GBrowse Details

Vigan.01G348700.01

Basic Information:
Name: Vigan.01G348700.01
Multiple alignment
Variant Information
Position: Chr01:48301210..48302833 (+ strand)
Length: 1624
Functional Information:
Description: Similar to Uncharacterized protein. [V7CCN7, Phaseolus vulgaris]
GO: Molecular Function: O-methyltransferase activity (GO:0008171)
InterPro: O-methyltransferase, family 3 (IPR002935)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:43.02,11.42,7.08,32.27,48.76,1.22,67.54,113.21
Automatic updates:
Name: NM_001249311 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max O-methyltransferase SOMT-9 (SOMT-9), transcript variant 1, mRNA.
PubMed ID: 16777424 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:48301210..48301400 (+ strand)
Length: 191
Type: five_prime_UTR
Position: Chr01:48301401..48301490 (+ strand)
Length: 90
Type: CDS
Position: Chr01:48301574..48301653 (+ strand)
Length: 80
Type: CDS
Position: Chr01:48301776..48301920 (+ strand)
Length: 145
Type: CDS
Position: Chr01:48302030..48302161 (+ strand)
Length: 132
Type: CDS
Position: Chr01:48302272..48302565 (+ strand)
Length: 294
Type: CDS
Position: Chr01:48302566..48302833 (+ strand)
Length: 268
Type: three_prime_UTR

>Vigan.01G348700.01 class=Sequence position=Chr01:48301210..48302833 (+ strand)
CTAGAAATGA GTGGTGTCTG AAATAAACAT GTTTTTTTTT TCTTGATTTG GTAAAGTGAG CAGAACATGG GTAGGTATCG
TATACTACCA CTTGTCCAAA GGGAAGAAAC ATTTCCTGCT AAAAAAGGAT AAGCAGAACA ATAATTTCAA GGCTGAAGGA
AGCTTGAGCT AGTAAGAGAT TCAGCAGAGA CATGGCTAAT GAAGATGAAC CCAAAAACCA CCTCTTGGGC ATCAGAAATC
TCTCTCATAA GACTCTCCTT CAGAGCGATG CACTCTATCA GGTCAATTCA GCAACTCTTT TATTCTCTCT TTCGAATTGT
AACCATATTT TCGCTTGAAA CCAACATACG TACTATTATT GCAGTACATA CTTGAAACCA GTGTTTATCC AAGAGAGCAC
AAGTGCTTGA AGGAGATCCG CGAGATGACA GAAAAACACC CTCGGTAAAA TCATGGTCAT TTTGCATTTC CTAATAAAAA
TTATGCAGTC TCTAAAACAA ACCGTGCTTG TTCCAAATTC TTGGGAAATA CTTGTTGAAT AGTTTGGTAA TGATATTTAA
AACCAGGAAC ATAATGGCTA CACCACCAGA CGAAGGACAA TTTCTGAGCA TGCTTATTAA GCTCATTAAT GCCAAGAACA
CCTTGGAAAT TGGTGTATAC ACCGGTTACT CTCTTCTTTC CACTGCCCTG GCTCTTCCCC CTGCTGGAAA GGTTATATCT
TTCTGCATAA TTCAACTTTA AATTATACCA TCATCATAAA AGTACTGAAT TTTATTTCAC ATAATATATA GTTTACAGCT
TTTGTAATTT TTTTTTTTAG ATCTTGGCTT TGGACGTGAA CCGCGAATAC TATGAATTGG GTTTGCCCAT CATTGAAAAA
GCTGGTGTCG CTCACAAGAT CGACTTCAGA GAAGGACCTG CTCTTCCTTT TCTTGACGAA CTGCTTAAAG ATGTGCGTGT
ACCGTTTCTT TATTTTAGAT AAAAGAAGAA GAAAAGGAAC TGTTTTGGTT TTATGAATTA GTCTATTCTT GATAGTTCAA
TCAATTCGTG TAAAATATGC AGGAAAATAA GAAGGGACAG TTCGATTTCG TTTTCGTGGA TGCTGATAAG AACAATTACT
TGAACTATCA CAAGAGAGTA ATTGATCTGG TGAAGGTGGG AGGTCTGATC GGATACGACA ACACCCTATG GGCTGGATCT
GTGGCCGCGC CTCCTGATGC ACCGTTGATG GATTACGTTA AACCTCTTCG CGGCTATGTG ATGGAGTTCA ACAAGTACCT
GGCACAAGAT TCAAGGATTG AGATTTGCCA GCTCCCCGTG GGTGATGGGA TTACCCTGTG CCGCCGCATC ATCTGATCAT
TTAATTTTTC TCTACGGATT AATTACTCAA TCAGGTTGCG TGAAGATAGC AGAATCCGGA TTCGGTTGTT TGGGTGTCTT
TGTTTGTTTC TTGCGGAAAC GATACAAATC AATGGTGGAA CCTGTAATAA GCTTTGGAAC AGTTGCGAAA TAATGATTTT
AATAATGGGC TAAATAACTT TTAGTTATAT GATTGTTGTT TTAATATTTA ATAATTCTTT AAGATTAAAT ATGTAATAAA
TTATATATTT TTGGTTTAAG ATCG

>Vigan.01G348700.01
CTAGAAATGA GTGGTGTCTG AAATAAACAT GTTTTTTTTT TCTTGATTTG GTAAAGTGAG CAGAACATGG GTAGGTATCG
TATACTACCA CTTGTCCAAA GGGAAGAAAC ATTTCCTGCT AAAAAAGGAT AAGCAGAACA ATAATTTCAA GGCTGAAGGA
AGCTTGAGCT AGTAAGAGAT TCAGCAGAGA CATGGCTAAT GAAGATGAAC CCAAAAACCA CCTCTTGGGC ATCAGAAATC
TCTCTCATAA GACTCTCCTT CAGAGCGATG CACTCTATCA GTACATACTT GAAACCAGTG TTTATCCAAG AGAGCACAAG
TGCTTGAAGG AGATCCGCGA GATGACAGAA AAACACCCTC GGAACATAAT GGCTACACCA CCAGACGAAG GACAATTTCT
GAGCATGCTT ATTAAGCTCA TTAATGCCAA GAACACCTTG GAAATTGGTG TATACACCGG TTACTCTCTT CTTTCCACTG
CCCTGGCTCT TCCCCCTGCT GGAAAGATCT TGGCTTTGGA CGTGAACCGC GAATACTATG AATTGGGTTT GCCCATCATT
GAAAAAGCTG GTGTCGCTCA CAAGATCGAC TTCAGAGAAG GACCTGCTCT TCCTTTTCTT GACGAACTGC TTAAAGATGA
AAATAAGAAG GGACAGTTCG ATTTCGTTTT CGTGGATGCT GATAAGAACA ATTACTTGAA CTATCACAAG AGAGTAATTG
ATCTGGTGAA GGTGGGAGGT CTGATCGGAT ACGACAACAC CCTATGGGCT GGATCTGTGG CCGCGCCTCC TGATGCACCG
TTGATGGATT ACGTTAAACC TCTTCGCGGC TATGTGATGG AGTTCAACAA GTACCTGGCA CAAGATTCAA GGATTGAGAT
TTGCCAGCTC CCCGTGGGTG ATGGGATTAC CCTGTGCCGC CGCATCATCT GATCATTTAA TTTTTCTCTA CGGATTAATT
ACTCAATCAG GTTGCGTGAA GATAGCAGAA TCCGGATTCG GTTGTTTGGG TGTCTTTGTT TGTTTCTTGC GGAAACGATA
CAAATCAATG GTGGAACCTG TAATAAGCTT TGGAACAGTT GCGAAATAAT GATTTTAATA ATGGGCTAAA TAACTTTTAG
TTATATGATT GTTGTTTTAA TATTTAATAA TTCTTTAAGA TTAAATATGT AATAAATTAT ATATTTTTGG TTTAAGATCG


>Vigan.01G348700.01
ATGGCTAATG AAGATGAACC CAAAAACCAC CTCTTGGGCA TCAGAAATCT CTCTCATAAG ACTCTCCTTC AGAGCGATGC
ACTCTATCAG TACATACTTG AAACCAGTGT TTATCCAAGA GAGCACAAGT GCTTGAAGGA GATCCGCGAG ATGACAGAAA
AACACCCTCG GAACATAATG GCTACACCAC CAGACGAAGG ACAATTTCTG AGCATGCTTA TTAAGCTCAT TAATGCCAAG
AACACCTTGG AAATTGGTGT ATACACCGGT TACTCTCTTC TTTCCACTGC CCTGGCTCTT CCCCCTGCTG GAAAGATCTT
GGCTTTGGAC GTGAACCGCG AATACTATGA ATTGGGTTTG CCCATCATTG AAAAAGCTGG TGTCGCTCAC AAGATCGACT
TCAGAGAAGG ACCTGCTCTT CCTTTTCTTG ACGAACTGCT TAAAGATGAA AATAAGAAGG GACAGTTCGA TTTCGTTTTC
GTGGATGCTG ATAAGAACAA TTACTTGAAC TATCACAAGA GAGTAATTGA TCTGGTGAAG GTGGGAGGTC TGATCGGATA
CGACAACACC CTATGGGCTG GATCTGTGGC CGCGCCTCCT GATGCACCGT TGATGGATTA CGTTAAACCT CTTCGCGGCT
ATGTGATGGA GTTCAACAAG TACCTGGCAC AAGATTCAAG GATTGAGATT TGCCAGCTCC CCGTGGGTGA TGGGATTACC
CTGTGCCGCC GCATCATCTG A

>Vigan.01G348700.01
MANEDEPKNH LLGIRNLSHK TLLQSDALYQ YILETSVYPR EHKCLKEIRE MTEKHPRNIM ATPPDEGQFL SMLIKLINAK
NTLEIGVYTG YSLLSTALAL PPAGKILALD VNREYYELGL PIIEKAGVAH KIDFREGPAL PFLDELLKDE NKKGQFDFVF
VDADKNNYLN YHKRVIDLVK VGGLIGYDNT LWAGSVAAPP DAPLMDYVKP LRGYVMEFNK YLAQDSRIEI CQLPVGDGIT
LCRRII*