GBrowse Details

Vigan.01G350000.01

Basic Information:
Name: Vigan.01G350000.01
Multiple alignment
Variant Information
Position: Chr01:48463410..48467156 (- strand)
Length: 3747
Functional Information:
Description: Similar to Uncharacterized protein. [C6T174, Glycine max]
GO: Molecular Function: acid-amino acid ligase activity (GO:0016881)
Molecular Function: SUMO ligase activity (GO:0019789)
InterPro: Ubiquitin-conjugating enzyme, E2 (IPR000608)
Ubiquitin-conjugating enzyme/RWD-like (IPR016135)
Ubiquitin-conjugating enzyme, active site (IPR023313)
SUMO-conjugating enzyme Ubc9 (IPR027230)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:41.26,34.45,76.37,103.84,84.86,104.12,59.21,96.34
Automatic updates:
Name: NM_001248661 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500268 (LOC100500268), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:48463410..48463670 (- strand)
Length: 261
Type: three_prime_UTR
Position: Chr01:48463671..48463733 (- strand)
Length: 63
Type: CDS
Position: Chr01:48464289..48464402 (- strand)
Length: 114
Type: CDS
Position: Chr01:48464488..48464640 (- strand)
Length: 153
Type: CDS
Position: Chr01:48466654..48466737 (- strand)
Length: 84
Type: CDS
Position: Chr01:48466823..48466891 (- strand)
Length: 69
Type: CDS
Position: Chr01:48466892..48467156 (- strand)
Length: 265
Type: five_prime_UTR

>Vigan.01G350000.01 class=Sequence position=Chr01:48463410..48467156 (- strand)
TAAAAAGCAA AAAACATAGA AACGACAACA CCGGTGGCTG CCCCCGAGAA TCTAAGATGG AATCAGGACC GTACGTTCGA
TGGGAGGCAG AGCAATAAAA AATGCCGCGT TTGCCCACAA CCACAACGCA ATGCCAAGGA GGTAAGGGAG AAAGGAAGGA
AGGAAGTGAG AAAAGTGCTT ATTGAACTGG GAAACACTGA GCCGACTCGG AGCGAGTGAA GTGTTGCGTT GCGTTGCGTT
GCGTGACTCG AGAGAGATAG AGAAGATGTC TGGTGGTATT GCTCGTGGAC GTCTCACCGA AGAGCGCAAG TCGTGGCGGA
AGAACCATCC TCATGTCCGT ACAACTCTTT CTAATCGATT CCTTCCTTTC TCAGTGGGGA CGTTTTTGTT TTCACCTTTT
TCTCTCTTTT GTGATTTAGG GTTTTGTTGC GAAGCCGGAG ACGCTGCCTG ACGGAACCGT GAACTTGATG GTGTGGCATT
GCACAATTCC TGGAAAGGCT GGGGTGTGTT TTCGCGTTCT TCTTTTATAC GTTACGCGTT TCCTGATTGT TATGAATCGA
ATTCTACAAA TTTCATTTTC TTTGCTTTTG ATTATGAAAT CACAGCTGTT CTTGTAATGT TTATCTCTGT TGGTACTCCG
AAGCAGCGAA TCTCCTTTGC CTACTCTTCG TCCTTCTTCG TACTCTTGAA TTGAGGCGGG CTATTCTCAA CCTTAAAAGT
TGGTCAATTG CTAATTGCAT CTTGTTTTAC GTTTACATCC CTTTAGATTT TTTTTTCCTA AAAATACCTT TTTCTTTTCC
AGAAATTAGT TTCCAAAACA CATTTTAAGA TGTTGATATT ATTTTCAAAA TTCAGTTTTC AGACTGTAAT AAATACATTC
AATAAACTAC ATTGATGTAA TGTCTGCTTT TGCGAAGGGC AGTGTTTGAG GTTTGGTTCT CATTAGGATT GATCTAATGG
TAGGGGTTTT GTTTAGTATG ATGAAACGTT GGTTTTAACC TCAGTGTGAC CACTGTACAC GAAAAAATGT GGTTGAGGTT
TGGTTAGCTG AACCAGTTGG ATTATTTTGC CATCAACAGC GTGAAGAGTT GTCTTCGAGG TTTGGTTGAT TGATCCTGTG
ATTATTGTCT CTGATTTCAT GTTCTGGAAT GGGGATTTAT AATTAAAAAA GGGGACGCAT CTGCAATCAA CTAACTCATT
AGGTGAGGAT TGCCCTAGCC TATTTTGGGC ATACCCATGG TCTATATGGA ATCTCGACGC ACCTTAGATG GGACATTTGG
AGCATGGACT CACGCCTAGT GTGTACATCT GGAACGATGA GAAGGAGATA GTAGTATTGA CTGTTTAATA TTGCCTAAAG
AAAGTGGTGA GGGATGGTCC ATACCGTCTT GAATTTTGGT TGCGTCTAAA TCGACTCAAT AATTTCACAA GATGAAGGTT
GCTCAAGCCT TTATAATCTC TATTTTGACC ATATCTAAGT TGACATAGGA CCTCAATACT TACATCCCTG CTGGGTTTCT
CAATCTACTT CTTCTCATAC CTCAAAAGAT TCCGTAACAC ATTTGCTTAT TACCTACATG AACTTGGTTG ACAAACCATT
CCCTAGTTGT TATTTGTTTC CTCATAAAAG CAAATCCATC TCCTTCTCAC ATGGTGCATA TCTCTCACTT ATCTTTCAGT
TTTTTGACGT ATTTGTTACG TCTTAATGTT AATCACAACC AAGGATTTAG ATTGTGGTTG GGGTTTTGTT GCAAACCTTG
ATGTTGTGGG AAATTTCAGA TAAATGTAGT CAATTTGGTT ACAATTGAAG TTACAGAGAC TCCTTTAACT TGATGTTGTG
GCAAACTTGT GGCTTTGGAC CATTTTTAAA ACATAGATAT GAATTTGCTG ATAAAATATG AAACAATCTA TAGCAATCTT
CAAAGTTAGG ATTTGGACTA AACTGTATGC ATATTGAGTA TTGACTCTCA CTTTGGTAGA CATGACTTTT TATATTCCCA
GGTATTCACT GAGGGGTTAG ACTCAAGGGG TTTTGACATC ATAAGAAGAG AGGTGCCAAA ACGTGCATGG TTCATTGGAA
AATATTTAAC CATTTCTGCA TCAAAACATG ATCATCTATT AAATCATTCA TTAAAGCTGT TCAAACAGCC CCCTATAATA
TCCTACAAGA ATGGGAAAAT GCAAAGACAT GCATTAATGC TATAGTTCAT TATACAGGAA TCTGAATGAA ATGATATGTC
TGTATTAATG CTGTCCCGTT GCGTCATAGT TTTGCAAATG AAATTTTTGG TACGAGTGAG ATACTTTGGT TTAGAAATCG
AAAGTGAGAA ATTTCTTCTT TTGCATTTGA TATATCTTAT CAAAAGGTAA CTCAAATACT TTATGGTTGA AAGTTTATTG
GAAATGAATC ATATCTTGCT TGTGTACCTT GGATGAATTT GCAAAAGAAT TAAGCAACTT GTTGAGTAAT GAGCCTGGTA
TTTACTTCAT ATTAATTTAC GTTTCATTTG CTTCAGACTG ATTGGGAGGG TGGCTACTTC CCACTTACGT TGCACTTTAG
TGAAGACTAC CCTAGCAAGC CGCCAAAGTG TAAATTCCCA CAAGGGTTCT TCCATCCAAA TGTTTATCCT TCCGGGACTG
TGTGCCTGTC TATACTTAAC GAGGATAGTG TAAGTACATC TCTATTGGTA ATTGGATGAC TGCTTGAAAC TAATTTGTGA
GCAAACAGAT TCATAGGTTC ATTATTATTT ACAGGGGTGG AGACCAGCCA TAACAGTAAA GCAAATTCTT GTGGGTATCC
AAGACTTGCT TGACCAGCCA AATCCTGCTG ATCCTGCCCA GACAGAAGGC TATCATCTAT TCATCCAGGC ATTTATCCCT
TTTTTATTTT ATTAATATTT CTTGAAGTGT AAATAATGTA TGATTTTATT ATAAACCAAC TAACCAAGGC AAAGTAGTAA
TATGTTTTGA GATGTTATTT ATCCTCCGTT CTAAGGATTG GTATTATGAC AGCTCGCATA CTTGAATGTT AGGACTTTGA
CCATTGTGTA TGATGAATAG GTGTTGACAA ATTGTTATTT GATGTTGTAA TATGATTCTA TTTGGATAAA ATTTTCTGTA
AACATATGTA AGAGAAAGAA GTAAAGTAAA TTGTATTTCT TGCATAAGTT AAAATCAACC TATGCAAAAG ATGCTAAGTG
TTCAATCGTC TAATGTTTTC AAAAGTTGAT GTGTATAAGT TGATTTTAGT ATGTAAAGAA TTCAATTCAA TTTATTATAT
TCATCTTTTA TGTGTTTATG GATAAGATTA TCCTTATAAG ACATATTTTT ACTCTTTTCT TTCTATACAG TGAAGTGGGT
GGATGGAGAC TTCATTGTCT TAATATCTAA GGTTAGTTTT AACATGGCGA TACTTTTTTG CAGGATGCAG CAGAGTACAA
GAGAAGGGTC CGGCAGCAGG CAAAGCAATA CCCACCTCTT CTCTAATGTT GCCGTCGCAT CAGCTAAATT TATAAACTAT
TTTTATTATG GCAGATGCTT CATCTTTTGT TCCGCATTGA ATCTGTTTTT GTCATTGTGA TTAATGGCTG CCACAACATG
CAGACATGAA TGTTTTAGCT ATTTATGGTT ACCCCCCGAT CTGGAAGAAG TGTTAATATA TAAAAAAATG TGAAAGCAAC
CAATGAATAC TTGTTGGAGA CATGTGCCTG ATGTTTGCTG CTACTTTTTT ATATGAATGG ATATAAT

>Vigan.01G350000.01
TAAAAAGCAA AAAACATAGA AACGACAACA CCGGTGGCTG CCCCCGAGAA TCTAAGATGG AATCAGGACC GTACGTTCGA
TGGGAGGCAG AGCAATAAAA AATGCCGCGT TTGCCCACAA CCACAACGCA ATGCCAAGGA GGTAAGGGAG AAAGGAAGGA
AGGAAGTGAG AAAAGTGCTT ATTGAACTGG GAAACACTGA GCCGACTCGG AGCGAGTGAA GTGTTGCGTT GCGTTGCGTT
GCGTGACTCG AGAGAGATAG AGAAGATGTC TGGTGGTATT GCTCGTGGAC GTCTCACCGA AGAGCGCAAG TCGTGGCGGA
AGAACCATCC TCATGGTTTT GTTGCGAAGC CGGAGACGCT GCCTGACGGA ACCGTGAACT TGATGGTGTG GCATTGCACA
ATTCCTGGAA AGGCTGGGAC TGATTGGGAG GGTGGCTACT TCCCACTTAC GTTGCACTTT AGTGAAGACT ACCCTAGCAA
GCCGCCAAAG TGTAAATTCC CACAAGGGTT CTTCCATCCA AATGTTTATC CTTCCGGGAC TGTGTGCCTG TCTATACTTA
ACGAGGATAG TGGGTGGAGA CCAGCCATAA CAGTAAAGCA AATTCTTGTG GGTATCCAAG ACTTGCTTGA CCAGCCAAAT
CCTGCTGATC CTGCCCAGAC AGAAGGCTAT CATCTATTCA TCCAGGATGC AGCAGAGTAC AAGAGAAGGG TCCGGCAGCA
GGCAAAGCAA TACCCACCTC TTCTCTAATG TTGCCGTCGC ATCAGCTAAA TTTATAAACT ATTTTTATTA TGGCAGATGC
TTCATCTTTT GTTCCGCATT GAATCTGTTT TTGTCATTGT GATTAATGGC TGCCACAACA TGCAGACATG AATGTTTTAG
CTATTTATGG TTACCCCCCG ATCTGGAAGA AGTGTTAATA TATAAAAAAA TGTGAAAGCA ACCAATGAAT ACTTGTTGGA
GACATGTGCC TGATGTTTGC TGCTACTTTT TTATATGAAT GGATATAAT

>Vigan.01G350000.01
ATGTCTGGTG GTATTGCTCG TGGACGTCTC ACCGAAGAGC GCAAGTCGTG GCGGAAGAAC CATCCTCATG GTTTTGTTGC
GAAGCCGGAG ACGCTGCCTG ACGGAACCGT GAACTTGATG GTGTGGCATT GCACAATTCC TGGAAAGGCT GGGACTGATT
GGGAGGGTGG CTACTTCCCA CTTACGTTGC ACTTTAGTGA AGACTACCCT AGCAAGCCGC CAAAGTGTAA ATTCCCACAA
GGGTTCTTCC ATCCAAATGT TTATCCTTCC GGGACTGTGT GCCTGTCTAT ACTTAACGAG GATAGTGGGT GGAGACCAGC
CATAACAGTA AAGCAAATTC TTGTGGGTAT CCAAGACTTG CTTGACCAGC CAAATCCTGC TGATCCTGCC CAGACAGAAG
GCTATCATCT ATTCATCCAG GATGCAGCAG AGTACAAGAG AAGGGTCCGG CAGCAGGCAA AGCAATACCC ACCTCTTCTC
TAA

>Vigan.01G350000.01
MSGGIARGRL TEERKSWRKN HPHGFVAKPE TLPDGTVNLM VWHCTIPGKA GTDWEGGYFP LTLHFSEDYP SKPPKCKFPQ
GFFHPNVYPS GTVCLSILNE DSGWRPAITV KQILVGIQDL LDQPNPADPA QTEGYHLFIQ DAAEYKRRVR QQAKQYPPLL
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