GBrowse Details

Vigan.01G321900.01

Basic Information:
Name: Vigan.01G321900.01
Multiple alignment
Variant Information
Position: Chr01:45098190..45102355 (+ strand)
Length: 4166
Functional Information:
Description: Similar to multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4b-like. [XP_004509368.1, Cicer arietinum]
InterPro: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (IPR001678)
RNA (C5-cytosine) methyltransferase (IPR023267)
RNA (C5-cytosine) methyltransferase, subfamily 9 (IPR023269)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:9.43,20.96,5.30,4.28,11.58,7.25,5.63,5.76
Arabidopsis thaliana homolog: AT5G66180.1
Automatic updates:
Name: NM_001255738 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100788419 (LOC100788419), mRNA.
PubMed ID: 28294342 NCBI(pubmed)
25249442 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:45098190..45098236 (+ strand)
Length: 47
Type: five_prime_UTR
Position: Chr01:45098237..45098355 (+ strand)
Length: 119
Type: CDS
Position: Chr01:45098443..45098587 (+ strand)
Length: 145
Type: CDS
Position: Chr01:45098709..45098799 (+ strand)
Length: 91
Type: CDS
Position: Chr01:45099298..45099495 (+ strand)
Length: 198
Type: CDS
Position: Chr01:45099627..45099856 (+ strand)
Length: 230
Type: CDS
Position: Chr01:45099942..45100073 (+ strand)
Length: 132
Type: CDS
Position: Chr01:45100905..45100972 (+ strand)
Length: 68
Type: CDS
Position: Chr01:45101077..45101138 (+ strand)
Length: 62
Type: CDS
Position: Chr01:45101928..45102070 (+ strand)
Length: 143
Type: CDS
Position: Chr01:45102071..45102355 (+ strand)
Length: 285
Type: three_prime_UTR

>Vigan.01G321900.01 class=Sequence position=Chr01:45098190..45102355 (+ strand)
CACAACCCAC CAAAATATTA TGAAGTTGAA CCCGAATTGA GCCGTGGATG GAAGGAGAAA ACGCTGCAAT GGCGCCATTG
CCAGAGGCTT TCCTTCACTT CCTGGAGGCC AATGGGCTCG ATCCTTCCCT TTACACTGCA ATCGATTCCA CCCCAAGATA
CATTCGGTAA TTCCAATTCC ACCCTTTCTA CACCTCCTTC ATTTTTGCCT TTCAATTTCA CATTTTTTTC CTATTTATAT
CGTGCCTTCG AAGGTTGAAA CCTGGTTGTG AAGCATGCAT TGAAGAGGTT GAAGCAGAGG TAAAGTGCAA CCTCGAAAAA
GTAGAGTGGT TATCGGGCTT TCTCTCTCTT CCACCGCACG TTCAAATTGC TGGCTCTAGG GCATACCGAG AAGGAAAGGT
AACTGATCAA GGAATCTTGA TTTGGCTCTT CATACAACAG TCAAGTAAAT TTTAATGTCA AAATGTAATT TTTGAGAACC
TAAGTTTGTG AGGCTGTTGT TGGATTTCCT CTGAGTCAGA TATATGGAAT TGATGCTGCT TCTGGAGCTG CGGTTATGGC
TTTAGAAGTG TCACCTGGAG ATCATGTCCT AGACCTATGT GCTGCTCCTG GTAGATGTTT CTTTCTTTAC TTGCTTATGT
TTATAAGTCT CAAATATAAG CAAATGTTAA CTGTTTTTAC GATTATCAAA ATACCCTTCA TTCAATGGAG GTTTTGTTGT
GTCAATGACT CTGTTGTTGT GTTTTTGATA TCAAAGTTCC AAGAAAGTTT GATGCGGGTA AAAAAGTTTG GTTTTTAAAT
GAGATTGATA CAATTGAAGG ATGCTATCGA TCTTTCTTAA TTAGCATGAG TTTATTTCTT TTATATGAGA CTAGAGGGAG
TATTCTCTTC CCGTACTGTT GCAAAAATGC ATGATTTTCA GATTAAGATT GCTTTATTTC GGTAAGAAAA TGAATGAATG
ACTGTGTTTC AGTGATGCTT TGACGTGCTT TTTCCTTTGC AGGATTTTGT TTTTAGTTAA AAAATCAACA TTGACTGTAA
TTTATCAGTT TACCAGAGAA ACGATTCAAT ATTGATCATA ACTGTCTTTG TAACAATTTT ATTTTCAGGT GCTAAACTTT
GTATGATATT GGACCTTCTT GGTGATTCGG GCTCTGTGAC AGGAGTAGAT GCTGCAAGGC ATCGTTTGGC CGCTTGTAGG
ACAATGCTGC AAAAATATAC GCTTGGTGAT CAATGCCGGC TTTTTGTTGC TGATGGAACA TCATTTTCAG TTATTCCTAC
CAGATCCCGT TCTGACTGTG AATCATGTAA TTGAAGTATA GTTGTTATAG AGATGGTTCA TCCTGGAATG CAATACCGGG
AATTTAAATT TATATTATAT TTATTATTCA GTGTTGCTTG TTTTTGAAAT GTTTTCTTTC TATCAAGTAT CAAACAGGTG
AGTCTGGATC GGAAGAAAGA GTGGATGTGT TCAAGGAGTG GACATCTAGA AGACCATGGA AAGAAAGGAA AAGAGCTGGC
AAAAGTGGTT CTCCACAATT GGTGTCTAGC TCTCAGCCTC CTGAACTCAT TTATTATGGA CATCGTTCTG GCGTTGTTGG
TCTTACTAAA GGAGAATTAT TTAAGACTTT ATCTGACGAT GAGATTGCAA ACAAGGGCTA TGACAAGGTA ACATATACGT
CATTTTGAGT TTATCTTGCA TAATTCTTTG CTTTCAGCAA CCCTGAATAT TTTATGATCT GTTGGAATGC AGGTCCTTGT
AGATGCAGAG TGCACTCATG ATGGTTCAGT TAAACATATT CAAAAGTTTG AACATTGGGG CTGGAGAACG CTTCAACGCC
GTGTATTAGA TGCTGAGAGG ACTGATGACT TACATGCTCT TCAGGCAAAT GAGCCATTAA TACATATTCT CTACTGTAGA
ATATTTTACT AGAATAATCA TTCATTTCTT TCTCTCTCAC ACATATTGTA ACACACTCCC ATCCCATCTT AGAGTTAGAA
CAGATTGGCT ATTGATGACA TGGTGCAGGA TCATTTACTG TGTTAGTGTC AGGCATTAGC TTTGAATGTT TTCCCTTTCT
GATAGAATGT CTAAGGGGTA TTGGCACACT CATGATCAAC TGAGACACTC TTTGGAGTAT GCTCTACGTG TAAGGCCTAA
AACATTTTTG AAAATCTCAG TGCTGAGGTG ATTAATTGTG GGTATATAAC TAAATTGTTG AAGAGTTTGA GTGATTAATA
TGATTAAACT AGCTAACTCT GCAATGTTAC CTTTAGACCT TATGGAGAAA AGTAGAGAAT AAGAGATAAC AAGGAATGTC
TACTTACACA ATAACTAACA AAGTTGGAAG AAAGCCTTCA TTAAGAAGGC CTACCAATTA TGATCTCATT ATGTTACTCC
ATAAACATTG TTTGTCGAGG ACTGTATGAG CATCAAATCA TCAAGGCAAA TTATAACAAG AGTGTACGGA TTTTATTTAA
GTCTGAACTT GTAAATAGGA CATGTTTCAT TTTTAGTAAT GTGATAATAA ACTAGTAAGA TTTCAGTTTC TTGTGCACAA
AGTTAATTTT TTTTGCCATA TTTAACCCCA AAGTATGCAA AGAAGATATT GTAGATTGTT TCTATTGCCT TTTTTGGCAT
AATTCAAGGC ATGAATGCCT TTAGTCTTAG ATTTCACCTT AATTTAACGA ACATACCTTT TGTGTCTGGC TGCAGCTTAA
TCTTCTCACC AATGGTTTCA GACTGCTAAA AGTGGGAGGA TCCCTTGTCT ACAGCACTTG CAGGTAACCT GATTACTTTG
TAACTTCTTC GGCTCTTCTG ATTCAGTCAG CACAAATGTT CCCTATCATT TGCCAATTTT ACTCTGACAA AATACTTTGT
CGATTAGCTT AACTGTTGCT CAGAATGAAG ATGTGGTGGA ACAATTCTTG AAGGAAAATA GAGCTGCAGG TATGCTCTTC
ACCCTTCAAA TTATTTCGGG TTGGTGAAAA CTTTGTCTGT ATTTTACGAG TACTTCTACT GGTCCATGTT TATTATTTCG
TGTTATCCAT TTTTTCATCT AATCATATCC ATTTCAGTAA TATGGTTAGC TTTTGTACTA TGCTTGTTTC TTATCAAATG
TTGTGTGCTT CTCTTGTAGA CGTTCCCCAT TCTTAGATGC GTAAACATAT TGCCTCTATC CTGAAGCCTT TAAACCCTCT
TTCACCCAAT CTGCTTCTTT TGTGGTGGGA AAAAGTTCTG CTTGAATGTT GTCATAGTTT TACAAAATTA TCAATTGGTC
TGCTTGATCT TTTGCGATAT ATTTCTTATT TCGGTGGACA TAGTTAACTT GCAAAAGTTA GGATGTTTCT GGATATCAGA
AATATTTTCT ATATTCATTT TTATATTATT TATGACAAGC ATGTAGTATT ATTTATATAC TGTATTTATT GTTTTTAAAA
GTTTGTGCAA GAAATGTGAG GCAATGAAAT GTTGTTTTTA TTTTGTATCA TACAAGCAAA GGGGGCAATA AAAATGCTGG
CATTTTTGTA ATTTTTAATG AAACTTGAAA TGGATGCAAA AAAACAAATT TACTAGTCAA ACAGAGTCTA ACCTGTTTAA
TGGGATGAGT AAGCGTACGC TTACTTTGCT GTAGTGATAT TACTCCTTGG ATCATATATT CACAGTATTT GCTTCATGTT
GTGGCAGTTG AGTTATTTGT TCCTCTCTAT GTTTTTGCAT TCTTATTTCA ATCTACAGAG CTGACAGAGA TAGATGCTGC
CAGAAATTGG CCTTGCAAGG GTGGATGCAT ACCAAAAACA TGGCGATTTG ACCCTTTGAC ATCACGAACC AGTGGCCTCT
TTATAGCGAA GTTCACAAAA TTAGTCATTT CAGATTTTTA AGTTAGAAAA TGTTCTTTTT AAATGCCTGA TAACTTTAGG
TGTTAAAGGT TTCCTTACAA ATAGTTCCCC AATGGAAAGA AATATGAATT AGTAACTATA ATGTTTTGAC ATGCAAAAGA
TTTGTTATCA AAATCAATTT GTTTCCATTT TAGACATCTT AAATAACATA CGGGTATCGG TATACTTTCT TTGAGCACTT
AGAGTAGTTT ATCTGTAATA TTAACAACAT AATGTACTTG CACTTAGCCT ACTTATCTTG TTCATTTCAT GTATAATGGA
AAATCG

>Vigan.01G321900.01
CACAACCCAC CAAAATATTA TGAAGTTGAA CCCGAATTGA GCCGTGGATG GAAGGAGAAA ACGCTGCAAT GGCGCCATTG
CCAGAGGCTT TCCTTCACTT CCTGGAGGCC AATGGGCTCG ATCCTTCCCT TTACACTGCA ATCGATTCCA CCCCAAGATA
CATTCGGTTG AAACCTGGTT GTGAAGCATG CATTGAAGAG GTTGAAGCAG AGGTAAAGTG CAACCTCGAA AAAGTAGAGT
GGTTATCGGG CTTTCTCTCT CTTCCACCGC ACGTTCAAAT TGCTGGCTCT AGGGCATACC GAGAAGGAAA GATATATGGA
ATTGATGCTG CTTCTGGAGC TGCGGTTATG GCTTTAGAAG TGTCACCTGG AGATCATGTC CTAGACCTAT GTGCTGCTCC
TGGTGCTAAA CTTTGTATGA TATTGGACCT TCTTGGTGAT TCGGGCTCTG TGACAGGAGT AGATGCTGCA AGGCATCGTT
TGGCCGCTTG TAGGACAATG CTGCAAAAAT ATACGCTTGG TGATCAATGC CGGCTTTTTG TTGCTGATGG AACATCATTT
TCAGTTATTC CTACCAGATC CCGTTCTGAC TGTGAATCAT GTGAGTCTGG ATCGGAAGAA AGAGTGGATG TGTTCAAGGA
GTGGACATCT AGAAGACCAT GGAAAGAAAG GAAAAGAGCT GGCAAAAGTG GTTCTCCACA ATTGGTGTCT AGCTCTCAGC
CTCCTGAACT CATTTATTAT GGACATCGTT CTGGCGTTGT TGGTCTTACT AAAGGAGAAT TATTTAAGAC TTTATCTGAC
GATGAGATTG CAAACAAGGG CTATGACAAG GTCCTTGTAG ATGCAGAGTG CACTCATGAT GGTTCAGTTA AACATATTCA
AAAGTTTGAA CATTGGGGCT GGAGAACGCT TCAACGCCGT GTATTAGATG CTGAGAGGAC TGATGACTTA CATGCTCTTC
AGCTTAATCT TCTCACCAAT GGTTTCAGAC TGCTAAAAGT GGGAGGATCC CTTGTCTACA GCACTTGCAG CTTAACTGTT
GCTCAGAATG AAGATGTGGT GGAACAATTC TTGAAGGAAA ATAGAGCTGC AGAGCTGACA GAGATAGATG CTGCCAGAAA
TTGGCCTTGC AAGGGTGGAT GCATACCAAA AACATGGCGA TTTGACCCTT TGACATCACG AACCAGTGGC CTCTTTATAG
CGAAGTTCAC AAAATTAGTC ATTTCAGATT TTTAAGTTAG AAAATGTTCT TTTTAAATGC CTGATAACTT TAGGTGTTAA
AGGTTTCCTT ACAAATAGTT CCCCAATGGA AAGAAATATG AATTAGTAAC TATAATGTTT TGACATGCAA AAGATTTGTT
ATCAAAATCA ATTTGTTTCC ATTTTAGACA TCTTAAATAA CATACGGGTA TCGGTATACT TTCTTTGAGC ACTTAGAGTA
GTTTATCTGT AATATTAACA ACATAATGTA CTTGCACTTA GCCTACTTAT CTTGTTCATT TCATGTATAA TGGAAAATCG

>Vigan.01G321900.01
ATGGAAGGAG AAAACGCTGC AATGGCGCCA TTGCCAGAGG CTTTCCTTCA CTTCCTGGAG GCCAATGGGC TCGATCCTTC
CCTTTACACT GCAATCGATT CCACCCCAAG ATACATTCGG TTGAAACCTG GTTGTGAAGC ATGCATTGAA GAGGTTGAAG
CAGAGGTAAA GTGCAACCTC GAAAAAGTAG AGTGGTTATC GGGCTTTCTC TCTCTTCCAC CGCACGTTCA AATTGCTGGC
TCTAGGGCAT ACCGAGAAGG AAAGATATAT GGAATTGATG CTGCTTCTGG AGCTGCGGTT ATGGCTTTAG AAGTGTCACC
TGGAGATCAT GTCCTAGACC TATGTGCTGC TCCTGGTGCT AAACTTTGTA TGATATTGGA CCTTCTTGGT GATTCGGGCT
CTGTGACAGG AGTAGATGCT GCAAGGCATC GTTTGGCCGC TTGTAGGACA ATGCTGCAAA AATATACGCT TGGTGATCAA
TGCCGGCTTT TTGTTGCTGA TGGAACATCA TTTTCAGTTA TTCCTACCAG ATCCCGTTCT GACTGTGAAT CATGTGAGTC
TGGATCGGAA GAAAGAGTGG ATGTGTTCAA GGAGTGGACA TCTAGAAGAC CATGGAAAGA AAGGAAAAGA GCTGGCAAAA
GTGGTTCTCC ACAATTGGTG TCTAGCTCTC AGCCTCCTGA ACTCATTTAT TATGGACATC GTTCTGGCGT TGTTGGTCTT
ACTAAAGGAG AATTATTTAA GACTTTATCT GACGATGAGA TTGCAAACAA GGGCTATGAC AAGGTCCTTG TAGATGCAGA
GTGCACTCAT GATGGTTCAG TTAAACATAT TCAAAAGTTT GAACATTGGG GCTGGAGAAC GCTTCAACGC CGTGTATTAG
ATGCTGAGAG GACTGATGAC TTACATGCTC TTCAGCTTAA TCTTCTCACC AATGGTTTCA GACTGCTAAA AGTGGGAGGA
TCCCTTGTCT ACAGCACTTG CAGCTTAACT GTTGCTCAGA ATGAAGATGT GGTGGAACAA TTCTTGAAGG AAAATAGAGC
TGCAGAGCTG ACAGAGATAG ATGCTGCCAG AAATTGGCCT TGCAAGGGTG GATGCATACC AAAAACATGG CGATTTGACC
CTTTGACATC ACGAACCAGT GGCCTCTTTA TAGCGAAGTT CACAAAATTA GTCATTTCAG ATTTTTAA

>Vigan.01G321900.01
MEGENAAMAP LPEAFLHFLE ANGLDPSLYT AIDSTPRYIR LKPGCEACIE EVEAEVKCNL EKVEWLSGFL SLPPHVQIAG
SRAYREGKIY GIDAASGAAV MALEVSPGDH VLDLCAAPGA KLCMILDLLG DSGSVTGVDA ARHRLAACRT MLQKYTLGDQ
CRLFVADGTS FSVIPTRSRS DCESCESGSE ERVDVFKEWT SRRPWKERKR AGKSGSPQLV SSSQPPELIY YGHRSGVVGL
TKGELFKTLS DDEIANKGYD KVLVDAECTH DGSVKHIQKF EHWGWRTLQR RVLDAERTDD LHALQLNLLT NGFRLLKVGG
SLVYSTCSLT VAQNEDVVEQ FLKENRAAEL TEIDAARNWP CKGGCIPKTW RFDPLTSRTS GLFIAKFTKL VISDF*