GBrowse Details

Vigan.01G343800.01

Basic Information:
Name: Vigan.01G343800.01
Multiple alignment
Variant Information
Position: Chr01:47605636..47609456 (+ strand)
Length: 3821
Functional Information:
Description: Similar to Uncharacterized protein. [I1K1S1, Glycine max]
GO: Biological Process: protein folding (GO:0006457)
Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755)
Molecular Function: protein binding (GO:0005515)
InterPro: Tetratricopeptide TPR1 (IPR001440)
Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain (IPR002130)
Tetratricopeptide-like helical (IPR011990)
Tetratricopeptide repeat-containing domain (IPR013026)
Tetratricopeptide TPR2 (IPR013105)
Tetratricopeptide repeat (IPR019734)
Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site (IPR020892)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.18,11.66,15.28,5.77,22.25,14.65,12.03,13.72
Arabidopsis thaliana homolog: AT2G15790.1
Automatic updates:
Name: NM_001357085 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peptidyl-prolyl cis-trans isomerase GmCYP8 (GMCYP8), mRNA.
PubMed ID: 25348509 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:47605636..47605964 (+ strand)
Length: 329
Type: five_prime_UTR
Position: Chr01:47605965..47606135 (+ strand)
Length: 171
Type: CDS
Position: Chr01:47606224..47606724 (+ strand)
Length: 501
Type: CDS
Position: Chr01:47607014..47607101 (+ strand)
Length: 88
Type: CDS
Position: Chr01:47607204..47607256 (+ strand)
Length: 53
Type: CDS
Position: Chr01:47607745..47607846 (+ strand)
Length: 102
Type: CDS
Position: Chr01:47608201..47608276 (+ strand)
Length: 76
Type: CDS
Position: Chr01:47608875..47608912 (+ strand)
Length: 38
Type: CDS
Position: Chr01:47609011..47609064 (+ strand)
Length: 54
Type: CDS
Position: Chr01:47609065..47609456 (+ strand)
Length: 392
Type: three_prime_UTR

>Vigan.01G343800.01 class=Sequence position=Chr01:47605636..47609456 (+ strand)
AAGAATACCA GTGTACACTT ATCTGCATTT CTATATTTCT TTACAATTGA ACTAAACCAA ATGCAACAAA TTAGTTTTAA
CAGAACTAAA AGATTACTAA TTAAACTAGT GTATTTGCTG CTTTTCCTTA TTGTTGCGCA GACAAACTGG AGAAGAAAAG
GCGATCAGTG ACACGTGGAA TGGTTAACTG TATAAGTTTT GTCGTTCGCG GCACGAAAAC AAAGGAGTTT GAAATTAAAA
AGCGGGATTA GGGTTTTGTA CTCAACTTCC CTACCTATTT CATCTTCCTC TTTCCATTCT TGCTTTTCTC TCATCTTCAC
CTTCCCAAAA TGGTGAACCC TAAATGCTTC TTGGACATTA GTATCGCTGG CGAGTTAGAG GGTAGAATCG TTATCGAACT
TTTTCAGGAT GTGGTTCCCA AAACCGCGGA GAATTTCAGG GCCCTTTGCA CTGGCGAAAA GGGCATAGGA CCCAACACCA
ATGTCCCCCT TCACTATAAG GTCCTTTATT TTCTTCTTAG ACTTATTTTC TTGTTTATTA TCGTTCCAAT TCTGAAAGGT
TATTCTTTTT CTGCTACTGT TAATGCAGGG AGTATGTTTT CACCGTGTGA TCAAGGGGTT CATGATCCAA GGTGGCGACA
TCTCCGCTGG CGACGGCACA GGAGGGGAAT CTATATACGG CCTGAAGTTC GAGGATGAAA ACTTGGAGCT GAAGCACGAG
AGGAAGGGGA TGCTTTCCAT GGCCAATGCG GGACCCAACA CCAACGGTTC TCAGTTCTTC ATCACCACCA CACGCACCCC
TCACTTGGAC GGTAAACATG TCGTGTTCGG AAGAGTTGTT AAAGGAATGG GCGTTGTTCG CTCAGCAGAA CACATTGTTA
CTGGCGAAAA CGACCGACCC ACTCAGACTG TTGTAATCGA GGATTGCGGG GAAATTCCCG AAGGGCAAGA TGATGGAGTT
GTTAACTTCT TTAAGGATGG TGACACTTAT CCGGATTGGC CCGCAGATCT TGATGTCAAA CCTGATGAGC TTTCTTGGTG
GATGAGTGCT GTGGATTCTA TCAAGGCTCT GGGGAATGAG CAGTACAAGG TTAAAGCTTT TGTTTATTGT ATCTGTAACT
GTTATGATAT ATTGTAGTAA TTATTTGAGT GAAAAGTATA TGCATTTGTA TTTTAGTCTC CGATCAGATA CTCCTGGACA
AAATAAATTA TTGTTATCTT ATCTCAGTTT GACATGTATG CTAAATTTGT AAACTTTTAC TAATTATCTT GAAAATCACA
ACTGTTATAA TTGGATGACA GTAAATTTCT TTTATACTAA TAATTCTTAT ATATCAAGCT AATGTCTTAC TGTTACTTAC
CTGTTTCTCT CATAACAGAA GCAAGATTAT AAGATGGCAT TGAGAAAGTA TCGCAAAGCG TTGCGCTATT TGGATGTGTG
TTGGGAGAAG GACGACATTG ACCAAGGTCA GTGTCTCTGC ATTTTGGCTC TGGCTAGTGA AATATATTGG TACTTCTCTG
CTTCATCCTT TCTATCTCAC GTTTTTGCTC TTTCTTTTTA CTATGCAGAG AACAGTGCTT CATTAAGGAA GACAAAATCT
CAAATCTTTA CCAATAGTTC TGTAAGTAAC CAATACTGGC AAGACTAAAA AAATATTATT TAATGTCAAG GACCAGCTCA
GTAAAAATCT TAAGATATTT AGCTAGAGGC CCAGGAATGA TTTATATCTC TAGCTTTTGC TTATTGATGG GGAATCATTA
ATGATGCATA TTCTCTTAGA ACAGGCTGAG TGGTGATTTA TTGTTAACTC GAGAGATCAG GCTACTGCCT TGTGAATGCT
TGTTTTATTA GTGTGTGCAT GCATTTTATA TTAAACTTAC TCTCAGGTTT TAAGGGTGGG CGATTTGAGA ATGGAGATAA
TAGATATAAC CATGAAAATG TATTTAAATT GTTACCTTAG TGGGTCCGGG TCTGCTAGAA TCAACCAGAA GCCTTTCAAC
CCTCTTTATT TACTTTTCCA ATGTGTGGCC TTCATAAAAT ATGTCATGTA CTCGGACTCT TCATTCACCT TAAAACTAAT
GCTCTGTGTC CTGTTGTTTT ATTTCTTAGG CTTGTAAATT GAAAATAGGT GATCTACAAG GAGCACTACT GGATTCAGAC
TTTGCAATGC ATGATGGAGA TAATGCAAAA GCTCTGTTTC GAAAAGGCCA GGTTAGTTGA CATCTTCCAA TGAAGATAAT
AGGCTGATGA TGAAAGTTAT TGATACTGGC TAGTGAATTG TGTGCTCTGT AGAATGCTTT AATTTTACAT TTTGCTTTTA
AGTTTGACAT AATCCTTCCC AATTATTGCA ATTCGGTTTT GATTTTGGCT AATTTGGATT AGATCCATGC TATTAGGTGT
TTGGACTGTG TTCACATTCT TATTATGTCT GCTTATGTTA GTTGTTATAC CTTTCATTAC CTACTACGTA GGGGATAAAT
AATTCTTGTA CTGTGCTAGG TGAACCATTG TCTCATGTTT CATATCTTGT AATTTGTTGT TCATGTTTCG CTTGCTTAAT
CTCAGGCTTA TATGTTACTC AATGACCTGG ATTCTGCTGT TGAAAGCTTC AAGAAAGCAT TAGAGTTGGA GCCTAATGAT
GGTAGTTGTC TATTTAAATT CGTTGAGTGT TTATTTCATT CCTTCTTCAG CTCATGTCAT GCCAGCTTTG TAAAAAATGG
TTATCTTAAA AAATGGATTT GTTGTCAAGA AATGAACATC CCGGGTTCTT GATAAACTTG TTCGGGCTAA GAAGAATTTT
CTCATTTAGG ACCTTATTTT ATTCATACCA GGGTTGAAGT ACTTGAAGAG GAGATACAGT ACTAAAATGA GATCATGGTG
TAGTTGGCTA GCAAACTACT ATTTCCATTT CATTATGTTC GTCTTTAGTA CCTTTCAGTT TTCAGTATTT TAAAAAGCAT
CCTGTTTAGG CAAATAAATC TTCTGAATCA CATGTTTTCT GCAATCACCT GAGTCTGAAT ATGAAATCTC TTAAAAGGAA
AGTAACAATA TTCGTGAGAA TGAAATTAAT GTTTGCTTTA AAAAAAAGGG ATTCTCAATG TTATATATGA AACAAGTAAA
AATATAGAGA TCCTACTAAT CATTAGACCA TGACTCTTTG TTTTTAAAGT TTACTGGTAT TGTGAAGTTA GCCTATATTT
TTTAATTAAG CTTAATCCAC TTGTCACTCT GTTTCTCAGG AGGGATTAAA AAGGAGTATG CCACTGCCAG GAAAAAGGTC
AGGCATTTCA CCTATTTATT TCTTCTATCA TGTTACATGC CGTTTATTTC ACTGTGACAA AGGAAATTTA TTCTGATTAT
AATTTTTGGT TACAGGTTGC TGATAGACGT GATAGAGAGA AAAAGGCTTA TTCTAAAATG TTCAAGTAGA GGTCCTGAAG
TAATGGTGCA TGCAGCTGAA AAATCAAATG TCTCTGGGGG AATGCCAATT ACAGTGCCAA CAATTTCTGT TTTTTCTTGT
CAGTAGTCTT TGAAAAAAAT CTGATATAGT GTATGTTTTC AAATTTATGC TTTCTAGATT GTGAAGTTGT GACAGAGCTA
TCCATATCTT ACTTTTTGTT CTGTCAAACT CTTTGATCAT CAACCTCTAA CCGGTGATTT TTGTGTAAAA GAGAAAGGCA
GATTGAGACA TCTCATAACA AGACTTCCCA ACAACTCACT TGCCATGTTT TTCTTTGCTT TTATCCTCCA ATGGTAAATG
GTCAACCAGA AGCATTTCTG GCAGCGTGTT AATATCAAGA CAACAAATCA GTAGAATTCC C

>Vigan.01G343800.01
AAGAATACCA GTGTACACTT ATCTGCATTT CTATATTTCT TTACAATTGA ACTAAACCAA ATGCAACAAA TTAGTTTTAA
CAGAACTAAA AGATTACTAA TTAAACTAGT GTATTTGCTG CTTTTCCTTA TTGTTGCGCA GACAAACTGG AGAAGAAAAG
GCGATCAGTG ACACGTGGAA TGGTTAACTG TATAAGTTTT GTCGTTCGCG GCACGAAAAC AAAGGAGTTT GAAATTAAAA
AGCGGGATTA GGGTTTTGTA CTCAACTTCC CTACCTATTT CATCTTCCTC TTTCCATTCT TGCTTTTCTC TCATCTTCAC
CTTCCCAAAA TGGTGAACCC TAAATGCTTC TTGGACATTA GTATCGCTGG CGAGTTAGAG GGTAGAATCG TTATCGAACT
TTTTCAGGAT GTGGTTCCCA AAACCGCGGA GAATTTCAGG GCCCTTTGCA CTGGCGAAAA GGGCATAGGA CCCAACACCA
ATGTCCCCCT TCACTATAAG GGAGTATGTT TTCACCGTGT GATCAAGGGG TTCATGATCC AAGGTGGCGA CATCTCCGCT
GGCGACGGCA CAGGAGGGGA ATCTATATAC GGCCTGAAGT TCGAGGATGA AAACTTGGAG CTGAAGCACG AGAGGAAGGG
GATGCTTTCC ATGGCCAATG CGGGACCCAA CACCAACGGT TCTCAGTTCT TCATCACCAC CACACGCACC CCTCACTTGG
ACGGTAAACA TGTCGTGTTC GGAAGAGTTG TTAAAGGAAT GGGCGTTGTT CGCTCAGCAG AACACATTGT TACTGGCGAA
AACGACCGAC CCACTCAGAC TGTTGTAATC GAGGATTGCG GGGAAATTCC CGAAGGGCAA GATGATGGAG TTGTTAACTT
CTTTAAGGAT GGTGACACTT ATCCGGATTG GCCCGCAGAT CTTGATGTCA AACCTGATGA GCTTTCTTGG TGGATGAGTG
CTGTGGATTC TATCAAGGCT CTGGGGAATG AGCAGTACAA GAAGCAAGAT TATAAGATGG CATTGAGAAA GTATCGCAAA
GCGTTGCGCT ATTTGGATGT GTGTTGGGAG AAGGACGACA TTGACCAAGA GAACAGTGCT TCATTAAGGA AGACAAAATC
TCAAATCTTT ACCAATAGTT CTGCTTGTAA ATTGAAAATA GGTGATCTAC AAGGAGCACT ACTGGATTCA GACTTTGCAA
TGCATGATGG AGATAATGCA AAAGCTCTGT TTCGAAAAGG CCAGGCTTAT ATGTTACTCA ATGACCTGGA TTCTGCTGTT
GAAAGCTTCA AGAAAGCATT AGAGTTGGAG CCTAATGATG GAGGGATTAA AAAGGAGTAT GCCACTGCCA GGAAAAAGGT
TGCTGATAGA CGTGATAGAG AGAAAAAGGC TTATTCTAAA ATGTTCAAGT AGAGGTCCTG AAGTAATGGT GCATGCAGCT
GAAAAATCAA ATGTCTCTGG GGGAATGCCA ATTACAGTGC CAACAATTTC TGTTTTTTCT TGTCAGTAGT CTTTGAAAAA
AATCTGATAT AGTGTATGTT TTCAAATTTA TGCTTTCTAG ATTGTGAAGT TGTGACAGAG CTATCCATAT CTTACTTTTT
GTTCTGTCAA ACTCTTTGAT CATCAACCTC TAACCGGTGA TTTTTGTGTA AAAGAGAAAG GCAGATTGAG ACATCTCATA
ACAAGACTTC CCAACAACTC ACTTGCCATG TTTTTCTTTG CTTTTATCCT CCAATGGTAA ATGGTCAACC AGAAGCATTT
CTGGCAGCGT GTTAATATCA AGACAACAAA TCAGTAGAAT TCCC

>Vigan.01G343800.01
ATGGTGAACC CTAAATGCTT CTTGGACATT AGTATCGCTG GCGAGTTAGA GGGTAGAATC GTTATCGAAC TTTTTCAGGA
TGTGGTTCCC AAAACCGCGG AGAATTTCAG GGCCCTTTGC ACTGGCGAAA AGGGCATAGG ACCCAACACC AATGTCCCCC
TTCACTATAA GGGAGTATGT TTTCACCGTG TGATCAAGGG GTTCATGATC CAAGGTGGCG ACATCTCCGC TGGCGACGGC
ACAGGAGGGG AATCTATATA CGGCCTGAAG TTCGAGGATG AAAACTTGGA GCTGAAGCAC GAGAGGAAGG GGATGCTTTC
CATGGCCAAT GCGGGACCCA ACACCAACGG TTCTCAGTTC TTCATCACCA CCACACGCAC CCCTCACTTG GACGGTAAAC
ATGTCGTGTT CGGAAGAGTT GTTAAAGGAA TGGGCGTTGT TCGCTCAGCA GAACACATTG TTACTGGCGA AAACGACCGA
CCCACTCAGA CTGTTGTAAT CGAGGATTGC GGGGAAATTC CCGAAGGGCA AGATGATGGA GTTGTTAACT TCTTTAAGGA
TGGTGACACT TATCCGGATT GGCCCGCAGA TCTTGATGTC AAACCTGATG AGCTTTCTTG GTGGATGAGT GCTGTGGATT
CTATCAAGGC TCTGGGGAAT GAGCAGTACA AGAAGCAAGA TTATAAGATG GCATTGAGAA AGTATCGCAA AGCGTTGCGC
TATTTGGATG TGTGTTGGGA GAAGGACGAC ATTGACCAAG AGAACAGTGC TTCATTAAGG AAGACAAAAT CTCAAATCTT
TACCAATAGT TCTGCTTGTA AATTGAAAAT AGGTGATCTA CAAGGAGCAC TACTGGATTC AGACTTTGCA ATGCATGATG
GAGATAATGC AAAAGCTCTG TTTCGAAAAG GCCAGGCTTA TATGTTACTC AATGACCTGG ATTCTGCTGT TGAAAGCTTC
AAGAAAGCAT TAGAGTTGGA GCCTAATGAT GGAGGGATTA AAAAGGAGTA TGCCACTGCC AGGAAAAAGG TTGCTGATAG
ACGTGATAGA GAGAAAAAGG CTTATTCTAA AATGTTCAAG TAG

>Vigan.01G343800.01
MVNPKCFLDI SIAGELEGRI VIELFQDVVP KTAENFRALC TGEKGIGPNT NVPLHYKGVC FHRVIKGFMI QGGDISAGDG
TGGESIYGLK FEDENLELKH ERKGMLSMAN AGPNTNGSQF FITTTRTPHL DGKHVVFGRV VKGMGVVRSA EHIVTGENDR
PTQTVVIEDC GEIPEGQDDG VVNFFKDGDT YPDWPADLDV KPDELSWWMS AVDSIKALGN EQYKKQDYKM ALRKYRKALR
YLDVCWEKDD IDQENSASLR KTKSQIFTNS SACKLKIGDL QGALLDSDFA MHDGDNAKAL FRKGQAYMLL NDLDSAVESF
KKALELEPND GGIKKEYATA RKKVADRRDR EKKAYSKMFK *