GBrowse Details

Vigan.01G340800.01

Basic Information:
Name: Vigan.01G340800.01
Multiple alignment
Variant Information
Position: Chr01:47305887..47307728 (+ strand)
Length: 1842
Functional Information:
Description: Similar to Uncharacterized protein. [I1JCV7, Glycine max]
GO: Biological Process: lipid metabolic process (GO:0006629)
Molecular Function: hydrolase activity (GO:0016787)
Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788)
InterPro: Lipase, GDSL (IPR001087)
SGNH hydrolase-type esterase domain (IPR013831)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.09,0.30,1.43,0.17,11.90,2.31,11.47,0.86
Arabidopsis thaliana homolog: AT2G23540.1, AT3G50400.1
Automatic updates:
Name: NM_001253160 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max GDSL esterase/lipase At2g23540-like (LOC100795221), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:47305887..47305889 (+ strand)
Length: 3
Type: five_prime_UTR
Position: Chr01:47305890..47306148 (+ strand)
Length: 259
Type: CDS
Position: Chr01:47306462..47306592 (+ strand)
Length: 131
Type: CDS
Position: Chr01:47306694..47306942 (+ strand)
Length: 249
Type: CDS
Position: Chr01:47307023..47307278 (+ strand)
Length: 256
Type: CDS
Position: Chr01:47307370..47307593 (+ strand)
Length: 224
Type: CDS
Position: Chr01:47307594..47307728 (+ strand)
Length: 135
Type: three_prime_UTR

>Vigan.01G340800.01 class=Sequence position=Chr01:47305887..47307728 (+ strand)
GCCATGGCTT TCCATTGTTA TGACATGTTG GTGCTTGTGT TTTTTCTAGT GAACATTAGC TTTTATGGAA GTGTAGATGG
TCAGAAAAAC GCTTTAGGAG CCTCTTTCAT ATTTGGAGAT TCATTGGTGG ATGCTGGAAA CAATAACTAT TTGTCAACTC
TTTCTAAGGC AAACATCCCT CCCAATGGAA TTGATTTCAA GGCCTCTGGG GGAAACCCCA CTGGCCGCTA CACCAACGGA
AGAACCATTG GTGATATAGT TGGTAACTTT GTCTTCTTTC TCACATACCA AGATCTTTGT GTTTACCTAT TAGATTTTCC
TAGTTAACAA ACAACAACAT TTTCAATTTT TCAATCAACA ACCTTACATG CATAATATAA CTTATATATA TATATATATT
AATCAAGTTA TACTACTAAA AAATATTGAC AATACTTATA TACCGTATTT GTTTTAACAT ATATTAAGGT GTGAGGAATG
ACGTTGAAAA AATGGAAATT AATATTGAAA AACGTGTCTC ATGTCTTTTC TTAACATAAT TAATGTGTTG CTGTTTATAT
TTTAATATTT TTCAGGAGAG GAATTGGGAC AACCAAATTA TGCCATACCA TTTTTAGCAC CAAATGCAAC AGGGAAAACC
ATACTGAGTG GAGTGAACTA TGCTTCGGGA GGGGGAGGAA TAATGAATGC TACTGGAAGG ATATTTGTCA GTATTTTTTT
TTTCTCTGCT GTCTATTCCT TACTTAGTCT TAATCATTCT GTGTAATAAG GAATATAACT GTGTGGAGTC AATAATTTTG
TTTTCAGGTG AATAGAATAG GAATGGATGT TCAAATAGAT TACTTCAGCA TAACAAGAAA ACAAATTGAC AAACTGCTGG
GTGAATCAAA AGCTAAAGAA TACATAACGA AGAAATCCAT TTTCTCTATC ACCGTTGGGG CCAATGATTT TCTCAACAAT
TACCTTCTCC CAGTTCTCTC CATTGGAGCC AGAATTTCTC AAAGTCCAGA TTCTTTCATA GATGACATGA TTACTCATTT
CAGGGCCCAA CTCACGGTAA CAACCTCAAT CTAAATTTAA AGCCAAATTC TATAATCGTT TTAAGAAAAT TAATTGTAAA
TTGAATTGAA TGGCAGAGAC TGTACAAAAT GGATGCCCGA AAGTTCGTGA TAGGAAACGT TGGGCCAATA GGATGCATAC
CTTACCAGAA GACCATAAAT CAGCTGAACG AAGATGAGTG CGTGGATTTG GCCAACAAAC TGGCGCTTCA ATACAATGCT
CGATTGAAAG ATTTGGTTGC CGAGCTAAAC GACAACCTAC CCGGTGCCAC CTTCGTTCTC GCCAATGTCT ACGATTTAGT
CTCAGAACTC ATAAAAAACT ATAAGAAATA CGGTAGATAA TTGCTTTGAT TTTATTTTTA TGTGAAAAAA GTGTTATAAC
TATTTGAGAA ATGAAAAAAT GATATAGAAA GTAAAATTTG CAGGGTTCAG AACAGCAAGT AGAGCTTGCT GTGGAAATGG
GGGCCAATTC GCAGGGATAA TTCCATGTGG GCCTACTTCG AGTATGTGCA GTGATAGGTA CAAGCACGTG TTCTGGGATC
CTTATCATCC AAGCGAAGCT GCAAACCTAA TCCTCGCTAA GCAGCTACTT GACGGAGACA ACAGATACAT ATCTCCTGTC
AATCTTAGGC AGCTCAGGGA TCTTTGATCT TTCATCTTTC ATTTTCTTTT ATTCTTCTCT TCTCTTTCTC TACCACTACT
TTTCTTTTTC CATAACATCT TTTCTCGTGC TTTCATTATT CACTGCAATT CACATAACGT AATTTACGAC CGTAATTTCT
CC

>Vigan.01G340800.01
GCCATGGCTT TCCATTGTTA TGACATGTTG GTGCTTGTGT TTTTTCTAGT GAACATTAGC TTTTATGGAA GTGTAGATGG
TCAGAAAAAC GCTTTAGGAG CCTCTTTCAT ATTTGGAGAT TCATTGGTGG ATGCTGGAAA CAATAACTAT TTGTCAACTC
TTTCTAAGGC AAACATCCCT CCCAATGGAA TTGATTTCAA GGCCTCTGGG GGAAACCCCA CTGGCCGCTA CACCAACGGA
AGAACCATTG GTGATATAGT TGGAGAGGAA TTGGGACAAC CAAATTATGC CATACCATTT TTAGCACCAA ATGCAACAGG
GAAAACCATA CTGAGTGGAG TGAACTATGC TTCGGGAGGG GGAGGAATAA TGAATGCTAC TGGAAGGATA TTTGTGAATA
GAATAGGAAT GGATGTTCAA ATAGATTACT TCAGCATAAC AAGAAAACAA ATTGACAAAC TGCTGGGTGA ATCAAAAGCT
AAAGAATACA TAACGAAGAA ATCCATTTTC TCTATCACCG TTGGGGCCAA TGATTTTCTC AACAATTACC TTCTCCCAGT
TCTCTCCATT GGAGCCAGAA TTTCTCAAAG TCCAGATTCT TTCATAGATG ACATGATTAC TCATTTCAGG GCCCAACTCA
CGAGACTGTA CAAAATGGAT GCCCGAAAGT TCGTGATAGG AAACGTTGGG CCAATAGGAT GCATACCTTA CCAGAAGACC
ATAAATCAGC TGAACGAAGA TGAGTGCGTG GATTTGGCCA ACAAACTGGC GCTTCAATAC AATGCTCGAT TGAAAGATTT
GGTTGCCGAG CTAAACGACA ACCTACCCGG TGCCACCTTC GTTCTCGCCA ATGTCTACGA TTTAGTCTCA GAACTCATAA
AAAACTATAA GAAATACGGG TTCAGAACAG CAAGTAGAGC TTGCTGTGGA AATGGGGGCC AATTCGCAGG GATAATTCCA
TGTGGGCCTA CTTCGAGTAT GTGCAGTGAT AGGTACAAGC ACGTGTTCTG GGATCCTTAT CATCCAAGCG AAGCTGCAAA
CCTAATCCTC GCTAAGCAGC TACTTGACGG AGACAACAGA TACATATCTC CTGTCAATCT TAGGCAGCTC AGGGATCTTT
GATCTTTCAT CTTTCATTTT CTTTTATTCT TCTCTTCTCT TTCTCTACCA CTACTTTTCT TTTTCCATAA CATCTTTTCT
CGTGCTTTCA TTATTCACTG CAATTCACAT AACGTAATTT ACGACCGTAA TTTCTCC

>Vigan.01G340800.01
ATGGCTTTCC ATTGTTATGA CATGTTGGTG CTTGTGTTTT TTCTAGTGAA CATTAGCTTT TATGGAAGTG TAGATGGTCA
GAAAAACGCT TTAGGAGCCT CTTTCATATT TGGAGATTCA TTGGTGGATG CTGGAAACAA TAACTATTTG TCAACTCTTT
CTAAGGCAAA CATCCCTCCC AATGGAATTG ATTTCAAGGC CTCTGGGGGA AACCCCACTG GCCGCTACAC CAACGGAAGA
ACCATTGGTG ATATAGTTGG AGAGGAATTG GGACAACCAA ATTATGCCAT ACCATTTTTA GCACCAAATG CAACAGGGAA
AACCATACTG AGTGGAGTGA ACTATGCTTC GGGAGGGGGA GGAATAATGA ATGCTACTGG AAGGATATTT GTGAATAGAA
TAGGAATGGA TGTTCAAATA GATTACTTCA GCATAACAAG AAAACAAATT GACAAACTGC TGGGTGAATC AAAAGCTAAA
GAATACATAA CGAAGAAATC CATTTTCTCT ATCACCGTTG GGGCCAATGA TTTTCTCAAC AATTACCTTC TCCCAGTTCT
CTCCATTGGA GCCAGAATTT CTCAAAGTCC AGATTCTTTC ATAGATGACA TGATTACTCA TTTCAGGGCC CAACTCACGA
GACTGTACAA AATGGATGCC CGAAAGTTCG TGATAGGAAA CGTTGGGCCA ATAGGATGCA TACCTTACCA GAAGACCATA
AATCAGCTGA ACGAAGATGA GTGCGTGGAT TTGGCCAACA AACTGGCGCT TCAATACAAT GCTCGATTGA AAGATTTGGT
TGCCGAGCTA AACGACAACC TACCCGGTGC CACCTTCGTT CTCGCCAATG TCTACGATTT AGTCTCAGAA CTCATAAAAA
ACTATAAGAA ATACGGGTTC AGAACAGCAA GTAGAGCTTG CTGTGGAAAT GGGGGCCAAT TCGCAGGGAT AATTCCATGT
GGGCCTACTT CGAGTATGTG CAGTGATAGG TACAAGCACG TGTTCTGGGA TCCTTATCAT CCAAGCGAAG CTGCAAACCT
AATCCTCGCT AAGCAGCTAC TTGACGGAGA CAACAGATAC ATATCTCCTG TCAATCTTAG GCAGCTCAGG GATCTTTGA

>Vigan.01G340800.01
MAFHCYDMLV LVFFLVNISF YGSVDGQKNA LGASFIFGDS LVDAGNNNYL STLSKANIPP NGIDFKASGG NPTGRYTNGR
TIGDIVGEEL GQPNYAIPFL APNATGKTIL SGVNYASGGG GIMNATGRIF VNRIGMDVQI DYFSITRKQI DKLLGESKAK
EYITKKSIFS ITVGANDFLN NYLLPVLSIG ARISQSPDSF IDDMITHFRA QLTRLYKMDA RKFVIGNVGP IGCIPYQKTI
NQLNEDECVD LANKLALQYN ARLKDLVAEL NDNLPGATFV LANVYDLVSE LIKNYKKYGF RTASRACCGN GGQFAGIIPC
GPTSSMCSDR YKHVFWDPYH PSEAANLILA KQLLDGDNRY ISPVNLRQLR DL*