GBrowse Details

Vigan.01G365800.01

Basic Information:
Name: Vigan.01G365800.01
Multiple alignment
Variant Information
Position: Chr01:50272237..50273855 (+ strand)
Length: 1619
Functional Information:
Description: Similar to uncharacterized LOC101203266. [XP_004167591.1, Cucumis sativus]
InterPro: TLDc (IPR006571)
Interferon-induced protein 44 family (IPR024644)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,1.74,40.88,0.34,6.98,0.13,5.69
Arabidopsis thaliana homolog: AT1G32520.1
Automatic updates:
Name: BT091859 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-20C14 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:50272237..50272448 (+ strand)
Length: 212
Type: five_prime_UTR
Position: Chr01:50272449..50272620 (+ strand)
Length: 172
Type: CDS
Position: Chr01:50272748..50273265 (+ strand)
Length: 518
Type: CDS
Position: Chr01:50273266..50273855 (+ strand)
Length: 590
Type: three_prime_UTR

>Vigan.01G365800.01 class=Sequence position=Chr01:50272237..50273855 (+ strand)
TTAGGGATAT GATTTTTCAT TGTCATGTAC ATTTGAGCCA AGTTTTGTGT AGAAATGGGT CCAAGCAAAT GAGAGCCAGT
GAGAGATTTT ATTCCAAAAA CATAGGGTGG AAAAGGGGTA GAAGATATTT TGTGAGGAAA TATGGATAAG ATGTTGAATT
GTGGTTCAAA AGAGGAAGAG AGAAGAGATA GTGCTTAGTT GGTGATCTGT GGATGGCATA TTGCATTCCA AACTCACCAT
CACTCCAGGG TTGGAAGACA AGCACAAATG GCTTATTTGG TTGGAACATA GGCAAGAAGA ATGTTAATGA CAAACCTCAG
ACTAAATACT ATGATATTGA TCTCACTTTC TCAACTTCTC TGGTGGACAA AACATTTTTG AGAGGTACTG CTACGATCCC
TTTTTCTATC TGCCTAATTA CTGAACAACA CATAGAATCA TAGTACTATT TCTATATACT GTTACAATGA TCCATGAACT
CAAAATATAT ATTTGACATA ATTTTTATCA GGGAAGGAGC TAAAATGCTG CTATAGGGCT TCGATTGATG GGTTCAGTGC
AACAAATTTC CACGAATGCT GTGACTTCAA GGGGCCATGC GTGATAATCG GCTACACAAA CAAGTCTTTC AAGTTTGGTG
CATTTAACCC TGAAGGGTAT AGAAGCACAG ATGACTACTA TGATACATTT GATGCCTTCC TATTTTACTG GCTAGACAAT
GAAACTAAGC CCATTATTTT GCCCAAAGTT GGTGGAAGTG GTGCAGCCCT GTTTGATTAT GCACGTGGTG GCCCACAATT
TGGGGCAGAT GGGCTTCTCA TAGGGCCCCC ATTGGCCCCA GTTATGGGGG GCTTTGCTGG GCCTGATACC AATTCTGGCA
TTGGTGACTT GAGACAAGCG AAGTCTAGAT TGGGATTGTC TTATGCCAAA AGAGAGGATG GGAAGGAGTC TATATTTGGT
GATGAGTCAA GGGCAACCCT TCAAGAAGTG GAAGTCTTTT GTAGTCCTCA AATTGCAAGC TTATACTAGA ACTTCATAAA
GAGGGTAAGT AACACTATAC TATAATAGTA TATTTTGTGC TGTCCACGTC TATAATGAGT CAATATCTGT GTATTGTAAT
ATTTTGTGCA TGAATGAATA CGTAACCACT TGGGTCTTTG ATCTCATCTT CCACTACAAG GATTCACCAA GAAATTTATG
AAGTACCAAT ACCTGCTGAA TAAATTAACT TCCACTGAGG ATGCTTTTCA CTCATTTCGT TTTCAACTCC TCCAATGGAG
AATAATGGTT GAAGGATTAT TTATTTCTTA AACAACCACA TTAAAGCAAT GCTTAGCGAG GAAAAAGTCA CATTAGTACT
TTAAGAGTTA ACTGTATGTT GGTGGCCAGA ATCTGTCACA ATCTTTATCA GATTATAGGT CGTTTTGTGT TTGAAGAGTT
CTGGAATTGT TGCCCCTTTA TGAAAGTGTT CCTGAAAATC TTGCATTGCT GACATGCATT TTCGCTTGAG AATGAGAAGA
TGCTGAGGGA ACAATATGCT TACTTCAGAA GAAGGCATAG ATGTGTGTCA TTGTTTACTT CTGTACTTCC ACAAAATATT
AGTCATTTTT ATCTGTTAA

>Vigan.01G365800.01
TTAGGGATAT GATTTTTCAT TGTCATGTAC ATTTGAGCCA AGTTTTGTGT AGAAATGGGT CCAAGCAAAT GAGAGCCAGT
GAGAGATTTT ATTCCAAAAA CATAGGGTGG AAAAGGGGTA GAAGATATTT TGTGAGGAAA TATGGATAAG ATGTTGAATT
GTGGTTCAAA AGAGGAAGAG AGAAGAGATA GTGCTTAGTT GGTGATCTGT GGATGGCATA TTGCATTCCA AACTCACCAT
CACTCCAGGG TTGGAAGACA AGCACAAATG GCTTATTTGG TTGGAACATA GGCAAGAAGA ATGTTAATGA CAAACCTCAG
ACTAAATACT ATGATATTGA TCTCACTTTC TCAACTTCTC TGGTGGACAA AACATTTTTG AGAGGGAAGG AGCTAAAATG
CTGCTATAGG GCTTCGATTG ATGGGTTCAG TGCAACAAAT TTCCACGAAT GCTGTGACTT CAAGGGGCCA TGCGTGATAA
TCGGCTACAC AAACAAGTCT TTCAAGTTTG GTGCATTTAA CCCTGAAGGG TATAGAAGCA CAGATGACTA CTATGATACA
TTTGATGCCT TCCTATTTTA CTGGCTAGAC AATGAAACTA AGCCCATTAT TTTGCCCAAA GTTGGTGGAA GTGGTGCAGC
CCTGTTTGAT TATGCACGTG GTGGCCCACA ATTTGGGGCA GATGGGCTTC TCATAGGGCC CCCATTGGCC CCAGTTATGG
GGGGCTTTGC TGGGCCTGAT ACCAATTCTG GCATTGGTGA CTTGAGACAA GCGAAGTCTA GATTGGGATT GTCTTATGCC
AAAAGAGAGG ATGGGAAGGA GTCTATATTT GGTGATGAGT CAAGGGCAAC CCTTCAAGAA GTGGAAGTCT TTTGTAGTCC
TCAAATTGCA AGCTTATACT AGAACTTCAT AAAGAGGGTA AGTAACACTA TACTATAATA GTATATTTTG TGCTGTCCAC
GTCTATAATG AGTCAATATC TGTGTATTGT AATATTTTGT GCATGAATGA ATACGTAACC ACTTGGGTCT TTGATCTCAT
CTTCCACTAC AAGGATTCAC CAAGAAATTT ATGAAGTACC AATACCTGCT GAATAAATTA ACTTCCACTG AGGATGCTTT
TCACTCATTT CGTTTTCAAC TCCTCCAATG GAGAATAATG GTTGAAGGAT TATTTATTTC TTAAACAACC ACATTAAAGC
AATGCTTAGC GAGGAAAAAG TCACATTAGT ACTTTAAGAG TTAACTGTAT GTTGGTGGCC AGAATCTGTC ACAATCTTTA
TCAGATTATA GGTCGTTTTG TGTTTGAAGA GTTCTGGAAT TGTTGCCCCT TTATGAAAGT GTTCCTGAAA ATCTTGCATT
GCTGACATGC ATTTTCGCTT GAGAATGAGA AGATGCTGAG GGAACAATAT GCTTACTTCA GAAGAAGGCA TAGATGTGTG
TCATTGTTTA CTTCTGTACT TCCACAAAAT ATTAGTCATT TTTATCTGTT AA

>Vigan.01G365800.01
ATGGCATATT GCATTCCAAA CTCACCATCA CTCCAGGGTT GGAAGACAAG CACAAATGGC TTATTTGGTT GGAACATAGG
CAAGAAGAAT GTTAATGACA AACCTCAGAC TAAATACTAT GATATTGATC TCACTTTCTC AACTTCTCTG GTGGACAAAA
CATTTTTGAG AGGGAAGGAG CTAAAATGCT GCTATAGGGC TTCGATTGAT GGGTTCAGTG CAACAAATTT CCACGAATGC
TGTGACTTCA AGGGGCCATG CGTGATAATC GGCTACACAA ACAAGTCTTT CAAGTTTGGT GCATTTAACC CTGAAGGGTA
TAGAAGCACA GATGACTACT ATGATACATT TGATGCCTTC CTATTTTACT GGCTAGACAA TGAAACTAAG CCCATTATTT
TGCCCAAAGT TGGTGGAAGT GGTGCAGCCC TGTTTGATTA TGCACGTGGT GGCCCACAAT TTGGGGCAGA TGGGCTTCTC
ATAGGGCCCC CATTGGCCCC AGTTATGGGG GGCTTTGCTG GGCCTGATAC CAATTCTGGC ATTGGTGACT TGAGACAAGC
GAAGTCTAGA TTGGGATTGT CTTATGCCAA AAGAGAGGAT GGGAAGGAGT CTATATTTGG TGATGAGTCA AGGGCAACCC
TTCAAGAAGT GGAAGTCTTT TGTAGTCCTC AAATTGCAAG CTTATACTAG 

>Vigan.01G365800.01
MAYCIPNSPS LQGWKTSTNG LFGWNIGKKN VNDKPQTKYY DIDLTFSTSL VDKTFLRGKE LKCCYRASID GFSATNFHEC
CDFKGPCVII GYTNKSFKFG AFNPEGYRST DDYYDTFDAF LFYWLDNETK PIILPKVGGS GAALFDYARG GPQFGADGLL
IGPPLAPVMG GFAGPDTNSG IGDLRQAKSR LGLSYAKRED GKESIFGDES RATLQEVEVF CSPQIASLY*