GBrowse Details

Vigan.01G395200.01

Basic Information:
Name: Vigan.01G395200.01
Multiple alignment
Variant Information
Position: Chr01:53418459..53421168 (+ strand)
Length: 2710
Functional Information:
Description: Similar to Pectate lyase. [V7CF11, Phaseolus vulgaris]
InterPro: Pectate lyase/Amb allergen (IPR002022)
Pectin lyase fold/virulence factor (IPR011050)
Pectin lyase fold (IPR012334)
AmbAllergen (IPR018082)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.12,0.05,43.70,14.66,41.37,167.99,52.85,36.32
Arabidopsis thaliana homolog: AT1G04680.1, AT1G67750.1, AT3G07010.1, AT3G24230.1, AT3G24670.1, AT3G27400.1, AT3G53190.1, AT4G13210.2, AT4G13710.1, AT4G24780.1, AT5G48900.1, AT5G63180.1
Automatic updates:
Name: NM_001255614 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max probable pectate lyase 22-like (LOC100779940), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:53418459..53419150 (+ strand)
Length: 692
Type: five_prime_UTR
Position: Chr01:53419151..53419263 (+ strand)
Length: 113
Type: CDS
Position: Chr01:53419442..53420188 (+ strand)
Length: 747
Type: CDS
Position: Chr01:53420368..53420506 (+ strand)
Length: 139
Type: CDS
Position: Chr01:53420588..53420809 (+ strand)
Length: 222
Type: CDS
Position: Chr01:53420810..53421168 (+ strand)
Length: 359
Type: three_prime_UTR

>Vigan.01G395200.01 class=Sequence position=Chr01:53418459..53421168 (+ strand)
CTTCCACCCA GTAACGTTTC AATTTTTCAC GATCTAACTC GCTTATGCGA AACAAAGTCA AAATATAGAG AATTTGGTGC
CAAAAATGGG GTGAAGAGTT TATTTTGACA CCCAATATGA ACACAGTTAA CTGAAAGTTG CCAACACCTC ATTGCATCAC
ATGATCCCTC CTTTTGAGGA GGCTTTTACT TTCACCACGC CCCTTGAATA ACTCAATTAA TCAAACTGCC CATTACTCGT
TGCGCCATGC CTACTTAATT TCATTATCCT CAGAGCTTAT GCAAGCTAAT GTGTCAACAT GGAGCCCGGA ACTTTTTGAA
ATTTGGGACC ATAATGGTAT TCATTAGAGA AACGCAGGTT GTTATGCTGT AATATTAATT ATTATGAGTG TTAAAAAGCA
ACAACAGGGA AGTGAGAGTT ACAGTAGTGG AGAAGTGGTA AAAGAAAACA TCATTTGATA GCACATTCCT CATATTTTGT
TTTGTTTTAC TCGTAGGCTG GGGGTAATGT TACTCGGGAG GTTCCCCCAT CATTTGGGGC TTGCTTAACG GACAAAACTG
CCCAACTGGT ATCCCGTAAA ACCAGAAATC ACGAAGCACC TGGGTCCTAC ATGTTCAGTT TAGCCCTGCT TTCATTCCTT
TATATACCCC TCCAACTACG TACTTTCTCC TCACACTTCA CCAAATCAAC ACATGGCCAC CACTTCCACC TCTCTCCTCT
TCCTCCTCTT CTCTCTCCTC ACCCCCTCTC TCATTTCTTC TTCACCGCTT CAAAACCCTG AATTGGTTGC CCAAGAAGTT
AACAGGTAAA CCCACACTCA AACCCACACC TCCTACCTCT AACACCACAC GTCTTAAAGC AATGTACTCA CACAAATGTT
ACCAACATAT TTTGTCACAC ACTTCTTATT AAATGCCGCA TAAATTTGTT AGACAACGTA ATGTTGCTGC CATCAATTTT
ATATTTTTGT CTGTTTGATG CAGGAAAATC AATGCCTCTG TGGCCAGGAG GAATTTGGGT TACCTGTCAT GTGGGACAGG
TAACCCAATA GACGACTGTT GGAGGTGTGA CCCGAACTGG GAGAAGAACA GGCAGAGGCT GGCGGATTGT GCAATTGGGT
TTGGGAAAAA CGCGATTGGA GGAAAGAACG GGAAAATCTA CGTGGTGACG GATTCAAGCG ACGATAACGC GGTGACGCCT
AAGCCGGGGA CGCTCCGTTA CGCGGTGATT CAGGAGGAGC CTCTTTGGAT CATATTCGCG AGGGACATGG TGATTAAGCT
GAAGGAGGAG CTTATAATGA ACTCGTTCAA GACGATCGAC GGAAGAGGAG CCAGCGTGCA CATTGCGGGT GGGCCATGCA
TTACGATACA GTATGTGACG AATGTTATAA TCCACGGGAT AAATATTCAC GACTGTAAGC AAGGGGGGAA TGCTATGGTG
CGGGACTCCC CAAGGCACTA CGGGTGGAGG ACCGTATCCG ACGGTGATGG CGTGTCGATC TTTGGAGGAA GCCACATATG
GGTTGACCAC TGCTCCTTGT CTAACTGCAA TGATGGGCTG ATCGATGCCA TTCATGGGTC TACCGCCATT ACCATCTCCA
ACAATTACAT GACTCACCAT GATAAAGTGA TGCTTTTGGG CCACAGCGAC GCCTACACTC AAGACAAGAA CATGCAGGTC
ACAATTGCTT TCAACCACTT TGGGGAAGGG CTCGTTCAGA GGATGCCAAG GTAAAGTGAT AAAGTAAAGT AAAAGTAAAA
TCTTGTTTCC ATTTTCCAAA ATTGCTTTGC CGGTGAAATT TGAGAAAAAG AGGGAGGGAA AACAGTCAAA GCAAAAGGGT
TACTTTTTCA ATTATGTGGG GTCCCGGTGG CGAAATTTGA AAGAGAAAAA ATGTTGGTGA TGCGTGCAGG TGTAGGCATG
GATATTTTCA TGTGGTGAAC AATGACTACA CCCACTGGGA AATGTATGCC ATTGGAGGAA GTGCCGACCC AACCATCAAC
AGTCAAGGAA ATAGGTTCGT TGCACCCGAT GACAGATTCA GCAAAGAGGT ATTATTCCTG ATATAATCAC GAATAGGAAA
GTGTTTTTAT TAAGAGTAAA TATTTATATT GATTTGTGAA ATTGTGTAGG TGACAAAGCA TGAGGATGCA CCAGAGAATG
AATGGAAAGG GTGGAATTGG AGGTCAGAAG GAGACCTAAT GGTAAACGGT GCGTTTTTCA CAGCATCGGG AGCAGGAGCC
TCCTCTAGCT ATGCAAGAGC CTCTAGCCTG AGCGCGAGGC CATCTTCGCT GGTGGGCTCC ATAACGACCA ATGCGGGTGC
ACTCAACTGC AGGAAGGGTT CCCGCTGCTG ATTATGACCA TGACCCCTCC ACGAAAACGA GACAAAATTA TTAAAAAAAT
GAAAAAGAAT GACCCTATTA ATTACCTACG GTCATTTCTT TAGCTAGGCT GTATATTTTC CTATGCTTTT GTTCTTCCAT
TCTATTCTTT TCTTTCCTTC TTTAGTTTTT CTCACATTGT TTTTCACTAT TTGTCTTTTG GGGTTTCTGA TATGGTCTAC
TCTCGTATGA TTACAACCTC TGGCTGTAAA CTTCACAGAA CCAAATTGGT GAATCTGGTA TGTGAGAAAG CAAGTGCAGA
AGAGTTGATA TTGATATAAA AAAAATATAT ATATATATAT ATATATATAT AATATGTGAT TATGTTGGAA 

>Vigan.01G395200.01
CTTCCACCCA GTAACGTTTC AATTTTTCAC GATCTAACTC GCTTATGCGA AACAAAGTCA AAATATAGAG AATTTGGTGC
CAAAAATGGG GTGAAGAGTT TATTTTGACA CCCAATATGA ACACAGTTAA CTGAAAGTTG CCAACACCTC ATTGCATCAC
ATGATCCCTC CTTTTGAGGA GGCTTTTACT TTCACCACGC CCCTTGAATA ACTCAATTAA TCAAACTGCC CATTACTCGT
TGCGCCATGC CTACTTAATT TCATTATCCT CAGAGCTTAT GCAAGCTAAT GTGTCAACAT GGAGCCCGGA ACTTTTTGAA
ATTTGGGACC ATAATGGTAT TCATTAGAGA AACGCAGGTT GTTATGCTGT AATATTAATT ATTATGAGTG TTAAAAAGCA
ACAACAGGGA AGTGAGAGTT ACAGTAGTGG AGAAGTGGTA AAAGAAAACA TCATTTGATA GCACATTCCT CATATTTTGT
TTTGTTTTAC TCGTAGGCTG GGGGTAATGT TACTCGGGAG GTTCCCCCAT CATTTGGGGC TTGCTTAACG GACAAAACTG
CCCAACTGGT ATCCCGTAAA ACCAGAAATC ACGAAGCACC TGGGTCCTAC ATGTTCAGTT TAGCCCTGCT TTCATTCCTT
TATATACCCC TCCAACTACG TACTTTCTCC TCACACTTCA CCAAATCAAC ACATGGCCAC CACTTCCACC TCTCTCCTCT
TCCTCCTCTT CTCTCTCCTC ACCCCCTCTC TCATTTCTTC TTCACCGCTT CAAAACCCTG AATTGGTTGC CCAAGAAGTT
AACAGGAAAA TCAATGCCTC TGTGGCCAGG AGGAATTTGG GTTACCTGTC ATGTGGGACA GGTAACCCAA TAGACGACTG
TTGGAGGTGT GACCCGAACT GGGAGAAGAA CAGGCAGAGG CTGGCGGATT GTGCAATTGG GTTTGGGAAA AACGCGATTG
GAGGAAAGAA CGGGAAAATC TACGTGGTGA CGGATTCAAG CGACGATAAC GCGGTGACGC CTAAGCCGGG GACGCTCCGT
TACGCGGTGA TTCAGGAGGA GCCTCTTTGG ATCATATTCG CGAGGGACAT GGTGATTAAG CTGAAGGAGG AGCTTATAAT
GAACTCGTTC AAGACGATCG ACGGAAGAGG AGCCAGCGTG CACATTGCGG GTGGGCCATG CATTACGATA CAGTATGTGA
CGAATGTTAT AATCCACGGG ATAAATATTC ACGACTGTAA GCAAGGGGGG AATGCTATGG TGCGGGACTC CCCAAGGCAC
TACGGGTGGA GGACCGTATC CGACGGTGAT GGCGTGTCGA TCTTTGGAGG AAGCCACATA TGGGTTGACC ACTGCTCCTT
GTCTAACTGC AATGATGGGC TGATCGATGC CATTCATGGG TCTACCGCCA TTACCATCTC CAACAATTAC ATGACTCACC
ATGATAAAGT GATGCTTTTG GGCCACAGCG ACGCCTACAC TCAAGACAAG AACATGCAGG TCACAATTGC TTTCAACCAC
TTTGGGGAAG GGCTCGTTCA GAGGATGCCA AGGTGTAGGC ATGGATATTT TCATGTGGTG AACAATGACT ACACCCACTG
GGAAATGTAT GCCATTGGAG GAAGTGCCGA CCCAACCATC AACAGTCAAG GAAATAGGTT CGTTGCACCC GATGACAGAT
TCAGCAAAGA GGTGACAAAG CATGAGGATG CACCAGAGAA TGAATGGAAA GGGTGGAATT GGAGGTCAGA AGGAGACCTA
ATGGTAAACG GTGCGTTTTT CACAGCATCG GGAGCAGGAG CCTCCTCTAG CTATGCAAGA GCCTCTAGCC TGAGCGCGAG
GCCATCTTCG CTGGTGGGCT CCATAACGAC CAATGCGGGT GCACTCAACT GCAGGAAGGG TTCCCGCTGC TGATTATGAC
CATGACCCCT CCACGAAAAC GAGACAAAAT TATTAAAAAA ATGAAAAAGA ATGACCCTAT TAATTACCTA CGGTCATTTC
TTTAGCTAGG CTGTATATTT TCCTATGCTT TTGTTCTTCC ATTCTATTCT TTTCTTTCCT TCTTTAGTTT TTCTCACATT
GTTTTTCACT ATTTGTCTTT TGGGGTTTCT GATATGGTCT ACTCTCGTAT GATTACAACC TCTGGCTGTA AACTTCACAG
AACCAAATTG GTGAATCTGG TATGTGAGAA AGCAAGTGCA GAAGAGTTGA TATTGATATA AAAAAAATAT ATATATATAT
ATATATATAT ATAATATGTG ATTATGTTGG AA

>Vigan.01G395200.01
ATGGCCACCA CTTCCACCTC TCTCCTCTTC CTCCTCTTCT CTCTCCTCAC CCCCTCTCTC ATTTCTTCTT CACCGCTTCA
AAACCCTGAA TTGGTTGCCC AAGAAGTTAA CAGGAAAATC AATGCCTCTG TGGCCAGGAG GAATTTGGGT TACCTGTCAT
GTGGGACAGG TAACCCAATA GACGACTGTT GGAGGTGTGA CCCGAACTGG GAGAAGAACA GGCAGAGGCT GGCGGATTGT
GCAATTGGGT TTGGGAAAAA CGCGATTGGA GGAAAGAACG GGAAAATCTA CGTGGTGACG GATTCAAGCG ACGATAACGC
GGTGACGCCT AAGCCGGGGA CGCTCCGTTA CGCGGTGATT CAGGAGGAGC CTCTTTGGAT CATATTCGCG AGGGACATGG
TGATTAAGCT GAAGGAGGAG CTTATAATGA ACTCGTTCAA GACGATCGAC GGAAGAGGAG CCAGCGTGCA CATTGCGGGT
GGGCCATGCA TTACGATACA GTATGTGACG AATGTTATAA TCCACGGGAT AAATATTCAC GACTGTAAGC AAGGGGGGAA
TGCTATGGTG CGGGACTCCC CAAGGCACTA CGGGTGGAGG ACCGTATCCG ACGGTGATGG CGTGTCGATC TTTGGAGGAA
GCCACATATG GGTTGACCAC TGCTCCTTGT CTAACTGCAA TGATGGGCTG ATCGATGCCA TTCATGGGTC TACCGCCATT
ACCATCTCCA ACAATTACAT GACTCACCAT GATAAAGTGA TGCTTTTGGG CCACAGCGAC GCCTACACTC AAGACAAGAA
CATGCAGGTC ACAATTGCTT TCAACCACTT TGGGGAAGGG CTCGTTCAGA GGATGCCAAG GTGTAGGCAT GGATATTTTC
ATGTGGTGAA CAATGACTAC ACCCACTGGG AAATGTATGC CATTGGAGGA AGTGCCGACC CAACCATCAA CAGTCAAGGA
AATAGGTTCG TTGCACCCGA TGACAGATTC AGCAAAGAGG TGACAAAGCA TGAGGATGCA CCAGAGAATG AATGGAAAGG
GTGGAATTGG AGGTCAGAAG GAGACCTAAT GGTAAACGGT GCGTTTTTCA CAGCATCGGG AGCAGGAGCC TCCTCTAGCT
ATGCAAGAGC CTCTAGCCTG AGCGCGAGGC CATCTTCGCT GGTGGGCTCC ATAACGACCA ATGCGGGTGC ACTCAACTGC
AGGAAGGGTT CCCGCTGCTG A

>Vigan.01G395200.01
MATTSTSLLF LLFSLLTPSL ISSSPLQNPE LVAQEVNRKI NASVARRNLG YLSCGTGNPI DDCWRCDPNW EKNRQRLADC
AIGFGKNAIG GKNGKIYVVT DSSDDNAVTP KPGTLRYAVI QEEPLWIIFA RDMVIKLKEE LIMNSFKTID GRGASVHIAG
GPCITIQYVT NVIIHGINIH DCKQGGNAMV RDSPRHYGWR TVSDGDGVSI FGGSHIWVDH CSLSNCNDGL IDAIHGSTAI
TISNNYMTHH DKVMLLGHSD AYTQDKNMQV TIAFNHFGEG LVQRMPRCRH GYFHVVNNDY THWEMYAIGG SADPTINSQG
NRFVAPDDRF SKEVTKHEDA PENEWKGWNW RSEGDLMVNG AFFTASGAGA SSSYARASSL SARPSSLVGS ITTNAGALNC
RKGSRC*