GBrowse Details

Vigan.01G350500.01

Basic Information:
Name: Vigan.01G350500.01
Multiple alignment
Variant Information
Position: Chr01:48520780..48525879 (+ strand)
Length: 5100
Functional Information:
Description: Similar to iron/ascorbate oxidoreductase DDB_G0283291-like isoform X2. [XP_004509112.1, Cicer arietinum]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: iron ion binding (GO:0005506)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706)
InterPro: Isopenicillin N synthase (IPR002283)
Oxoglutarate/iron-dependent dioxygenase (IPR005123)
Non-haem dioxygenase N-terminal domain (IPR026992)
Isopenicillin N synthase-like (IPR027443)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:9.44,2.23,18.86,14.39,3.27,55.11,2.80,16.70
Arabidopsis thaliana homolog: AT3G50210.1
Automatic updates:
Name: NM_001255066 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max probable iron/ascorbate oxidoreductase DDB_G0283291-like (LOC100789278), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:48520780..48520916 (+ strand)
Length: 137
Type: five_prime_UTR
Position: Chr01:48520917..48520950 (+ strand)
Length: 34
Type: CDS
Position: Chr01:48521240..48521355 (+ strand)
Length: 116
Type: CDS
Position: Chr01:48522134..48522252 (+ strand)
Length: 119
Type: CDS
Position: Chr01:48522356..48522419 (+ strand)
Length: 64
Type: CDS
Position: Chr01:48522886..48522953 (+ strand)
Length: 68
Type: CDS
Position: Chr01:48523287..48523345 (+ strand)
Length: 59
Type: CDS
Position: Chr01:48523433..48523598 (+ strand)
Length: 166
Type: CDS
Position: Chr01:48523718..48523737 (+ strand)
Length: 20
Type: CDS
Position: Chr01:48523818..48523864 (+ strand)
Length: 47
Type: CDS
Position: Chr01:48525220..48525300 (+ strand)
Length: 81
Type: CDS
Position: Chr01:48525384..48525473 (+ strand)
Length: 90
Type: CDS
Position: Chr01:48525559..48525690 (+ strand)
Length: 132
Type: CDS
Position: Chr01:48525691..48525879 (+ strand)
Length: 189
Type: three_prime_UTR

>Vigan.01G350500.01 class=Sequence position=Chr01:48520780..48525879 (+ strand)
CACATTTTTG TAAATTTTTC CTAGGACAAC TCTGTTATAT CTGGTCAGAT ATAAATGTGC CACTTCACCT TCTTCCATAG
CTCACACCAA TCACAACAAG AGAAGTATTT TGAGTTTCAG AGAACCATAA TTCTCCTATG GCGACGAACT TTAGTTCCAT
CCCTGTAATT GGTAAACCCC CTTTCCACCA TAACCCTCAT TATCGTTACT TTCATCTTTT CCTCAATTCT ATCTTACGTA
TTCATACTCT TAAATTCTGT TTTCGTTTGA TAACATATAT ATACTTTGGT TTATCGGAAT TTATCTAAAC ATGTTACGAT
GGCATTTGCT TCGGATGGTG TGAAGTGGAG AATTCGGGAG TAAAATATTC AGTTTAGAAC TCAGAAGGAA CATTTTGTAT
TTTGGTGTGC TAGGTTCAGG ATCTGATAAC TAAGAATAGT TTTTTATGAC GGTGATGCAG ATATTAGTCC ACTTTTGGCT
AAGGCAGATG ATCCCAAAAT GGCCGAGGAC CCTGGTGTAC TCGAGGTTGT AAGACAATTG GATAAGGCTT GTACAGAGGC
AGGCTTCTTC TACGTGGTAT TTGTCTGTTG CATCTATTAA CCCCTTTTCT CTTCTATGGT TTCTTTACGC ATTTCGATGC
AAGAGAGCTT TGAAGCAAGA AATTCTTCCA CAATCATATG TATAAACTCT TTTTTTAAAG GAACTTATTA TAGACTTTTT
TTCTTAAATT TCTCTTTTAT CGCATTATAT ATCTTACAAT TCTATCAGTT TTTTTCTCTT TATATATATT TCTCGGCATT
CATGAAAAAG TTTCTAGTTA TTTTTTTATA TTTTGAATTG AAAGTCAAAT TGATACAACC TTGCATAAAT TTCAGTGCGT
CTACTACAAC TTCTTCTAAG AATAAGATGT TTTGAACTTC ATGTAGATTC CAAATATAAT AAAATAGTGG TTCCATTGCT
AGAGTACGAC ATATAGCTTA TATATCTAGA AGATTGAAAT GATAAAAGAA ATCTGATGGC TCACAGTAGA TGATTATACC
TTTGATTTCG GATACCTAGG TTAATTTGAT AAATAACGTT TATGGAAGCT TAAACCAAAC TATATTGCTA CCAATAGGCT
TTGCTCTGAA CAGAATTCTT CAGTTTAACT CAAAAATTGA CTACTCTCTC ATTTCTTGAG AGTCTGTTTC GTGAATAGGT
TTATTGTACT AGTAATATTG CATAGAATAT TAATATCAAT CCATGAATGT TTCATCTCCA TTTATATCCC TGCGATCAAG
TTGTTGCTAC TGAAAATATG GCACTTAGGT CATTTTGTGT CTAACGTTCA AACCCTGCGA TCCTTGATTG ACAGAAAGGA
CATGGTGTTC CGGAGACTCT CCTCAAAGAA GTTAGAGATG TAACGCGCGG ATTCTTTGAA CTTCCATATG AAGAAAAGGC
AAAAATCCAA ATGACTCCGG CTGCTGGATA CAGGTTTGCT TGGTTTACGT CGATTTACTT TGTATATAAG TTTCAGTTCC
GATCATGAGG TTTATGCATC AAATTTCTAC TGATAGTAAC TTGATGTCTA ATGCAGAGGT TATCAAAGGA TTGGACAAAA
TGTAACCAAA GGTGCACCTG ACATACATGA AGCTATTGAT GTAAGTCCTA TAGTTACTTG GCATAAAAGA GGTTGACACC
CTTACAAAAT TATAACCACT TGTAAGTATT TTAATACAAA TTACTAATAC ATTATTATAT TGTTAGAGTA GGTTGTAAAT
TAAATGTATT TTGTTTTGTA TGGTTTCAAA GTATAATTTT GGTTACGTTT TTTTCGGGTA TACATGTCAC AGAACTTCCA
CGTTGAAATT TTTTAATATC ATTTGCATTA GGCTCATCTC AGTGCAATTT ATAGTCAAGT ATAATTTTAT TTCCCTAAAA
GTGGCAACCT GTAACTCTTG CGTAATATAG CTCATGGATC AATCAAGGTA TTTAACATAC ATGGTCTGAT TTCGTCAATA
TTTCATTTTC TTTTCTGATT GGAGTCTGGC TTAGCTGATC CAGAATTCAC TCTGATTCTA GTGATTCTAT AAAGCAACAA
ATGACCCCTT TAATTTCCTT TAACAGTGCT ATAGAGAAGT GACCAAGGGC ATGTATGGAG ATCTGGGCAA AACTATGGAA
GGAAGCAACC AGTGGTACTT AGAAATAGGG ATTTTCTGTT TATTACTGCG TGTGTTCCTC CACAAACATA CTTCAATATT
TAGCTAAAAA TCAGCTCGAA TTTCATATAT ACTTTTAATC CTGAATTTCT CATTAACTTG GAAGCTTCAT TGAATTGGAT
TTATAGTCTA TGGATACTTT AGCATGATTG ATGCTCTTCT CTGATCTGGT TCTGTTACTC TAGCATTTGA TTTACTGGAC
AAGGGAGTTG GATTTTGGAG TATTAGCATT CAGAAAGAAG ACTTTCTGTT GCCAGATACT TACATCATTC GGTTTGACCC
TCTTCAGTTT TTGTGTTCAC CATGCAGGCC ACAATATCCT CAACCATTCA AAGTTCTTAT GGAGGAGTAT ATTCGTCTCT
GCACAGGCAT GTATTTTACT CATCCACTCT TTTTTTCCAT CATGTTTTAC AGTTAAATTC TTGATTCCTC ACACAGTTCC
TTTGTTAGAG CAGATCTTGC AAGGAAAATT ATGCGTGGAA TTGCTTTAGG ATTAGGTGGG TCACCTGATG AATTCGAAGG
TCAAAGAGCT GGGGATCCAT TTTGGGTAAT GCGGCTCATT GGATACCCAG GTGTATCATC TGTGAATGGA ACACATGTTC
TTAAAAATGA CATTGGATGG TAATGAAATC CTGGAACTGG TTTTTCCAAA TTTTGCCAGT CTTTAATTAC TTGGATTGCT
GATACCTTTT CCTTTGTTAC TTATTCTTCT CCAATTCCTT GAATCAAAAT AAACCCAGTG GAGCGCACAC TGATTACGGT
ATACCTGTAC CTTTGCATTA TTATAAGTCG AGAATATCTG CCTGGTCATT GTCCGTGATT TTAGATGTTG TGTAACAGGT
TTATTGACAT TGCTGAACCA AGATGACGAT ATAAACGCAC TCCAGGTATG CACTTATTTA TGTCCCTTTT GTATTTTAAG
ATATACTCGA ACTCCTCGTT TATTGCATGC AGTTATTGAT TTGACCTCTA CTCTTGTTGC AGTCAATCTT GTAACCATGC
AATTATAAAC CTAAATTTGG TAGAAATTAT TACTTGAACC ACCTGTTTTT TGGTCTCCAC TAATCTTTAA TTAATATTTA
CTAATTGTTG CTTAAAGATA GACTAACCAC GTAATGTAAT TTGCAAATGT AGGGGTTCCT TACAGTTTTA AATATCTGTC
AGTGGTCAGT AGCTTCAGAG CAGATCTGTT GAAATCCCAT TTCCTCTGTT GGACTATATT TCTTGAATAA AATGAGTTTT
GCTGAAGTAG TTGGGATGGG AATGTAGGAC AGGGTCACGA GGGTTGGCCT TTAGTTCATA GGAAAAGTGT AGAAGAGCTG
AATATTTTAA CTTGTGGGTC CCTTTAGGTC TAGTTTATAT AACTTGTAGA TCATGCGAGT AGGACAGACT AATTCGTATA
AAAATTTTAC AATAAAAAGT TAGTTCTCTT TTATTTTTTA ACATTCTTAC TTGCATTACT ATTGGTTCTC ATTTCCATAA
TAAGTATAGG AATAGTCTTT TGCTAGGAAA TGTAGAAGCA ATTATTTATA CTTCTAGTTG GAAGTATAAA TTTTATGAGT
GTAATAAAAT CTTTTTTAAC TTGTCTTATA TTACTTTTAT TTTAAAACCA TACTCTCATT CTTTAAATGT ACGCAAATTA
TAAAAGAGAA TATTATAATT ATGAAAAAGT GGAAGATAAA TTTCATCTAA GACTATATCC AATGTTATTG AAATGGAAAC
AAGCAAAATG ATGGTTAATT ACTATAATTT TTTAGTAGTT TAAACTATAA TTTATTTGTA TGTTTCCTTG TCAAAGATTA
ATTTAACTTT AATATATTTA TTTAATATAG TTGTTTATTT AACTTATTTC AATTTTATTA TCAATTATAA ACTCATGGTT
CAACAAATAT ATATATATAT AAAGACATGA ATCAATTGAA ACAAGATTAT TGTTGCAACA TTTGTATTCA AACTAGCGTG
CACACCTGTA GGCCAATCAT TATGGAGGGT GAACCAATAA AACTAGCTCA AATTCTTATA TGAACCAAAC ACTTCCGGTT
CGCCTTTTGC GAGGGCCAGC CAATCCGTAG AAGTAGTTGA TTCTTTCAAC CAATACCTAT TGACTTAAGT TTGCGTTCTG
TATTTTATCT TCGATAATAT TATATATGGT CCTGCAACTG TAACTTGAAT CGAAAGACGT CCAACTAAAA CACCTTGAGG
CAAATTACGC ACCATATCTG TGCTGTGAAA ATTGTTTCAG GTGAGAAACC TATCTGGCGA ATGGATATCA GCACCTCCAG
TTCCTGGGTC ATTTGTATGC AACATTGGTG ACATGCTAAA GGTATCTTAT ACTTAATCTG TTCATCCTAT AAATACAATC
TGACATGGGT AGATAATCTC ACTAAGTGTG GAAGAGAACT GCAGATATAC TCCAATGGAC TGTACGAGTC AACTTTGCAC
AGGGTTATAA ACGACAACTC AAAATACAGA GTCAGCGTAG CATACTTCTA CGAGGTTAGC CACATTTAAA ATTTACATGT
TTCGTCCTTT TCACGTGTTT GTTTCGGTCT TGTCACAAAT ATCGCTGCTG AATGGACAGA CAAACTTCGA TACTGCGGTA
GAGCCGTTGG ACACCCATAA AACGAGGGCA AATGGCAACA GGAAGTTCGA AAGACCAGTC TATGGAGAGC ATTTAATTGG
CAAGGTTCTC ACAAACTTTG TTCTTGAGTA ACCTTGTTTT CCTTGTTCTA ATGTGCAAAT AAGCCAGCCA TCTAGATCTT
GTCTAGCAGG CTTCTAGCTT CTATTAGACC TACCACTGCG GATCCTGTAC TATTTTAAGT GCACACAATA ATGTTATTTA
TCAATGCCTC CATTCTCAAA ATTTATCACC CGAGTTCACA ACTAGGACTT GTGAATCCAC 

>Vigan.01G350500.01
CACATTTTTG TAAATTTTTC CTAGGACAAC TCTGTTATAT CTGGTCAGAT ATAAATGTGC CACTTCACCT TCTTCCATAG
CTCACACCAA TCACAACAAG AGAAGTATTT TGAGTTTCAG AGAACCATAA TTCTCCTATG GCGACGAACT TTAGTTCCAT
CCCTGTAATT GATATTAGTC CACTTTTGGC TAAGGCAGAT GATCCCAAAA TGGCCGAGGA CCCTGGTGTA CTCGAGGTTG
TAAGACAATT GGATAAGGCT TGTACAGAGG CAGGCTTCTT CTACGTGAAA GGACATGGTG TTCCGGAGAC TCTCCTCAAA
GAAGTTAGAG ATGTAACGCG CGGATTCTTT GAACTTCCAT ATGAAGAAAA GGCAAAAATC CAAATGACTC CGGCTGCTGG
ATACAGAGGT TATCAAAGGA TTGGACAAAA TGTAACCAAA GGTGCACCTG ACATACATGA AGCTATTGAT TGCTATAGAG
AAGTGACCAA GGGCATGTAT GGAGATCTGG GCAAAACTAT GGAAGGAAGC AACCAGTGGC CACAATATCC TCAACCATTC
AAAGTTCTTA TGGAGGAGTA TATTCGTCTC TGCACAGATC TTGCAAGGAA AATTATGCGT GGAATTGCTT TAGGATTAGG
TGGGTCACCT GATGAATTCG AAGGTCAAAG AGCTGGGGAT CCATTTTGGG TAATGCGGCT CATTGGATAC CCAGGTGTAT
CATCTGTGAA TGGAACACAT GTTCTTAAAA ATGACATTGG ATGTGGAGCG CACACTGATT ACGGTTTATT GACATTGCTG
AACCAAGATG ACGATATAAA CGCACTCCAG GTGAGAAACC TATCTGGCGA ATGGATATCA GCACCTCCAG TTCCTGGGTC
ATTTGTATGC AACATTGGTG ACATGCTAAA GATATACTCC AATGGACTGT ACGAGTCAAC TTTGCACAGG GTTATAAACG
ACAACTCAAA ATACAGAGTC AGCGTAGCAT ACTTCTACGA GACAAACTTC GATACTGCGG TAGAGCCGTT GGACACCCAT
AAAACGAGGG CAAATGGCAA CAGGAAGTTC GAAAGACCAG TCTATGGAGA GCATTTAATT GGCAAGGTTC TCACAAACTT
TGTTCTTGAG TAACCTTGTT TTCCTTGTTC TAATGTGCAA ATAAGCCAGC CATCTAGATC TTGTCTAGCA GGCTTCTAGC
TTCTATTAGA CCTACCACTG CGGATCCTGT ACTATTTTAA GTGCACACAA TAATGTTATT TATCAATGCC TCCATTCTCA
AAATTTATCA CCCGAGTTCA CAACTAGGAC TTGTGAATCC AC

>Vigan.01G350500.01
ATGGCGACGA ACTTTAGTTC CATCCCTGTA ATTGATATTA GTCCACTTTT GGCTAAGGCA GATGATCCCA AAATGGCCGA
GGACCCTGGT GTACTCGAGG TTGTAAGACA ATTGGATAAG GCTTGTACAG AGGCAGGCTT CTTCTACGTG AAAGGACATG
GTGTTCCGGA GACTCTCCTC AAAGAAGTTA GAGATGTAAC GCGCGGATTC TTTGAACTTC CATATGAAGA AAAGGCAAAA
ATCCAAATGA CTCCGGCTGC TGGATACAGA GGTTATCAAA GGATTGGACA AAATGTAACC AAAGGTGCAC CTGACATACA
TGAAGCTATT GATTGCTATA GAGAAGTGAC CAAGGGCATG TATGGAGATC TGGGCAAAAC TATGGAAGGA AGCAACCAGT
GGCCACAATA TCCTCAACCA TTCAAAGTTC TTATGGAGGA GTATATTCGT CTCTGCACAG ATCTTGCAAG GAAAATTATG
CGTGGAATTG CTTTAGGATT AGGTGGGTCA CCTGATGAAT TCGAAGGTCA AAGAGCTGGG GATCCATTTT GGGTAATGCG
GCTCATTGGA TACCCAGGTG TATCATCTGT GAATGGAACA CATGTTCTTA AAAATGACAT TGGATGTGGA GCGCACACTG
ATTACGGTTT ATTGACATTG CTGAACCAAG ATGACGATAT AAACGCACTC CAGGTGAGAA ACCTATCTGG CGAATGGATA
TCAGCACCTC CAGTTCCTGG GTCATTTGTA TGCAACATTG GTGACATGCT AAAGATATAC TCCAATGGAC TGTACGAGTC
AACTTTGCAC AGGGTTATAA ACGACAACTC AAAATACAGA GTCAGCGTAG CATACTTCTA CGAGACAAAC TTCGATACTG
CGGTAGAGCC GTTGGACACC CATAAAACGA GGGCAAATGG CAACAGGAAG TTCGAAAGAC CAGTCTATGG AGAGCATTTA
ATTGGCAAGG TTCTCACAAA CTTTGTTCTT GAGTAA

>Vigan.01G350500.01
MATNFSSIPV IDISPLLAKA DDPKMAEDPG VLEVVRQLDK ACTEAGFFYV KGHGVPETLL KEVRDVTRGF FELPYEEKAK
IQMTPAAGYR GYQRIGQNVT KGAPDIHEAI DCYREVTKGM YGDLGKTMEG SNQWPQYPQP FKVLMEEYIR LCTDLARKIM
RGIALGLGGS PDEFEGQRAG DPFWVMRLIG YPGVSSVNGT HVLKNDIGCG AHTDYGLLTL LNQDDDINAL QVRNLSGEWI
SAPPVPGSFV CNIGDMLKIY SNGLYESTLH RVINDNSKYR VSVAYFYETN FDTAVEPLDT HKTRANGNRK FERPVYGEHL
IGKVLTNFVL E*