GBrowse Details

Vigan.01G362600.01

Basic Information:
Name: Vigan.01G362600.01
Multiple alignment
Variant Information
Position: Chr01:49739046..49741103 (+ strand)
Length: 2058
Functional Information:
Description: Similar to 1-aminocyclopropane-1-carboxylic acid synthase. [Q9SEE8, Vigna radiata var. radiata]
GO: Biological Process: biosynthetic process (GO:0009058)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: pyridoxal phosphate binding (GO:0030170)
InterPro: Aminotransferases, class-I, pyridoxal-phosphate-binding site (IPR004838)
Aminotransferase, class I/classII (IPR004839)
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (IPR015421)
Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (IPR015422)
Pyridoxal phosphate-dependent transferase (IPR015424)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.09,0.00,0.09,60.70,0.00,1.49,0.74
Arabidopsis thaliana homolog: AT2G22810.1, AT3G49700.1, AT4G08040.1, AT4G26200.1, AT4G37770.1, AT5G65800.1
Automatic updates:
Name: NM_001317276 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata 1-aminocyclopropane-1-carboxylate synthase 3 (LOC106767925), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:49739046..49739215 (+ strand)
Length: 170
Type: five_prime_UTR
Position: Chr01:49739216..49739362 (+ strand)
Length: 147
Type: CDS
Position: Chr01:49739467..49739759 (+ strand)
Length: 293
Type: CDS
Position: Chr01:49739881..49740844 (+ strand)
Length: 964
Type: CDS
Position: Chr01:49740845..49741103 (+ strand)
Length: 259
Type: three_prime_UTR

>Vigan.01G362600.01 class=Sequence position=Chr01:49739046..49741103 (+ strand)
TTTCGACTTC CACTATAAAT ATATAACCAA CCTTACTCCT CTTTTCACAC ACCAATTTCT CTTCAACATT CCACTCCAAA
TATTCTTCTC TTCTCCTTCC TTCGCCCATC AACTCAGTTG CCATCACCTC TTCATTCCTT CCTACCATCC CAAACACACA
AACATACAAA ATGAGGCTCT TGTCCACAAT AGCAACGTGC AATAGTCACG GCCAAGACTC TTCATACTTT TTAGGATGGC
AGGAATACGA GAAAAACCCT TACGATGAAC TCCATAACCC CAAAGGAATT ATCCAGATGG GTTTAGCGGA GAATCAGGTT
AGACATTTTT TTTTCTTTTT TCAAAATAAT AACCACTATC TTTATTCTAT TACTTACTTC AAAACTTGTT TCACTCACAA
AATTTTTCTT TTGATTTGCA GCTCTCTTTC GACCTCCTAG AGTCGTGGCT GGCTAAGAAC CCTGACGTCG CCGGCTTCAA
ACGAGATGGC AAATCCATAT TTAGAGAACT GGCTCTTTTC CAGGACTACC ACGGTCTCCC TTCCTTCAAA AAGGCATTGG
TAGATTTCAT GTCTGAAATC AGAGGAAACA AAGTCACTTT CGACCCCAAC CACATCGTTC TCACTGCCGG TGCCACTTCC
GCAAACGAAA CCTTAATGTT CTGTCTCGCC GAACAAGGAG ACGCATTCCT CCTTCCGACT CCTTATTACC CAGGGTGCGT
ATATTTTTTT ATCTTAATCT TATCGCTTAT ATTCCACTTC ATGCTACAAA ATTTTACGTG ACTTTATTTT TATATTTTTT
TATGCATTCC CCTGACCTTG CTTTATTCTA TACAGATTTG ACAGAGACCT CAAGTGGAGA ACCGGTGCTG AGATTGTTCC
AATACAATGC ACAAGTTCTA ACAACTTCCA AATTACGGAG CCAGCTCTGA AACAGGCTTA CGAGGAGGCC CGCAAGCGCA
ACCTGAGAGT GAAAGGCGTT CTGGTGACAA ACCCGTCAAA CCCGCTAGGC ACCACCATGT CTCGGAGTGA ATTGAACCTT
CTCGTCGACT TCATCAAAGA GAAAAGCGAC ACGCATTTGA TAAGCGACGA GATATACTCC GGGACGGTTT TTAGCTCTCC
AGGCTTCGTC AGTGTCATGG AAATCCTCAA GGAGCGAAAC GATACTGACG AAATCTGGAA CAGAGTTCAC GTTGTCTACA
GTCTATCCAA AGACTTGGGT TTGCCGGGTT TCCGCGTCGG CGCTATCTAC TCGGAAAACG ACACCGTGGT TGCCGCCGCA
ACGAAGATGT CGAGCTTTGG GTTGGTCTCT TCGCAGACGC AGTACCTCCT CTCTGCCATG CTGGGTGACA AGAAGTTCAC
CCGAAACTAC ATCGTCGAGA ATCAGAAGAG GCTTAAGCGA CGACAGAGAA TGATGGTTTC GGGGTTACAA AAAGCTGGTA
TTTCTTGCCT GGAGAGCAAT GCCGGGTTGT TTTGCTGGGT GGACATGAGA CACCTTTTGC ATTCGAACAC GTTCGAAGCT
GAGATGGAGC TGTGGAAGAA AATAGTGTAC CAAGTTGGGT TAAACATTTC CCCTGGGTCG TCGTGCCATT GCACCGAACC
AGGGTGGTTC CGTGTGTGTT TCGCTAACAT GTCCGAGGAG ACTCTCGCCT TGGCCATGAA ACGCTTGAAG AACTTCGTCG
TTGAGTCCAC CTGCACTCAG AGGAGTGCTC TGTTCAACGG AACCTCGAAA AGAAAGTCTC TCACAAAGTG GGTTTTCCGG
TTATCGTCTC GCGACCATCG TGAACAGGAA GAACGGTAGC CTGGTCTTAG TCCATGCGTG TTCGCTCATG CATAAATTCA
TTTCAATTTC TTTTTCTTTT CCCTTTTTCT GCCTCCCCAA TATTTTTGGC GGAGTAGTTC GAAAAATTCC CAATTATTTT
TCTTCATTTT TTTGTGATAA AATTAATGTA GAGAGAGAAA GAAAAAAAAG CACTCGGTCC ATGTGGACGT GTAGTGGTTG
GGTTTCTAGT CAGCCTTGTT TGTATAAGTT GTTCCATATC TCAGTCATTA ATTCCCTA

>Vigan.01G362600.01
TTTCGACTTC CACTATAAAT ATATAACCAA CCTTACTCCT CTTTTCACAC ACCAATTTCT CTTCAACATT CCACTCCAAA
TATTCTTCTC TTCTCCTTCC TTCGCCCATC AACTCAGTTG CCATCACCTC TTCATTCCTT CCTACCATCC CAAACACACA
AACATACAAA ATGAGGCTCT TGTCCACAAT AGCAACGTGC AATAGTCACG GCCAAGACTC TTCATACTTT TTAGGATGGC
AGGAATACGA GAAAAACCCT TACGATGAAC TCCATAACCC CAAAGGAATT ATCCAGATGG GTTTAGCGGA GAATCAGCTC
TCTTTCGACC TCCTAGAGTC GTGGCTGGCT AAGAACCCTG ACGTCGCCGG CTTCAAACGA GATGGCAAAT CCATATTTAG
AGAACTGGCT CTTTTCCAGG ACTACCACGG TCTCCCTTCC TTCAAAAAGG CATTGGTAGA TTTCATGTCT GAAATCAGAG
GAAACAAAGT CACTTTCGAC CCCAACCACA TCGTTCTCAC TGCCGGTGCC ACTTCCGCAA ACGAAACCTT AATGTTCTGT
CTCGCCGAAC AAGGAGACGC ATTCCTCCTT CCGACTCCTT ATTACCCAGG ATTTGACAGA GACCTCAAGT GGAGAACCGG
TGCTGAGATT GTTCCAATAC AATGCACAAG TTCTAACAAC TTCCAAATTA CGGAGCCAGC TCTGAAACAG GCTTACGAGG
AGGCCCGCAA GCGCAACCTG AGAGTGAAAG GCGTTCTGGT GACAAACCCG TCAAACCCGC TAGGCACCAC CATGTCTCGG
AGTGAATTGA ACCTTCTCGT CGACTTCATC AAAGAGAAAA GCGACACGCA TTTGATAAGC GACGAGATAT ACTCCGGGAC
GGTTTTTAGC TCTCCAGGCT TCGTCAGTGT CATGGAAATC CTCAAGGAGC GAAACGATAC TGACGAAATC TGGAACAGAG
TTCACGTTGT CTACAGTCTA TCCAAAGACT TGGGTTTGCC GGGTTTCCGC GTCGGCGCTA TCTACTCGGA AAACGACACC
GTGGTTGCCG CCGCAACGAA GATGTCGAGC TTTGGGTTGG TCTCTTCGCA GACGCAGTAC CTCCTCTCTG CCATGCTGGG
TGACAAGAAG TTCACCCGAA ACTACATCGT CGAGAATCAG AAGAGGCTTA AGCGACGACA GAGAATGATG GTTTCGGGGT
TACAAAAAGC TGGTATTTCT TGCCTGGAGA GCAATGCCGG GTTGTTTTGC TGGGTGGACA TGAGACACCT TTTGCATTCG
AACACGTTCG AAGCTGAGAT GGAGCTGTGG AAGAAAATAG TGTACCAAGT TGGGTTAAAC ATTTCCCCTG GGTCGTCGTG
CCATTGCACC GAACCAGGGT GGTTCCGTGT GTGTTTCGCT AACATGTCCG AGGAGACTCT CGCCTTGGCC ATGAAACGCT
TGAAGAACTT CGTCGTTGAG TCCACCTGCA CTCAGAGGAG TGCTCTGTTC AACGGAACCT CGAAAAGAAA GTCTCTCACA
AAGTGGGTTT TCCGGTTATC GTCTCGCGAC CATCGTGAAC AGGAAGAACG GTAGCCTGGT CTTAGTCCAT GCGTGTTCGC
TCATGCATAA ATTCATTTCA ATTTCTTTTT CTTTTCCCTT TTTCTGCCTC CCCAATATTT TTGGCGGAGT AGTTCGAAAA
ATTCCCAATT ATTTTTCTTC ATTTTTTTGT GATAAAATTA ATGTAGAGAG AGAAAGAAAA AAAAGCACTC GGTCCATGTG
GACGTGTAGT GGTTGGGTTT CTAGTCAGCC TTGTTTGTAT AAGTTGTTCC ATATCTCAGT CATTAATTCC CTA

>Vigan.01G362600.01
ATGAGGCTCT TGTCCACAAT AGCAACGTGC AATAGTCACG GCCAAGACTC TTCATACTTT TTAGGATGGC AGGAATACGA
GAAAAACCCT TACGATGAAC TCCATAACCC CAAAGGAATT ATCCAGATGG GTTTAGCGGA GAATCAGCTC TCTTTCGACC
TCCTAGAGTC GTGGCTGGCT AAGAACCCTG ACGTCGCCGG CTTCAAACGA GATGGCAAAT CCATATTTAG AGAACTGGCT
CTTTTCCAGG ACTACCACGG TCTCCCTTCC TTCAAAAAGG CATTGGTAGA TTTCATGTCT GAAATCAGAG GAAACAAAGT
CACTTTCGAC CCCAACCACA TCGTTCTCAC TGCCGGTGCC ACTTCCGCAA ACGAAACCTT AATGTTCTGT CTCGCCGAAC
AAGGAGACGC ATTCCTCCTT CCGACTCCTT ATTACCCAGG ATTTGACAGA GACCTCAAGT GGAGAACCGG TGCTGAGATT
GTTCCAATAC AATGCACAAG TTCTAACAAC TTCCAAATTA CGGAGCCAGC TCTGAAACAG GCTTACGAGG AGGCCCGCAA
GCGCAACCTG AGAGTGAAAG GCGTTCTGGT GACAAACCCG TCAAACCCGC TAGGCACCAC CATGTCTCGG AGTGAATTGA
ACCTTCTCGT CGACTTCATC AAAGAGAAAA GCGACACGCA TTTGATAAGC GACGAGATAT ACTCCGGGAC GGTTTTTAGC
TCTCCAGGCT TCGTCAGTGT CATGGAAATC CTCAAGGAGC GAAACGATAC TGACGAAATC TGGAACAGAG TTCACGTTGT
CTACAGTCTA TCCAAAGACT TGGGTTTGCC GGGTTTCCGC GTCGGCGCTA TCTACTCGGA AAACGACACC GTGGTTGCCG
CCGCAACGAA GATGTCGAGC TTTGGGTTGG TCTCTTCGCA GACGCAGTAC CTCCTCTCTG CCATGCTGGG TGACAAGAAG
TTCACCCGAA ACTACATCGT CGAGAATCAG AAGAGGCTTA AGCGACGACA GAGAATGATG GTTTCGGGGT TACAAAAAGC
TGGTATTTCT TGCCTGGAGA GCAATGCCGG GTTGTTTTGC TGGGTGGACA TGAGACACCT TTTGCATTCG AACACGTTCG
AAGCTGAGAT GGAGCTGTGG AAGAAAATAG TGTACCAAGT TGGGTTAAAC ATTTCCCCTG GGTCGTCGTG CCATTGCACC
GAACCAGGGT GGTTCCGTGT GTGTTTCGCT AACATGTCCG AGGAGACTCT CGCCTTGGCC ATGAAACGCT TGAAGAACTT
CGTCGTTGAG TCCACCTGCA CTCAGAGGAG TGCTCTGTTC AACGGAACCT CGAAAAGAAA GTCTCTCACA AAGTGGGTTT
TCCGGTTATC GTCTCGCGAC CATCGTGAAC AGGAAGAACG GTAG

>Vigan.01G362600.01
MRLLSTIATC NSHGQDSSYF LGWQEYEKNP YDELHNPKGI IQMGLAENQL SFDLLESWLA KNPDVAGFKR DGKSIFRELA
LFQDYHGLPS FKKALVDFMS EIRGNKVTFD PNHIVLTAGA TSANETLMFC LAEQGDAFLL PTPYYPGFDR DLKWRTGAEI
VPIQCTSSNN FQITEPALKQ AYEEARKRNL RVKGVLVTNP SNPLGTTMSR SELNLLVDFI KEKSDTHLIS DEIYSGTVFS
SPGFVSVMEI LKERNDTDEI WNRVHVVYSL SKDLGLPGFR VGAIYSENDT VVAAATKMSS FGLVSSQTQY LLSAMLGDKK
FTRNYIVENQ KRLKRRQRMM VSGLQKAGIS CLESNAGLFC WVDMRHLLHS NTFEAEMELW KKIVYQVGLN ISPGSSCHCT
EPGWFRVCFA NMSEETLALA MKRLKNFVVE STCTQRSALF NGTSKRKSLT KWVFRLSSRD HREQEER*