GBrowse Details

Vigan.01G380500.01

Basic Information:
Name: Vigan.01G380500.01
Multiple alignment
Variant Information
Position: Chr01:51917678..51922334 (+ strand)
Length: 4657
Functional Information:
Description: Similar to Uncharacterized protein. [I1K0L7, Glycine max]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Molecular Function: catalytic activity (GO:0003824)
InterPro: Transaldolase (IPR001585)
Aldolase-type TIM barrel (IPR013785)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:28.62,28.03,36.66,11.45,26.66,40.52,28.13,32.28
Arabidopsis thaliana homolog: AT1G12230.2
Automatic updates:
Name: NM_001255430 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max transaldolase-like (LOC100800377), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:51917678..51917854 (+ strand)
Length: 177
Type: five_prime_UTR
Position: Chr01:51917855..51918038 (+ strand)
Length: 184
Type: CDS
Position: Chr01:51918204..51918282 (+ strand)
Length: 79
Type: CDS
Position: Chr01:51918375..51918450 (+ strand)
Length: 76
Type: CDS
Position: Chr01:51918547..51918630 (+ strand)
Length: 84
Type: CDS
Position: Chr01:51918740..51918844 (+ strand)
Length: 105
Type: CDS
Position: Chr01:51919299..51919379 (+ strand)
Length: 81
Type: CDS
Position: Chr01:51919471..51919535 (+ strand)
Length: 65
Type: CDS
Position: Chr01:51920650..51920719 (+ strand)
Length: 70
Type: CDS
Position: Chr01:51920804..51920881 (+ strand)
Length: 78
Type: CDS
Position: Chr01:51921181..51921278 (+ strand)
Length: 98
Type: CDS
Position: Chr01:51921381..51921516 (+ strand)
Length: 136
Type: CDS
Position: Chr01:51922025..51922171 (+ strand)
Length: 147
Type: CDS
Position: Chr01:51922172..51922334 (+ strand)
Length: 163
Type: three_prime_UTR

>Vigan.01G380500.01 class=Sequence position=Chr01:51917678..51922334 (+ strand)
TATTGCTTAA AAACTGTTAC AAAGATAGGT AGCAGAGAAA AAAAAAAATA TAAATCTGAC ACGATTGGTG CCAAAATTAG
AGAGGTGAAT GTGTTTTGGA TGTGGATCTG GCCTATTACT TTCAGTTATT AATTCAGAAG TGGTAACGGA GCTTACCGTC
TTAATCTCAA TCTCAAAATG TCACTCACTT TGCAAACTCC GTCCTCGACG ACGCTCTCTT CTGCATCTTC CATTCACTCG
ACAACAAGAA GATCGACTTC TTACTTCTCG ATTCGTTCCA CGCTTTCCCC AAAAACTATC CATTGCAATT CCCGCAGGTC
CTACCCTCAA ACTCTCGCTT CTGCTTCCTC TATCAATATC GGTAACTCAT AATTTCATCA CATTATATAA TATATATATA
TATATATATA TATATATATA TATATATATA TATATATATA TATATATATA TATATATATA TATATTCATA TTCGTTCCTT
CATTTCGAGC TTTCCTTTTT CTCTCATTTC GCAATTTCTG TTTCAGCTTC CACCACTGAA CTCGATGCTG TGTCCGCCTT
CAGCGAGATC GTCCCCGACA CCGTCGTTTT CGATGATTTC GAGAAGTAAT GTTGTTTTAT TCTTTTTGTT TCATTCGTAT
GGAATTTGAA TGAGTTCTGA TCTGATTGTT AATCAAAGAG AGAATACGCT GCTGCAGATT TCCTCCAACT GCTGCTACTG
TCAGTTCATC GCTTCTCTTG GGAATATGTG GCCTTCCAGA TACCATTTTT AGGGTAACAT GTGCATTTCA ATCTTTGGAA
AACCTAACTA GTGCATTTCG GTCCGAGTCT GACTTAACGA GTTACGCGTT TTTTTTATTA TTATTATAGA ATGCTGTGGA
AATGGCTTTG GCTGATTCTG AGTGTTATGG AATTGAAAAT CCTAATGCAC GAGTGTCTTG TTTTGTCAAC AAGGTATTTG
TTTCTGTTTT TCATTTTAAT TTTGATTTAT TGATAACTTG TGATGCTCAT TTGAGTCTAA TCTATCTGTT GTTGTTTTAC
GAATTTGTTC CTGAAACTGT AGGCTTTCGC GAATGTGGGT AGTGACTTGG CAAAGCTTGT CCCTGGCCGT GTTTCCACAG
AGGTGGATGC GCGGCTTGCT TATGACACGC ACGCCATTAT CAGGAAGGTA TTTGACATGT TTCATGACAA CTTATTATGT
TCAAATTCTA CTGCCTTGTT GAATTATACA CTAGTAGTTC CATCGCTTCT TTCTCAGGTT CCAATCACAG GTCTTGTAAT
TTCTCAGGAT TATATAGTTC TTATTAAGTT ATCTATACTA GTCATGAGTA AGAGCTACAG TTTCGATTTT GGCTCCAGAT
GTAGGAAACC AATTGTTTTA GTTGATTGCA CATCATTCTC ATATAGGCAA TGCCCAAACT GAGGAGATAG GTGTTTCTCT
CTGACTCTCT TTTCCTTTTC GCTTTTTCTC TCTGTAAATT CTAAGCTGTG AGTGACTGCT TGACCGTTTA GAAACAAGCT
TCACGTTTTG TGAGTCCTTG TCGCTCTGTA CAGTACAATG ACAAAATACA TATGTGTTGT GAGTTGGTGA AATCTAATGC
TACTGTTATC AAATTTTACA GGTGCATGAC TTGTTAAAGT TGTACAATGA TAGCAATGTA CCTCCTGAAC GTCTGTTGTT
TAAAATTCCT TCAACTTGGC AAGTGAGTAA TCTGAAAAAT AGAATTGTAG TGCTAGCTGA ATCCAGATAT ACTGATGCTT
GATTCATGTA CTGAAGCGCT TACTTTTATT TAGGGAATAG AGGCTGCAAG GTTGCTGGAA TCTGAAGGCA TACAAACACA
TTTGACCTTT GTCTATAGGT AGTTTTGTTA AATATTTTTA AAATGCACTC GAGGCAGTAT AAGTGCGAAG CCATATTAGT
ATACTGCTTA AAAGGCTTGG ATCTTTTTTA TTATGTGTAG TACACCGATT TTTCTGTTTT GAATGCTCTT AATACAGTGC
AATGTTATCT CTAAACCTCA TGAATCTTAC GAAAGTATAT TTTATTATAA GAGAAAAAAA TTCAGCAATC TTGGTAAGCT
ATATCCATAA CGAGTTTTAT TCAACTGATA TGCATGCTCA CTATTCTCAA GGGCATAGTT TCACTGTTGT TTTTATTAAT
CTCAAAATGG TTTCATCTGA GCTTGAATGA ACTGATGTTT CTTTTATTCA GCAGAATCTC TTATCTTATA TATCTTTATT
CCGTAGCAAT GATAAATTTG CTAGTATGCA GTAGGTTGAT GTTGCGCATA TTAGCTTCGA ATCTAGGTGT ATGTGGACAT
CTCAATCATC TCACAATAAA TGAAACACTA TCCGTGTAAC AGAACTTATA GAATATATAA ATTAATGCAA AGTTCTGGTC
ATATTCCCAT AAATAGAAAA ATAAAAGCCA TCTTTCCCCT GAACACAGAT ATTTTATGTA TTGGAAAAAA TAATACTGAA
GCTTTATTAC TACGATTTCT TGATGTTAAA TTTAAGTTGC TTAAAATATT AGCAAGTCTG TTTATGATTT TTTTTCTTGA
CCGTTATCTT TTAACATTTT ATGTGAGTGT GGCAAAACTA TCCTTAAAAA CATGGTCAAT TGAAGTCATT GTTTGTTAGA
AGTACAATCG TTACACTTTT TTGACTCTGG ACCACCAATT TGAATATCAT ATGGCTAATG CTATGAAGCA TGGAATCATG
CTCTCTTACT AGAAATTTTT TGAAATGGTA TGCGTATTGT TACGTCAAAA GGAAAAAGGA ATTATTTCCT TTAATGAAAA
TTACATGTTT GGATAATGAC TACTGATATG AAAAAATTTC CCAGTTTGTT ATTAGAATTC AAAGATCTAA GTTTGTGTAA
CCTTGCATCT AGTGTTATGA GTTATTCCGT TTGATTTATT TTTTTATTTT TATTTTTTTT TAATCCTTCT ATGGATGGTT
CTATTTCGGC AGTTTTGCTC AAGTCGCTGC TGCAGCTCAA GCTGGTGCAT CTGTTATTCA AATTTTTGTT GGTCGTATAA
GGGTAATTTC TTTCGTTATT TGTGTCATAA GAGTGTTTAA CAGGTTAAGT TTTAGGGTAT TCTTTTTAAA CTTCGTAATT
TTTCAGGATT GGGCACGTAA TCATTCTGGT GACGCAGAGA TAGAATCTGC CCAGCTAAGA GGAGAGGATC CAGGGTTGGC
ATTAGTATGT TCTTCAATAA TACTCTTTTG TTAATTGCCT ATTGCTCTAT TCTTAGAATT GAAATTTGTT TATTTTTGTG
AATACTAACT TATAGAGCTT TTGATCAAAT AAAAATTAAC TTATAAAACT CCTGGTGAAA ATGTAGATAT AGAGGTAATT
TATTTTTTCA CAGTTTAAGT CAGTAATACT GGTATATGAT TTGTGGAAAA CAGCTTGGCT ATTGCAAGAA TCAAATCTTT
ACTAAAAATA GTTATGATGA TCACCAACAA AACCTTTGCT TGAAATCATT ATTATTGTTT CAGGTGACAA AAGCTTACAA
TTATATTCAC AAATATCGAC ATAAGTCAAA GTTGATGGCA GCCGCTGTTC GCAACAAACA GGATCTATTT AGTCTTCTGG
GGTATTCGAA GACTTCCTTT CAGTCAGATC CAATTTAATA CCTGATCGAA GTTTTATTTG TATGATATAC TATCAATTTA
TTTTCTTTTT CCTCCTTGTC TAGGGTTGAC TATATCATCG CTCCATTAAA GGTATTGCAG TCTCTCAAAG AGTCTGTTGC
TTCTCCTGAT GAGAAGTACT CTTTTGTTAG GAGGTTATCC CCTCAGTCTG CTGCAACGTA CCAATTTCGT GAGGAAGAGG
TATGGTTTCA GCTTCTGATT TCATTTGCTT TTCACCTTTA CAAAGTAGAA ATTTAGTTGA AACTGCAAAA TTAAGTTGGC
GTCGATATAT GTCCGCCCAC CTCATAATTT CAAAAACATG GTGGCATGCC CATTGCTCCT TTTACTCAAA TGGAAAATAA
AAAACCAATT ACACGAAGAG CAACTTCAAA CTGCATGTTG TCTGTTCTCT AATGTTGTTA TTTCAACAAG GTGTTAAGTC
TCCCATCAAG AGGCTCAGGA AAATCGAAAT CAACCGACCC TAACTTCGGT CACTTTATTG GCTTGAAAGT TTGATTTCTA
TCAGTGCCAA TGTAATACGA AATGTGAGCG TACTGCCATC CACAATAACG TTATTTCCAG TTTCCTTTCT CACCTCAATC
ATCAGCCGGG ATAGTTTAAA TAAAATCTCG TTTTTGTTCT GAAGTTTGTC ATATTTGCTA ATTAATCGGA CAGCTTTACT
AATAATTTTT CATTCTTTTA TATTCAGCTT GTTCAATGGG ACCATGATAG CATGGTAAAT GCCATGGGGC CTGCAGCTGT
GCAGCTTTTG GCTGCTGGAC TGGATGGCCA TGCTGATCAA GCAAAGCGGG TGGAAGATCT ATTTGAGAAA ATTTGGCCAC
CACCAAATGT ATGATTTGAC GTCTGTCTTT TTGTCGAAAG AGTGTTTTTC CTGATGGAAT AAACGTAGTA GCGAACAGAT
GAAGGGGATA TTCCGTTTTT CTCTTTCCCT CTGACCTTTG AACCCTTAAA CAATTTCCTT AATATATAAA GCACGCGATT
CCTAAATGCA CTTCTGG

>Vigan.01G380500.01
TATTGCTTAA AAACTGTTAC AAAGATAGGT AGCAGAGAAA AAAAAAAATA TAAATCTGAC ACGATTGGTG CCAAAATTAG
AGAGGTGAAT GTGTTTTGGA TGTGGATCTG GCCTATTACT TTCAGTTATT AATTCAGAAG TGGTAACGGA GCTTACCGTC
TTAATCTCAA TCTCAAAATG TCACTCACTT TGCAAACTCC GTCCTCGACG ACGCTCTCTT CTGCATCTTC CATTCACTCG
ACAACAAGAA GATCGACTTC TTACTTCTCG ATTCGTTCCA CGCTTTCCCC AAAAACTATC CATTGCAATT CCCGCAGGTC
CTACCCTCAA ACTCTCGCTT CTGCTTCCTC TATCAATATC GCTTCCACCA CTGAACTCGA TGCTGTGTCC GCCTTCAGCG
AGATCGTCCC CGACACCGTC GTTTTCGATG ATTTCGAGAA ATTTCCTCCA ACTGCTGCTA CTGTCAGTTC ATCGCTTCTC
TTGGGAATAT GTGGCCTTCC AGATACCATT TTTAGGAATG CTGTGGAAAT GGCTTTGGCT GATTCTGAGT GTTATGGAAT
TGAAAATCCT AATGCACGAG TGTCTTGTTT TGTCAACAAG GCTTTCGCGA ATGTGGGTAG TGACTTGGCA AAGCTTGTCC
CTGGCCGTGT TTCCACAGAG GTGGATGCGC GGCTTGCTTA TGACACGCAC GCCATTATCA GGAAGGTGCA TGACTTGTTA
AAGTTGTACA ATGATAGCAA TGTACCTCCT GAACGTCTGT TGTTTAAAAT TCCTTCAACT TGGCAAGGAA TAGAGGCTGC
AAGGTTGCTG GAATCTGAAG GCATACAAAC ACATTTGACC TTTGTCTATA GTTTTGCTCA AGTCGCTGCT GCAGCTCAAG
CTGGTGCATC TGTTATTCAA ATTTTTGTTG GTCGTATAAG GGATTGGGCA CGTAATCATT CTGGTGACGC AGAGATAGAA
TCTGCCCAGC TAAGAGGAGA GGATCCAGGG TTGGCATTAG TGACAAAAGC TTACAATTAT ATTCACAAAT ATCGACATAA
GTCAAAGTTG ATGGCAGCCG CTGTTCGCAA CAAACAGGAT CTATTTAGTC TTCTGGGGGT TGACTATATC ATCGCTCCAT
TAAAGGTATT GCAGTCTCTC AAAGAGTCTG TTGCTTCTCC TGATGAGAAG TACTCTTTTG TTAGGAGGTT ATCCCCTCAG
TCTGCTGCAA CGTACCAATT TCGTGAGGAA GAGCTTGTTC AATGGGACCA TGATAGCATG GTAAATGCCA TGGGGCCTGC
AGCTGTGCAG CTTTTGGCTG CTGGACTGGA TGGCCATGCT GATCAAGCAA AGCGGGTGGA AGATCTATTT GAGAAAATTT
GGCCACCACC AAATGTATGA TTTGACGTCT GTCTTTTTGT CGAAAGAGTG TTTTTCCTGA TGGAATAAAC GTAGTAGCGA
ACAGATGAAG GGGATATTCC GTTTTTCTCT TTCCCTCTGA CCTTTGAACC CTTAAACAAT TTCCTTAATA TATAAAGCAC
GCGATTCCTA AATGCACTTC TGG

>Vigan.01G380500.01
ATGTCACTCA CTTTGCAAAC TCCGTCCTCG ACGACGCTCT CTTCTGCATC TTCCATTCAC TCGACAACAA GAAGATCGAC
TTCTTACTTC TCGATTCGTT CCACGCTTTC CCCAAAAACT ATCCATTGCA ATTCCCGCAG GTCCTACCCT CAAACTCTCG
CTTCTGCTTC CTCTATCAAT ATCGCTTCCA CCACTGAACT CGATGCTGTG TCCGCCTTCA GCGAGATCGT CCCCGACACC
GTCGTTTTCG ATGATTTCGA GAAATTTCCT CCAACTGCTG CTACTGTCAG TTCATCGCTT CTCTTGGGAA TATGTGGCCT
TCCAGATACC ATTTTTAGGA ATGCTGTGGA AATGGCTTTG GCTGATTCTG AGTGTTATGG AATTGAAAAT CCTAATGCAC
GAGTGTCTTG TTTTGTCAAC AAGGCTTTCG CGAATGTGGG TAGTGACTTG GCAAAGCTTG TCCCTGGCCG TGTTTCCACA
GAGGTGGATG CGCGGCTTGC TTATGACACG CACGCCATTA TCAGGAAGGT GCATGACTTG TTAAAGTTGT ACAATGATAG
CAATGTACCT CCTGAACGTC TGTTGTTTAA AATTCCTTCA ACTTGGCAAG GAATAGAGGC TGCAAGGTTG CTGGAATCTG
AAGGCATACA AACACATTTG ACCTTTGTCT ATAGTTTTGC TCAAGTCGCT GCTGCAGCTC AAGCTGGTGC ATCTGTTATT
CAAATTTTTG TTGGTCGTAT AAGGGATTGG GCACGTAATC ATTCTGGTGA CGCAGAGATA GAATCTGCCC AGCTAAGAGG
AGAGGATCCA GGGTTGGCAT TAGTGACAAA AGCTTACAAT TATATTCACA AATATCGACA TAAGTCAAAG TTGATGGCAG
CCGCTGTTCG CAACAAACAG GATCTATTTA GTCTTCTGGG GGTTGACTAT ATCATCGCTC CATTAAAGGT ATTGCAGTCT
CTCAAAGAGT CTGTTGCTTC TCCTGATGAG AAGTACTCTT TTGTTAGGAG GTTATCCCCT CAGTCTGCTG CAACGTACCA
ATTTCGTGAG GAAGAGCTTG TTCAATGGGA CCATGATAGC ATGGTAAATG CCATGGGGCC TGCAGCTGTG CAGCTTTTGG
CTGCTGGACT GGATGGCCAT GCTGATCAAG CAAAGCGGGT GGAAGATCTA TTTGAGAAAA TTTGGCCACC ACCAAATGTA
TGA

>Vigan.01G380500.01
MSLTLQTPSS TTLSSASSIH STTRRSTSYF SIRSTLSPKT IHCNSRRSYP QTLASASSIN IASTTELDAV SAFSEIVPDT
VVFDDFEKFP PTAATVSSSL LLGICGLPDT IFRNAVEMAL ADSECYGIEN PNARVSCFVN KAFANVGSDL AKLVPGRVST
EVDARLAYDT HAIIRKVHDL LKLYNDSNVP PERLLFKIPS TWQGIEAARL LESEGIQTHL TFVYSFAQVA AAAQAGASVI
QIFVGRIRDW ARNHSGDAEI ESAQLRGEDP GLALVTKAYN YIHKYRHKSK LMAAAVRNKQ DLFSLLGVDY IIAPLKVLQS
LKESVASPDE KYSFVRRLSP QSAATYQFRE EELVQWDHDS MVNAMGPAAV QLLAAGLDGH ADQAKRVEDL FEKIWPPPNV
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