTGCTGTT
GCAGTATTAA TTAAATGCAT AAAACTTATT CTGTAATTTA CGCTTTTCTT CCATAATTAA AGCAGTTACA GCTGTTGCCT
TTCATGAGCT GTGGTTGAGT TGTAGTTATT TTTACTAGAA GAGTCTTGTA CTTATGCCTT TCTGTTACTA ATTCTTTGTA
CTTAATTTTA ACAGTTACAA CATAGATGAG CATGATTATT CAGTGCGTTT GAGAGCTGCA CGGAAATTTT TGAAAGACGG
TGACAAGGTT GCATGAATTA TATTATCATG TCATATTAAG CACGGTGTTC CTACACGTAT ACTAATGTAT TGAGATCATT
GGGATCCATT CCTGCAGGTT AAGGTCATAG TAAACCTTAA GGGTCGTGAA AATGAATTCA GGAATATTGC TATTGAGCTT
CTTACACGTT TTCAGAATGA TGTTGGGGAG GTACGTCATG TCACTTTCCC GTGTGTTATA CTTATCATAT TTTTAGGTAT
TAAAAACCTG ACTATTTTCC ATACAAAACG AAACTGGTTA CAAGAAAAAT AGATCTTGAT ATGTTTGTTA TACCGGTATT
TTATTGTGTT ATAGTCCCTA ACTTAGCACA CTTTAATAAT TCTCAGGCAC CACTACATTT GCTATTTCCG TTTGATTTCT
TTTGTGCATT GGATTTACTT TTAGTGAATT CATTCCATAG TCTTCTGTCC CGATATCTAA TTTTATGGTC ATTAGAGACA
TATCTATTTG AATTTCATAT CCAAACCACA CATATGTGCA GGTTGGACTA GAGGAGGCAA AAAACTTCCG TGACAGAAAC
ATCTTCATAA TTTTGGTTCC AAACAAAGCT GCTGTACAGA AAACTCAAGA ACCACCAAAG AAAAAAGACA AGTCCAACAA
AGATGAAGTC TCCGCCAGTG TCCAAGCGTA ACCGAAAACT TCCAAGCTAG TTTCTAATTG TAGAATGAAT TGAGTAACTT
TTATTGGTCT GAGTTGTATG ATTTATAATT CATGTGCAAT AATAGCATAT AAATTCTCGA GGATTTTAAT TATAGAGGCA
GCCTTGGCTT TTCGAACACA AGTTGCTGAA GGGATACCAG TATACCACTA ACCGCTCTTC ACAAGACTAA TCATAAAAGG
ACAATCGCAT GTGGGTAATA TATGCTCATT TAATTTTAGT TTGACAGTAA TATTTGCATA CTTCTGTTCG AATTCAATGC
ATGTAAAGTT GGTGACAGGT GGAAGGGTCC ATACCTTGAT GAAGACAAGA AGCACATGGT CCTAACAAAC GATTGATTTG
GAAGGAAGCC CGTCAATTTT CGGGTTTGTT CCTGCCTAAT ATGGTTAAGC TAACGCTAAG TACCTCTTTT TGGATCCTGC
TTATGTGTAG GTTCTGCTCT AACGCTTGTT ATTTTAACTA AAGATGTAGA GGCTGCAACT TACGGACCTA ACGATTTGAA
GGTAGCTTAG TTTTGAAGTG CTTACGTCCC AAGAAAACTA AAATGTTCCA CATGTTTTTG CTCCATGAGT AAGCATAACG
TAGTCCACTC CTCCTGAAAG CAACGTGTTA TCGTAT

>Vigan.01G412600.01
ATGAAAAAAA ATGGTTAATT ATTAATATTA TTATGCTTAA ATGTTTAAGT TATGTAGTAG TATTTTTGCG ATGTTGGAGT
TTGAAAGGAG CGAGTGGAGC TAATAGGTGA CTCAGAGTTT AGGATAAGAG ATATGCGCCA TAGTTGAAGA TTGAATAAGG
AAGGGTCCGC GTGCCATGGC TGGCATCACC ACCGTCCCCT TCAAACTCTT TCATTACCAC GCCACACCTT CTCCTCTCTT
CACTTCTTCT CATTCCAAAC TCTTCGGCCT TTCCCTCTCT AATCCCAATT CCCTCAAATA CGATCCTTCT CTCTCCACCT
CTCTCTTCTA CGTAACCGCT CGCTACGGCG GCGGCGGCGG CGGCGGCTCT CGCTCCTTCG GCTCCGGCGA CTCCAGGAGA
CGCCAGCCCG AAACCGACGA CGACCAGGCT CTCGACCTCT CCACCCTCAG GTCAGATACC GTGAGGCTTA TTGATCAGAA
CCAGAATATG GTTGGAGTAA TGTCAATTGA TGACGCCATT CAAATGGCTG AGGATGTCGA ACTTGATTTG GTAATATTAT
CCCCAGATGC AGATCCTCCT GTTGTTAGAA TAATGAATTA CAGCAAATAT CGATATGAAC AACAGAAGAA GAAAAGAGGA
CAGCAGAAGA AAAGTGCTGC TAATCGGATG GATTTGAAGG AGCTCAAAAT GGGTTACAAC ATAGATGAGC ATGATTATTC
AGTGCGTTTG AGAGCTGCAC GGAAATTTTT GAAAGACGGT GACAAGGTTA AGGTCATAGT AAACCTTAAG GGTCGTGAAA
ATGAATTCAG GAATATTGCT ATTGAGCTTC TTACACGTTT TCAGAATGAT GTTGGGGAGG TTGGACTAGA GGAGGCAAAA
AACTTCCGTG ACAGAAACAT CTTCATAATT TTGGTTCCAA ACAAAGCTGC TGTACAGAAA ACTCAAGAAC CACCAAAGAA
AAAAGACAAG TCCAACAAAG ATGAAGTCTC CGCCAGTGTC CAAGCGTAAC CGAAAACTTC CAAGCTAGTT TCTAATTGTA
GAATGAATTG AGTAACTTTT ATTGGTCTGA GTTGTATGAT TTATAATTCA TGTGCAATAA TAGCATATAA ATTCTCGAGG
ATTTTAATTA TAGAGGCAGC CTTGGCTTTT CGAACACAAG TTGCTGAAGG GATACCAGTA TACCACTAAC CGCTCTTCAC
AAGACTAATC ATAAAAGGAC AATCGCATGT GGGTAATATA TGCTCATTTA ATTTTAGTTT GACAGTAATA TTTGCATACT
TCTGTTCGAA TTCAATGCAT GTAAAGTTGG TGACAGGTGG AAGGGTCCAT ACCTTGATGA AGACAAGAAG CACATGGTCC
TAACAAACGA TTGATTTGGA AGGAAGCCCG TCAATTTTCG GGTTTGTTCC TGCCTAATAT GGTTAAGCTA ACGCTAAGTA
CCTCTTTTTG GATCCTGCTT ATGTGTAGGT TCTGCTCTAA CGCTTGTTAT TTTAACTAAA GATGTAGAGG CTGCAACTTA
CGGACCTAAC GATTTGAAGG TAGCTTAGTT TTGAAGTGCT TACGTCCCAA GAAAACTAAA ATGTTCCACA TGTTTTTGCT
CCATGAGTAA GCATAACGTA GTCCACTCCT CCTGAAAGCA ACGTGTTATC GTAT

>Vigan.01G412600.01
ATGGCTGGCA TCACCACCGT CCCCTTCAAA CTCTTTCATT ACCACGCCAC ACCTTCTCCT CTCTTCACTT CTTCTCATTC
CAAACTCTTC GGCCTTTCCC TCTCTAATCC CAATTCCCTC AAATACGATC CTTCTCTCTC CACCTCTCTC TTCTACGTAA
CCGCTCGCTA CGGCGGCGGC GGCGGCGGCG GCTCTCGCTC CTTCGGCTCC GGCGACTCCA GGAGACGCCA GCCCGAAACC
GACGACGACC AGGCTCTCGA CCTCTCCACC CTCAGGTCAG ATACCGTGAG GCTTATTGAT CAGAACCAGA ATATGGTTGG
AGTAATGTCA ATTGATGACG CCATTCAAAT GGCTGAGGAT GTCGAACTTG ATTTGGTAAT ATTATCCCCA GATGCAGATC
CTCCTGTTGT TAGAATAATG AATTACAGCA AATATCGATA TGAACAACAG AAGAAGAAAA GAGGACAGCA GAAGAAAAGT
GCTGCTAATC GGATGGATTT GAAGGAGCTC AAAATGGGTT ACAACATAGA TGAGCATGAT TATTCAGTGC GTTTGAGAGC
TGCACGGAAA TTTTTGAAAG ACGGTGACAA GGTTAAGGTC ATAGTAAACC TTAAGGGTCG TGAAAATGAA TTCAGGAATA
TTGCTATTGA GCTTCTTACA CGTTTTCAGA ATGATGTTGG GGAGGTTGGA CTAGAGGAGG CAAAAAACTT CCGTGACAGA
AACATCTTCA TAATTTTGGT TCCAAACAAA GCTGCTGTAC AGAAAACTCA AGAACCACCA AAGAAAAAAG ACAAGTCCAA
CAAAGATGAA GTCTCCGCCA GTGTCCAAGC GTAA

>Vigan.01G412600.01
MAGITTVPFK LFHYHATPSP LFTSSHSKLF GLSLSNPNSL KYDPSLSTSL FYVTARYGGG GGGGSRSFGS GDSRRRQPET
DDDQALDLST LRSDTVRLID QNQNMVGVMS IDDAIQMAED VELDLVILSP DADPPVVRIM NYSKYRYEQQ KKKRGQQKKS
AANRMDLKEL KMGYNIDEHD YSVRLRAARK FLKDGDKVKV IVNLKGRENE FRNIAIELLT RFQNDVGEVG LEEAKNFRDR
NIFIILVPNK AAVQKTQEPP KKKDKSNKDE VSASVQA*