GBrowse Details

Vigan.01G320300.01

Basic Information:
Name: Vigan.01G320300.01
Multiple alignment
Variant Information
Position: Chr01:44959820..44961566 (- strand)
Length: 1747
Functional Information:
Description: Similar to Uncharacterized protein. [C6SZH2, Glycine max]
GO: Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511)
InterPro: SKP1 component (IPR001232)
BTB/POZ fold (IPR011333)
SKP1 component, dimerisation (IPR016072)
SKP1 component, POZ domain (IPR016073)
E3 ubiquitin ligase, SCF complex, Skp subunit (IPR016897)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:521.01,245.64,185.82,263.28,253.93,331.95,185.35,198.44
Arabidopsis thaliana homolog: AT1G75950.1
Automatic updates:
Name: NM_001248420 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306458 (LOC100306458), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254123 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max SKP1-like protein 1A-like (LOC100798104), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:44959820..44960163 (- strand)
Length: 344
Type: three_prime_UTR
Position: Chr01:44960164..44960337 (- strand)
Length: 174
Type: CDS
Position: Chr01:44961208..44961501 (- strand)
Length: 294
Type: CDS
Position: Chr01:44961502..44961566 (- strand)
Length: 65
Type: five_prime_UTR

>Vigan.01G320300.01 class=Sequence position=Chr01:44959820..44961566 (- strand)
GTTTGCTTTA GAAATAGAAT CGCACGGAAA AGAGAGAAAA AGGGATTAGG GTTAGGGATT TGTATATGGC ATCAACAAAG
AAGATCACGC TGAAGAGTTC GGACGGTGAA GCGTTCGAAG TGGATGAGAT TGTGGCTCTG GAGTCGCAGA CGATAAAGCA
TATGATAGAG GATGATTGTG CCGACAGCGG AATTCCTCTT CCCAATGTCA CAAGCAAGAT CCTTGCAAAG GTAATCGAGT
ACTGCAAGAA GCACGTTGAG GCCAATAGTG CTGATGAAAA GCCTACTGAG GATGAGCTCA AGGCATGGGA TGCTGATTTC
GTCAAGGTTG ATCAGGCCAC GCTCTTCGAT CTCATTCTGG TTCGTTCATT TATGATTTCA TTATGGTTGT TTTTGTGCGG
AGGTTAGGGC TTTTTGCTAT TGAGAGTTTC TATTTTTGTT TGGATTTCTG GATTTTTCAA TTGATTTATT GTGGATTGGC
ATATTGTATA ATTGTTTACT TCAAATTTGG GTTTTTTTTT ATTGTTGTTT CTTTATTTAG ATGATGATGT CGATGATGTG
GTGCAACCTT ATAAATACAA ACAAGTTTTA AACTGGATTT GCAGTTTCTT AGAATACTTT AGTTCTATTG TTTGCTGCAA
TCTTACCCTG TAAAGCTCAA AACCCTGTAA TTTTGTAAGT TGTGATGTCG GGGGACTTAC GTTGTATCCA TGTTCTGTTT
TGGATCTTGA TTTTTTTGTT CATTTCATAT ACTAAGGCAT CTCCAACGAA GGAGTTATAA CCAAAGTCTT TTAAGATAAA
GAATAGTCTT AGATAGACCT TGTGTTTTTA AGTAAGCCCT TATTTATAGG ATTAAAAATT GTTTTCAATT TTATAAGGAT
GTAATAGTTT ATGAATGATT TAATTGTTAT TGTCTTTTTA ACAAAACATC ACAACCTTAC ATAAAATGAA AAATTATTGT
AATTAATTTG TTGTAAATAA CAATAATGGC ATAAGGATTA TAACTCTGTT AACTCTCTTG TAGAACTGTG CATTAGATGT
ATTTGATCCG TTATCATCAC ATGATTATGT TATGTATTTA AGTTGTGACA TCTATAATTC TGGTTTTTCT TTTCCTTATT
CTTCATCTTT GTAGATCTTT GTCTTTCTGT ATGTATCTGC ATATTTTTAT CTTTGATTTA CTTTGTTGGT TGGTTATGGT
ACTCTGTTAT TTATTGGTTT TTGTTACAGG CTGCGAATTA CCTGAATATC AAGAACCTTT TGGACCTTAC ATGCCAGACT
GTAGCTGACA TGATAAAGGG GAAGACTCCT GAGGAAATTC GCAAGACTTT TAACATTAAG AATGACTTCA CCCCTGAGGA
AGAAGAAGAA GTTCGTAGGG AAAACCAATG GGCGTTTGAA TGAATTATTT TGAAGCGCCA ATGAAGACAG TGGATGGGAT
TAAGGGATAG TTACTAGTTA TTCTGTTACT GTTTTGTTTA TGTTTTATAT GTTGGCGTAA AAGACTTTTT CTTTGTTAAA
CCTTGTGGGC AATCTTGAAA TTTGTAAGTA ATAGTTGAAT TTGGTAATGC TTTTGAGTCT CTAGTATATG AAGTTTGATC
CATTGTCAAA CTTTGTGTGC CTCTTAATTG TTTTAATCTA TGTTTACTAA ATAATAGGGT TCCTTCTCAT GTCTTGTTCG
TATGATCGAT GCTATGATTT TTTTTATTCC CGAAACGTTA GAATGTTGAA CTGAAAATTG ATTCCCT

>Vigan.01G320300.01
GTTTGCTTTA GAAATAGAAT CGCACGGAAA AGAGAGAAAA AGGGATTAGG GTTAGGGATT TGTATATGGC ATCAACAAAG
AAGATCACGC TGAAGAGTTC GGACGGTGAA GCGTTCGAAG TGGATGAGAT TGTGGCTCTG GAGTCGCAGA CGATAAAGCA
TATGATAGAG GATGATTGTG CCGACAGCGG AATTCCTCTT CCCAATGTCA CAAGCAAGAT CCTTGCAAAG GTAATCGAGT
ACTGCAAGAA GCACGTTGAG GCCAATAGTG CTGATGAAAA GCCTACTGAG GATGAGCTCA AGGCATGGGA TGCTGATTTC
GTCAAGGTTG ATCAGGCCAC GCTCTTCGAT CTCATTCTGG CTGCGAATTA CCTGAATATC AAGAACCTTT TGGACCTTAC
ATGCCAGACT GTAGCTGACA TGATAAAGGG GAAGACTCCT GAGGAAATTC GCAAGACTTT TAACATTAAG AATGACTTCA
CCCCTGAGGA AGAAGAAGAA GTTCGTAGGG AAAACCAATG GGCGTTTGAA TGAATTATTT TGAAGCGCCA ATGAAGACAG
TGGATGGGAT TAAGGGATAG TTACTAGTTA TTCTGTTACT GTTTTGTTTA TGTTTTATAT GTTGGCGTAA AAGACTTTTT
CTTTGTTAAA CCTTGTGGGC AATCTTGAAA TTTGTAAGTA ATAGTTGAAT TTGGTAATGC TTTTGAGTCT CTAGTATATG
AAGTTTGATC CATTGTCAAA CTTTGTGTGC CTCTTAATTG TTTTAATCTA TGTTTACTAA ATAATAGGGT TCCTTCTCAT
GTCTTGTTCG TATGATCGAT GCTATGATTT TTTTTATTCC CGAAACGTTA GAATGTTGAA CTGAAAATTG ATTCCCT

>Vigan.01G320300.01
ATGGCATCAA CAAAGAAGAT CACGCTGAAG AGTTCGGACG GTGAAGCGTT CGAAGTGGAT GAGATTGTGG CTCTGGAGTC
GCAGACGATA AAGCATATGA TAGAGGATGA TTGTGCCGAC AGCGGAATTC CTCTTCCCAA TGTCACAAGC AAGATCCTTG
CAAAGGTAAT CGAGTACTGC AAGAAGCACG TTGAGGCCAA TAGTGCTGAT GAAAAGCCTA CTGAGGATGA GCTCAAGGCA
TGGGATGCTG ATTTCGTCAA GGTTGATCAG GCCACGCTCT TCGATCTCAT TCTGGCTGCG AATTACCTGA ATATCAAGAA
CCTTTTGGAC CTTACATGCC AGACTGTAGC TGACATGATA AAGGGGAAGA CTCCTGAGGA AATTCGCAAG ACTTTTAACA
TTAAGAATGA CTTCACCCCT GAGGAAGAAG AAGAAGTTCG TAGGGAAAAC CAATGGGCGT TTGAATGA

>Vigan.01G320300.01
MASTKKITLK SSDGEAFEVD EIVALESQTI KHMIEDDCAD SGIPLPNVTS KILAKVIEYC KKHVEANSAD EKPTEDELKA
WDADFVKVDQ ATLFDLILAA NYLNIKNLLD LTCQTVADMI KGKTPEEIRK TFNIKNDFTP EEEEEVRREN QWAFE*