GBrowse Details

Vigan.01G326000.01

Basic Information:
Name: Vigan.01G326000.01
Multiple alignment
Variant Information
Position: Chr01:45421165..45425695 (+ strand)
Length: 4531
Functional Information:
Description: Similar to Peptidylprolyl cis/trans isomerase. [XP_007046727.1, Theobroma cacao]
GO: Molecular Function: isomerase activity (GO:0016853)
InterPro: Peptidyl-prolyl cis-trans isomerase, PpiC-type (IPR000297)
Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site (IPR023058)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:60.30,92.43,77.75,72.74,97.67,137.89,96.59,72.16
Arabidopsis thaliana homolog: AT2G18040.1
Automatic updates:
Name: NM_001250015 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499854 (LOC100499854), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001349812 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative peptidyl-prolyl cis-trans isomerase (LOC100500451), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:45421165..45421593 (+ strand)
Length: 429
Type: five_prime_UTR
Position: Chr01:45421594..45421837 (+ strand)
Length: 244
Type: CDS
Position: Chr01:45425151..45425275 (+ strand)
Length: 125
Type: CDS
Position: Chr01:45425276..45425695 (+ strand)
Length: 420
Type: three_prime_UTR

>Vigan.01G326000.01 class=Sequence position=Chr01:45421165..45425695 (+ strand)
ATCTTTGTCA GTGCAATACG TGGAATAGTT CTAAATGACG TTGGAATTCC GTTGTGCATT TATATGTATT TATGAGAAAA
ACAGCATAAT CATCATTAAG CAGTAGAAAA GGCCACTTAG ATGGAGACAC GCGGCACAAA CAGTGTTAGG GCATTCAGTT
ATTCGAACAA CAAAATAGCG ACAATGAATC TGACCCGTAC GATGAATCTC AAACGGACGA CTAAGATGTC CACAACAACT
GAGTGACCCT TGTTTTAGGA CCACTCTATA AATACCGGAG CCCGAGGCTT TCACCGCGCA TAGTTGCGTT CTCTCTCTGG
AGCTAGGGTG ACCGGAGCGG CGAAGATTGA GTCGGATCGG AAGAGAAAGA AGGCGTCCAC CGCAGCGGCG GATCGGTCGG
AGAAGGAAAA CAGGAAGAAG AAGGTGAAGA TGTCGTCGTC AAAAGTTGGC GGTGAGATTA GGGCTTCGCA CATACTAATA
AAGCACGAAG GTTCTAGAAG GAAGGCGTCG TGGAAGGATC CAGAAGGACG CATAATCAAG AACACCACAA GAGAAGCTGC
GGTTTCTCAG CTCAAGGCCC TTCGCGATGA CATCGTCTCG GGCAAGGCAA CCTTCGAGGA CGTCGCGTCT CGATTCTCCG
ATTGCGGCTC CGCCAAGCGC GGCGGCGATC TTGGTCAGTT CTGAACAAAC TATCTCCATA TTAATGATAA TATTTTTTAC
ATAAAAGTAA AAATATTAAA GTGCATTTGG ATTTATTGTG TACGGATTTG AGCGTTCGGT ATTCTGAGGA CAAATTTTGG
TAATTCAAAA TTGTGTCAGT CTATAAATTG TATGTATCTG AGGTGTCGGT GGTGGTGATC CAAATTTTGG GTCAATTGTG
CATTGAGTTA AATATTTTTC GTTATCAGAA AGTTTTGGTC AAGTGAGATC GGTTACTATT AAATCTCAGT GCAGGATCGA
AGTCAACTTG TCTTTAAGTG ACTTCTTGAT TTCTTTTCTT AGTCCTGTTG TTTATTCCCA AACTGTGAGG CCCAGTTAAA
AAATGGGGAA GTATGTCTCT CCAGTACTCA ATCATATGTA TCGGAAAAAG TATAATATCC TCTTTGATCT TTTTTTTCCT
TGGTTTTGGC TTTAATTCGT CGGAATATTA TCGGAAATAC TAGCTTTAAA GCATCTTGAG CATTTATATT CTCTTCCATT
ATTTTGAAGA GGTTCAAAAT TGATTTGAAA AAGGTTGGAT ATTTAGTTTA TGTGCGGTGC CTTTGACTTT AGTCTTGAAA
AAGTGAAAGA TATATATTGA GGCAAGGTTT GTGGGACAAT AGTGGAGATA TGTTCATGTG ATAATGGTGC TGAGCAAAAA
GAATTGGCAG AATTTTTTCT TGATTGATTC CTCATTTTTT AACTGGGCCT CACAGTTTGG GAATAAACAA CAGGACTAAG
AAAAGAAATC AAGTTTGATT AATCATATGT ATCGGAAAAA CTATAATATC CTCTTTGATC TTTCTTTTCC TTGGTTTTGG
CTTTAATTCG TCGGAATATT ATCGGAAATA CTAGCCTTAA AGCATCTTGA GCATTTATAT TCTCTTCCAT TGTTTTGAAG
AGGTTCAAAA TTGATTTGAA AAAGGTTGGA TATTTAGTTT ATGTGCGGTG CCTTTGACTT TAGTCTTGAA AAAGTGAAAG
ATATATATTG AGGCAAGGTT TGTGGGACAA TAGTGGAGAT AAGTTCATGT GATAATGGTG CTGAGCGAAA TGAATTGGCA
GAATTATTTC TTGATTAATC AAACTTAGAA GCTGTCCGTT TCCGGGGTGA TGGTAATGGA GGCTAGGATA ATGATATTAT
TAGCATTAAA TAGTAATTTA GCAACAATAC TTGTACATTG TAGGCTATTT TGAGGTCTAC AAATAATGTT TTTATTACCC
ATGACTTATC ATGTTTTTTG TTTTGATCAC AAATATCCTT TTTGTAAACT GTGATCATTA TAGTTATTAA TTAATGAGAG
AATAATTGTC AATTTCTTTG CCGATATTCA GAATCTATAT AAAATATTTT GTACATTTTT ATTAACGTAT CCATAACGTT
TCATATCTTA AATTTCAAAA TTTTGTCTTG TTCTCATATT CTTGTCGTGT TGTATTGTAT CCCATGCCAT AGGCATTATC
CAGGCTTCAT AGTTCCCAAG TATTGCGCAG GTAGCCTGAC TTGTGGAGCT GCATTTAGTT ATCTGAGGAG TTCTTGTTAG
TGTACTGTGA TGTAACGCAA CAGAACAAGA TTTACGGGCT TAATTGGATG AACAAAACTT AGATGTAGTT CTGTAGGTGC
TTTTGGTCAT GTTTCTGAAT CAGAATTTGA GTTTTAGTCT CTGATAATCC GTACGATAAA AGTTTTCATT AAGTGCCATT
GTGGATTAAT GTAATGATAC TCTGTTTCTG ATTAGAGAAT TGCACCAGAA GAACTTATGG AGTTGCATCT AACTTTTGTC
CTTTGATGGA TTGAGTTGCC AGTTCGTCTT CTAATTATAT TATTTATTAA ATCAGCAGTT AGTTTGAATA AGTGCCACTA
AATGACCCGG GCATGTAAAG TGAGATAGTA AAAGAGCATA CACAGTTAGT TTGAATAATA CGTAATACAT GTAAACCTAC
CCAACTTCAA CCTAGCAACA AGTACATCCT TGTACTCTTT CACTTTAAGC ACATTTGGGG CGGTTGATGC TGGATCTAAT
ATCTCTAAGG TGAAATAGTG CTCAAAGTGA AAAAGTTCAA GGATGTAATA GTTGCTAAGT TGAATTTGGG TAGGTTTACA
TGCATTATGT ATTTTATTCA AATTGTCTCA CTTTACATGC CTGCCTCATT TAGTGGCACC GAAACTGCCG ATGACACTTG
TTTCTTTGTG TTTCGAATTA ACAGAACATA AATCCGAACT TTCAATGACA TTTCTTGTTG TGTTTCATAA GAATTCACAT
ATCTCACCAA TGCTCACCTG TTGTGTCATC TTACACCCTT TCGTGAGCTT TAACATAAAC ATCACGTTTG TGTTTTCTTT
CATCTTTTAT ATGGAATTTT CTCCATATCA CTTTAATGTA CCAGATTCTT ATCACCTGTA TTAGATTATA TGTGTTGCCG
TGAAGGGTTG GGTATAGTGA AGGGAGTTAG TTTCCTACAA TGTAGCAAAC CAAGTTTTGA TATCCATTTT TAGTGTTCGA
TTGTATCTTG AACAAGATTG TAGCCAAGGA AGCATACGAG AAACTGAAAA GAAAGAAATA CCTGGACTTG AATCAAGTAT
GAAGTTGATG TGACTTCTTC CACGTAATTT GGTTTCATCT TCTGGTGTGA ATTAATCCCA GATGTTTCCA AAGTATCCCT
TGAGTATTTG TTACCATTTT ACCAAAAAGA AAATGTAAGA AGTCAATTGT TTTATATAAA AAATCATATA TATTAGTTCT
TCACTACCAC AAACAGTATA TGAAATAGTT CTCAGTTCAT GTCGTTGTGC TTGATATAAA TTGGAATACC AGAAAAAGGC
TGTTGTTCGA GAATTAAGAA GCATTTTATA AGTTCCAAGA TGTTATCGTG AAAAATTACT TTTGATTTGA TGTTGTGATG
GTATATATTT GTTGGCCCTC TTGATGTTTC TACGGCAATC GACATCTGCC AGCGTAGCTG TAAGCGGATC AAATATTTGC
TTAAATGTGA TTTATAGGTC TACTGTACTC AATCTCTTAA AACAACGAAT CTCTCAATCT TTGTAACTGT CAAGTTATTG
TCTGGCTGTG AAGTTAAACC GTGTCTCCAT GAATGCAGTT CCTTGAAACA ACAATCTTGT AAGTTACTTG TTGGGTGTTT
GGGCAGTGAA TTTTGTTGTT AATCTTTCAA AAACGTAACG TAGACCTTTA GATGCACGAC CAAACTCACC CTCGTCATAA
TGTATTGGGG ATCTACATTC AGTCATGATA TTCATATCTG AAGTGAAATA ACTTTCGTGG GTGCAGGTCC TTTCGGTCGT
GGTCAGATGC AGAAGCCTTT TGAAGAGGCA ACCCTTGCTC TTAAAGTTGG TGAACTTAGT GACATTGTGG ATACCGACAG
TGGAGTCCAC ATTATTAAGA GGACGAAATG ATTACACGGA GTTATCTCCT ATTAACATCT GTAGAAGATA TCCAGGATTC
TTGTTGAGGT CAAGATCTGC TGATATAAGT ATATCAGGTT TCAGACATGG TCGCCCCATG TATTTGGACG ATATATTGCT
TTCATGACAA TTAAAATCGT GTGGTATGCT TGTAATTTTG AATAACATTT ATACGTTTTG GATTCTGTTG CCATCCGAAT
GTCCTTATAT TAAAGGAGAA ACATGTGATC CTTCACTAAA GCATCCCATT TAACTCCATA AGTCATCCAA TACCTTCCCC
ACCTTTGGGC AAAATTCTTA TATCTCACAA CTCTACGTTA TTATGAAATA ATGTGTCGGG CACCCAATTA GCAATGTGCT
TATTACTGGA AAATACTTTT ACTTGAAAAG AAGTAAATGT TTAAACTATC A

>Vigan.01G326000.01
ATCTTTGTCA GTGCAATACG TGGAATAGTT CTAAATGACG TTGGAATTCC GTTGTGCATT TATATGTATT TATGAGAAAA
ACAGCATAAT CATCATTAAG CAGTAGAAAA GGCCACTTAG ATGGAGACAC GCGGCACAAA CAGTGTTAGG GCATTCAGTT
ATTCGAACAA CAAAATAGCG ACAATGAATC TGACCCGTAC GATGAATCTC AAACGGACGA CTAAGATGTC CACAACAACT
GAGTGACCCT TGTTTTAGGA CCACTCTATA AATACCGGAG CCCGAGGCTT TCACCGCGCA TAGTTGCGTT CTCTCTCTGG
AGCTAGGGTG ACCGGAGCGG CGAAGATTGA GTCGGATCGG AAGAGAAAGA AGGCGTCCAC CGCAGCGGCG GATCGGTCGG
AGAAGGAAAA CAGGAAGAAG AAGGTGAAGA TGTCGTCGTC AAAAGTTGGC GGTGAGATTA GGGCTTCGCA CATACTAATA
AAGCACGAAG GTTCTAGAAG GAAGGCGTCG TGGAAGGATC CAGAAGGACG CATAATCAAG AACACCACAA GAGAAGCTGC
GGTTTCTCAG CTCAAGGCCC TTCGCGATGA CATCGTCTCG GGCAAGGCAA CCTTCGAGGA CGTCGCGTCT CGATTCTCCG
ATTGCGGCTC CGCCAAGCGC GGCGGCGATC TTGGTCCTTT CGGTCGTGGT CAGATGCAGA AGCCTTTTGA AGAGGCAACC
CTTGCTCTTA AAGTTGGTGA ACTTAGTGAC ATTGTGGATA CCGACAGTGG AGTCCACATT ATTAAGAGGA CGAAATGATT
ACACGGAGTT ATCTCCTATT AACATCTGTA GAAGATATCC AGGATTCTTG TTGAGGTCAA GATCTGCTGA TATAAGTATA
TCAGGTTTCA GACATGGTCG CCCCATGTAT TTGGACGATA TATTGCTTTC ATGACAATTA AAATCGTGTG GTATGCTTGT
AATTTTGAAT AACATTTATA CGTTTTGGAT TCTGTTGCCA TCCGAATGTC CTTATATTAA AGGAGAAACA TGTGATCCTT
CACTAAAGCA TCCCATTTAA CTCCATAAGT CATCCAATAC CTTCCCCACC TTTGGGCAAA ATTCTTATAT CTCACAACTC
TACGTTATTA TGAAATAATG TGTCGGGCAC CCAATTAGCA ATGTGCTTAT TACTGGAAAA TACTTTTACT TGAAAAGAAG
TAAATGTTTA AACTATCA

>Vigan.01G326000.01
ATGTCGTCGT CAAAAGTTGG CGGTGAGATT AGGGCTTCGC ACATACTAAT AAAGCACGAA GGTTCTAGAA GGAAGGCGTC
GTGGAAGGAT CCAGAAGGAC GCATAATCAA GAACACCACA AGAGAAGCTG CGGTTTCTCA GCTCAAGGCC CTTCGCGATG
ACATCGTCTC GGGCAAGGCA ACCTTCGAGG ACGTCGCGTC TCGATTCTCC GATTGCGGCT CCGCCAAGCG CGGCGGCGAT
CTTGGTCCTT TCGGTCGTGG TCAGATGCAG AAGCCTTTTG AAGAGGCAAC CCTTGCTCTT AAAGTTGGTG AACTTAGTGA
CATTGTGGAT ACCGACAGTG GAGTCCACAT TATTAAGAGG ACGAAATGA

>Vigan.01G326000.01
MSSSKVGGEI RASHILIKHE GSRRKASWKD PEGRIIKNTT REAAVSQLKA LRDDIVSGKA TFEDVASRFS DCGSAKRGGD
LGPFGRGQMQ KPFEEATLAL KVGELSDIVD TDSGVHIIKR TK*