GBrowse Details

Vigan.01G334600.01

Basic Information:
Name: Vigan.01G334600.01
Multiple alignment
Variant Information
Position: Chr01:46378053..46382357 (- strand)
Length: 4305
Functional Information:
Description: Similar to random slug protein 5-like isoform X3. [XP_004509256.1, Cicer arietinum]
GO: Biological Process: transport (GO:0006810)
Cellular Component: intracellular (GO:0005622)
Molecular Function: transporter activity (GO:0005215)
InterPro: Cellular retinaldehyde binding/alpha-tocopherol transport (IPR001071)
CRAL-TRIO domain (IPR001251)
CRAL/TRIO, N-terminal domain (IPR011074)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:30.29,2.37,15.16,13.48,14.33,13.46,16.52,16.16
Arabidopsis thaliana homolog: AT4G36640.1
Automatic updates:
Name: NM_001252826 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max CRAL-TRIO domain-containing protein C23B6.04c-like (LOC100800024), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254706 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max sec14p-like lipid-binding domain-containing protein (LOC100782334), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:46378053..46378364 (- strand)
Length: 312
Type: three_prime_UTR
Position: Chr01:46378365..46378667 (- strand)
Length: 303
Type: CDS
Position: Chr01:46379238..46379483 (- strand)
Length: 246
Type: CDS
Position: Chr01:46379568..46379666 (- strand)
Length: 99
Type: CDS
Position: Chr01:46380694..46380870 (- strand)
Length: 177
Type: CDS
Position: Chr01:46381282..46381347 (- strand)
Length: 66
Type: CDS
Position: Chr01:46381348..46382357 (- strand)
Length: 1010
Type: five_prime_UTR

>Vigan.01G334600.01 class=Sequence position=Chr01:46378053..46382357 (- strand)
TGGTGAAGTT AAGAAGAAGA CGTTAAAGAA GGGAAAGAGA AAGCGTAAGT AAGTGACACT CGTGTGAGCC AAATCACAAG
AGACATGCGC CAGAGTGTGC GAATCCACCC ATCCATCTCA CTCATTCCCC ACTCACTCAA ACGCACACAC AATAACAAAC
ACAATGCACG CCCATGCCCA CTTCCTAATT CTCTTCTCAA AAACTTCTTC AATCATATAG CATTACCCTT TCAGCTCCTT
CCATACCTTC ATTCTCACAA GGTTTTCCTT CCATTTTCAT TCTTCACTCT CTGGATCCGA TTCTCGAATA TTGCTTTATA
TTCTTTTACT GAGAATCCTT TCTCTTCTCT TTTTTTTTTT TTTTTTTTTC TGTTTTACTC TTTTCACCTC TCTCCTGTCA
CTGCTTCATC AGATTCGAGG CCTTTATATG TGTGCTTCGG TCTTCGCCTT ACTCTTATTC TGATTCGTTT TACATTTTAT
TCCTTCTCGT TTTTGTCAGT CAACGCTGCC GTTTTACGCT AGTGTGTAAA ACGGATCGGT TTGAGAAGAG AGAAAAATCA
AATTGAGGTT GAAAAGGTTG ACCTTCTTCG TGTTGGACTA GGTGAACGGA ACAGAATTGG TGTCTTTTTT CGGTTTTGTC
TTTTGTACGA ATAGATCGGT CGATTGCTTA TATTTTATGT TGTTAATTAG TTTTTTATTC GGTGAACGAA GGGGCTCCGG
CAATGTTTAT AAAGAATTGT TAGCTGTTTG GGTATGTAAC TGTGCCGTGT TTTGGTTTGG TTGTGATTAA GGTGATGTAG
GTACTTGGGA TTGAATACAG TGGTTTTTGA TTTGATTGTT ATTGAGGGGA GTTCTTCTTT ACGAGGGTTT GATTGTTGCT
GACTTCCGGT TATTGTATTC TATGTTTCAA CTTTCATGAT TTTGTGGGGT TGTTGATTTT AGGCTTGAAG AGGAAGTGTA
ATCCTGAAGT TTTCTGCTGC AGGTGGAAGC TAGTACATTT GGTGGACAAC ATGTTCCTTC TTAGAAGGCA AGGCCAAAAT
CAGCTGGAGA ATGATTCCTC AAAACAAGAT ACAAAGGTAT ATCTATTTGT TAATTCAGAA GCTCCATATC AGATCTGGAA
AAATCCCAAA GAAGAGTTCT AACAGTACAC TCTCTGCAAT ACACACACTC TCTTGTTGAT TAAATTTTTT TGAAAACAAC
AAAATAATAT GTGGGGTTCC ATGAGTATGA AGTGGATCCC TCACGATTCT GTGGTTTTCA ACAACTTTTA GCCAATAATA
GAGAATACAT CAGAGAACGT GTGTTAGAGA AAGCGTTTCT AACCTTTATG AAATTCCAAA TACAAAGTTA TTTGAGTCTG
TATTATTTAT CTTCATCGCA ATTGGCATCC ATTAAGGATG ATGGGAAATT ATTAATACTT GTCCATAAAA AAGACATTCA
TGAATGCTAG CTTTTACGAG GACCAACTGT AACACATCTG TAAACAGGTG AATGAACTCA GGGCTGCTGT TGGGCCCCTC
TCTGGTCGTC GACTACTGTA TTGCACAGAT GCATGTCTAA GGAGATATTT AGAAGCAAGG AATTGGAATG TTGATAAAGC
AAAGAAAATG CTGGAGGAAA CACTCAAGTG GAGGGCAACT TATAAGCCAG AAGAAATTCG TTGGGTTAGT TTGATTTAAC
TGACTTTGTT GCCCACATGC TTGATTTGGT GATGCCAAAA TTGAAATTGC CTATGATCAT TTCATACTTA TAGCACTGAT
CCATGTTGTA AACAATTTCA CAAATAAATG ATGATCGATC AACATATCAG CATACGGTCT TGATGTTTAT CATCTTGTTC
TTACCTGTCT TGAGCTGACA TAAGGTCCGT GTGTTGTTTT TGTTTTTACT TGTGGCAGAA GCAATTCGTT TATATTGTCC
TTTTACTGTA TGATCTTCTG CAAGATACTT CTCTACAGTC TTTACTGCAA ACATCTCCTG TACTTTTTTT TCTTGGAGCA
GCATAATTCT TAGTTTATAA ATCAATACTT CAGTACTAGA TTATTCAATA TAAGGGCAAG AACATATACA TCTAAAATTT
AGAGTGTTGA GATTGAGTTG TTTCTTGTGA AATCAATTAA GACCATACAT TAGCATAGTA ATATATTTAG TTCCAAAATT
ATGATACGAT GACCTCTACA TGTGTTTAGT ATCTGCTTAT TCTGCAAGGA CAAAGCCTCT CTTTGTTTCC ACTGAAAATA
TGAAAGAAGG AAATTGAAGC AGCTGAAATG TGAATGATAA ATAGAACTTC ATCCGTTTGT TTGCATTTTA AAAAGAGTGG
GAAATAATAA AATTTCATGG ACTCCACATG CAAGGCGTGA AACCGAGTGG ATATTACAGC ATACACGTAC AGTGCAAACA
CTCCTAATTT TGCCCCTACA TTTCAGATTA CGTCCGTTAC TACTATATGT TTTAAGAATA AATTATACTA TCATATTTCA
TTCCTTCTTT AATTCTATTC CGCCAAACAA TACATTTTCT CTTTGTATTA ATTTTATTTC CTATTCTCTT ATTTATTTAG
TTTCTATTTC ATACTCCATT CAAATATAGC ATCATTGAAA CCATCATCAA GTGACAGCCT GTTTATGAAT GTTGCCCTTT
CATGTACTAT ATATGCCTTG TATTAACAAT TGAATAACCT CCTACATCCA GGCTGAAGTA GCACATGAGG GTGAGACAGG
TAAAGTATCC AGAGCTAACT TTCGTGATCG ACTTGGGAGG ACTGTGCTTA TTATGAGGCC AGGAATGCAG GTTTGTACAA
TCATGTATTT TTAATAGGGC TTCTCTGTAC ACGACTGGTT AACTTAATCT GTCTAATCTG TTTTCTTTTG TTAGAACACA
ACATCAGCTG AAGATAATAT CAGGCATTTA GTCTATCTAT TGGAAAATGC TATCCTAAAT CTTCAAGAAG GTCAAGAACA
AATGTCGTGG TTGATAGACT TCACAGGATT ATCATTGAAT ACAAATATTT CTGTTAAAAC AGCTCGTGAT ATTATTCACA
TTTTACAAAA TCACTATCCA GAAAGGCTTG CTATTGCTTT CCTGTACAAT CCACCAAGAA TATTTCAGGC TTTCTGGAAG
GTTTGTTCTG CTGCCCTGCA AGTTATATTC CGCCTGCTTT TTCATGGCTA TTTAGGAAGT TTGCATTGCA TAGCAGTTGT
TTCTATAATT TATATTTTAC TTTTAAAGAT CAGGCAATAC TTGGCTTAAC CATTTTTTCT TATGTTAATG CTAATGTGTT
CTGTCACTTT TATCTTCAGA ACATCTGATG ATCTTTATGT AATTGAATGT TCAAATCACA TAATGTGTGT CAGTAGGGAA
ATTTTTGTTG GTTTTCAGCA AAATAAACTA TACACTGTAG TTATTCTTGA AAATCAGCCG TGTAGGTAGT GTTGGTCTTT
AATATGTTTT TCTTCTTAAG TTCTTTTGTG GATGGGGTCT GGGATCATGT AGAAGGATAT ATGAAATATA CTTAGTTTCT
TATCCCCCCA TCCTTCTCTT CTGTACTATT TTTCTTCTTC ACCACCTTGT CGTATTTAAA ATTTTTCATG TTGGTTGACT
TCTATGATTG TGCTCTATTT AAGGTTGAAT TTGAGCTTTT AACAGTTACC TTTTCCATTT AACAATGTGA AGTTGATCTT
ATTTTGATAG GCCGTGAGGT TTTTCCTGGA TCCGAAGACA GTCCAGAAGG TGAAGTTTGT TTATCCTAAT AATAAGGACA
GTGTGGAACT AATGCAATCA CTCTTCGACC TAGATAACCT TCCAAGTGAA TTTGGAGGGA AAACAAGTTT AATGTATGAC
CATGAAGAGT TCTCACGGTT GATGACTGAG GATGATGTGA AAACTGCTAA GTTCTGGGGA ATTGACCAGA AGCCTTTCAA
CCCTCCTAAG AAAGGGCATG CTGGAGCAGA GGTGGCACCA GAACCCGTGT CTGTTCAGAC AGTAGGTAGT TAGTTAGTTG
AGCTACTTTT AAAACTGTAG TCATTTATAA ACTGAAGTGA CTACATATCT GAATCATTAA TTCAGTGGCT AATTTAAGGA
GCCGAATAAG CGGTATTTTG TATCTTTCAA CTTTTTAACC ATTTATGGCG ATAGCTGCTA TAGTCCTCGA CTTTTAGGTA
ACCGAACTAA AATTCAGACT ATATATGTCA ATTCTCCAAT CCTGTGCAAA GTTAATTTCT TGTTGCTAGC TTGTCCTTGT
GCCTATTCAA GCTAATACAA AGTATAAAAA AATCATTGAT CCTAAGCAGA GACATGGATG GCAAA

>Vigan.01G334600.01
TGGTGAAGTT AAGAAGAAGA CGTTAAAGAA GGGAAAGAGA AAGCGTAAGT AAGTGACACT CGTGTGAGCC AAATCACAAG
AGACATGCGC CAGAGTGTGC GAATCCACCC ATCCATCTCA CTCATTCCCC ACTCACTCAA ACGCACACAC AATAACAAAC
ACAATGCACG CCCATGCCCA CTTCCTAATT CTCTTCTCAA AAACTTCTTC AATCATATAG CATTACCCTT TCAGCTCCTT
CCATACCTTC ATTCTCACAA GGTTTTCCTT CCATTTTCAT TCTTCACTCT CTGGATCCGA TTCTCGAATA TTGCTTTATA
TTCTTTTACT GAGAATCCTT TCTCTTCTCT TTTTTTTTTT TTTTTTTTTC TGTTTTACTC TTTTCACCTC TCTCCTGTCA
CTGCTTCATC AGATTCGAGG CCTTTATATG TGTGCTTCGG TCTTCGCCTT ACTCTTATTC TGATTCGTTT TACATTTTAT
TCCTTCTCGT TTTTGTCAGT CAACGCTGCC GTTTTACGCT AGTGTGTAAA ACGGATCGGT TTGAGAAGAG AGAAAAATCA
AATTGAGGTT GAAAAGGTTG ACCTTCTTCG TGTTGGACTA GGTGAACGGA ACAGAATTGG TGTCTTTTTT CGGTTTTGTC
TTTTGTACGA ATAGATCGGT CGATTGCTTA TATTTTATGT TGTTAATTAG TTTTTTATTC GGTGAACGAA GGGGCTCCGG
CAATGTTTAT AAAGAATTGT TAGCTGTTTG GGTATGTAAC TGTGCCGTGT TTTGGTTTGG TTGTGATTAA GGTGATGTAG
GTACTTGGGA TTGAATACAG TGGTTTTTGA TTTGATTGTT ATTGAGGGGA GTTCTTCTTT ACGAGGGTTT GATTGTTGCT
GACTTCCGGT TATTGTATTC TATGTTTCAA CTTTCATGAT TTTGTGGGGT TGTTGATTTT AGGCTTGAAG AGGAAGTGTA
ATCCTGAAGT TTTCTGCTGC AGGTGGAAGC TAGTACATTT GGTGGACAAC ATGTTCCTTC TTAGAAGGCA AGGCCAAAAT
CAGCTGGAGA ATGATTCCTC AAAACAAGAT ACAAAGGTGA ATGAACTCAG GGCTGCTGTT GGGCCCCTCT CTGGTCGTCG
ACTACTGTAT TGCACAGATG CATGTCTAAG GAGATATTTA GAAGCAAGGA ATTGGAATGT TGATAAAGCA AAGAAAATGC
TGGAGGAAAC ACTCAAGTGG AGGGCAACTT ATAAGCCAGA AGAAATTCGT TGGGCTGAAG TAGCACATGA GGGTGAGACA
GGTAAAGTAT CCAGAGCTAA CTTTCGTGAT CGACTTGGGA GGACTGTGCT TATTATGAGG CCAGGAATGC AGAACACAAC
ATCAGCTGAA GATAATATCA GGCATTTAGT CTATCTATTG GAAAATGCTA TCCTAAATCT TCAAGAAGGT CAAGAACAAA
TGTCGTGGTT GATAGACTTC ACAGGATTAT CATTGAATAC AAATATTTCT GTTAAAACAG CTCGTGATAT TATTCACATT
TTACAAAATC ACTATCCAGA AAGGCTTGCT ATTGCTTTCC TGTACAATCC ACCAAGAATA TTTCAGGCTT TCTGGAAGGC
CGTGAGGTTT TTCCTGGATC CGAAGACAGT CCAGAAGGTG AAGTTTGTTT ATCCTAATAA TAAGGACAGT GTGGAACTAA
TGCAATCACT CTTCGACCTA GATAACCTTC CAAGTGAATT TGGAGGGAAA ACAAGTTTAA TGTATGACCA TGAAGAGTTC
TCACGGTTGA TGACTGAGGA TGATGTGAAA ACTGCTAAGT TCTGGGGAAT TGACCAGAAG CCTTTCAACC CTCCTAAGAA
AGGGCATGCT GGAGCAGAGG TGGCACCAGA ACCCGTGTCT GTTCAGACAG TAGGTAGTTA GTTAGTTGAG CTACTTTTAA
AACTGTAGTC ATTTATAAAC TGAAGTGACT ACATATCTGA ATCATTAATT CAGTGGCTAA TTTAAGGAGC CGAATAAGCG
GTATTTTGTA TCTTTCAACT TTTTAACCAT TTATGGCGAT AGCTGCTATA GTCCTCGACT TTTAGGTAAC CGAACTAAAA
TTCAGACTAT ATATGTCAAT TCTCCAATCC TGTGCAAAGT TAATTTCTTG TTGCTAGCTT GTCCTTGTGC CTATTCAAGC
TAATACAAAG TATAAAAAAA TCATTGATCC TAAGCAGAGA CATGGATGGC AAA

>Vigan.01G334600.01
ATGTTCCTTC TTAGAAGGCA AGGCCAAAAT CAGCTGGAGA ATGATTCCTC AAAACAAGAT ACAAAGGTGA ATGAACTCAG
GGCTGCTGTT GGGCCCCTCT CTGGTCGTCG ACTACTGTAT TGCACAGATG CATGTCTAAG GAGATATTTA GAAGCAAGGA
ATTGGAATGT TGATAAAGCA AAGAAAATGC TGGAGGAAAC ACTCAAGTGG AGGGCAACTT ATAAGCCAGA AGAAATTCGT
TGGGCTGAAG TAGCACATGA GGGTGAGACA GGTAAAGTAT CCAGAGCTAA CTTTCGTGAT CGACTTGGGA GGACTGTGCT
TATTATGAGG CCAGGAATGC AGAACACAAC ATCAGCTGAA GATAATATCA GGCATTTAGT CTATCTATTG GAAAATGCTA
TCCTAAATCT TCAAGAAGGT CAAGAACAAA TGTCGTGGTT GATAGACTTC ACAGGATTAT CATTGAATAC AAATATTTCT
GTTAAAACAG CTCGTGATAT TATTCACATT TTACAAAATC ACTATCCAGA AAGGCTTGCT ATTGCTTTCC TGTACAATCC
ACCAAGAATA TTTCAGGCTT TCTGGAAGGC CGTGAGGTTT TTCCTGGATC CGAAGACAGT CCAGAAGGTG AAGTTTGTTT
ATCCTAATAA TAAGGACAGT GTGGAACTAA TGCAATCACT CTTCGACCTA GATAACCTTC CAAGTGAATT TGGAGGGAAA
ACAAGTTTAA TGTATGACCA TGAAGAGTTC TCACGGTTGA TGACTGAGGA TGATGTGAAA ACTGCTAAGT TCTGGGGAAT
TGACCAGAAG CCTTTCAACC CTCCTAAGAA AGGGCATGCT GGAGCAGAGG TGGCACCAGA ACCCGTGTCT GTTCAGACAG
TAGGTAGTTA G

>Vigan.01G334600.01
MFLLRRQGQN QLENDSSKQD TKVNELRAAV GPLSGRRLLY CTDACLRRYL EARNWNVDKA KKMLEETLKW RATYKPEEIR
WAEVAHEGET GKVSRANFRD RLGRTVLIMR PGMQNTTSAE DNIRHLVYLL ENAILNLQEG QEQMSWLIDF TGLSLNTNIS
VKTARDIIHI LQNHYPERLA IAFLYNPPRI FQAFWKAVRF FLDPKTVQKV KFVYPNNKDS VELMQSLFDL DNLPSEFGGK
TSLMYDHEEF SRLMTEDDVK TAKFWGIDQK PFNPPKKGHA GAEVAPEPVS VQTVGS*