GBrowse Details

Vigan.01G319500.01

Basic Information:
Name: Vigan.01G319500.01
Multiple alignment
Variant Information
Position: Chr01:44885392..44889099 (+ strand)
Length: 3708
Functional Information:
Description: Similar to Uncharacterized protein. [K7K6G0, Glycine max]
GO: Biological Process: proteolysis (GO:0006508)
Molecular Function: aspartic-type endopeptidase activity (GO:0004190)
InterPro: Aspartic peptidase (IPR001461)
Aspartic peptidase, active site (IPR001969)
Aspartic peptidase domain (IPR021109)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.08,21.54,9.20,3.19,11.49,8.89,10.71,13.29
Arabidopsis thaliana homolog: AT4G35880.1
Automatic updates:
Name: NM_001371799 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max aspartyl protease family protein (LOC100783577), mRNA.
PubMed ID: 25249442 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:44885392..44885650 (+ strand)
Length: 259
Type: five_prime_UTR
Position: Chr01:44885651..44885943 (+ strand)
Length: 293
Type: CDS
Position: Chr01:44886396..44886543 (+ strand)
Length: 148
Type: CDS
Position: Chr01:44886960..44887195 (+ strand)
Length: 236
Type: CDS
Position: Chr01:44887275..44887499 (+ strand)
Length: 225
Type: CDS
Position: Chr01:44887607..44887742 (+ strand)
Length: 136
Type: CDS
Position: Chr01:44887838..44887911 (+ strand)
Length: 74
Type: CDS
Position: Chr01:44887994..44888093 (+ strand)
Length: 100
Type: CDS
Position: Chr01:44888202..44888259 (+ strand)
Length: 58
Type: CDS
Position: Chr01:44888541..44888612 (+ strand)
Length: 72
Type: CDS
Position: Chr01:44888718..44888947 (+ strand)
Length: 230
Type: CDS
Position: Chr01:44888948..44889099 (+ strand)
Length: 152
Type: three_prime_UTR

>Vigan.01G319500.01 class=Sequence position=Chr01:44885392..44889099 (+ strand)
CAGCGTTAAA AAGTGAAAGC GCGGTGGTGG GACCCACTCA CATGGCTCTG GCATTTTCAT ATAATAAAGC ACTCACTCAC
TCACCCACTC ATACACAGAC ATCATCACAC AGTGACCAAA AACGACACTG TTTCGATCCA AGATCTCAGT CACGTCACAC
CAAGATCTTC TCTTGTTCCG CCACGCCAAA CCCTAGGCTC CACCGAGCAA TGCGGGGTTT ATCGGGAGAG GGTTAGCGTA
GAGGACCCAA ACGAAGAAAA TGCTCGCTTT CGTTTTCGTC GTTGTTGTCA CCTTCATCTC CCTCTGGGAG TTTTGCCAGT
GCCACGACCA CGTTTACACG TTCACCATGC ACCACCGCCA CTCCGAACCC GTCAGAAAGT GGTCCCATGC CGCCGCCGGA
ATCCCCCCTC CTCCCGAAAA GGGCACCGTC GAGTACTACG CTGAGTTGGC CGACCGCGAC CGCTTCCTCC GCGGCCGCAA
ACTCTCTCAG ATCGACGCCG GTCTCGCTTT CTCCGATGGC AACTCCACCT TCCGCATCAG CTCCCTCGGA TTGTACTTTT
CTTCTCTTTG ATTCTTCTAT TGTCATTATT TAAAGGTTTA TTTTTCAAGA TTTTAATTTA AATACAATCT CTTCCTACTC
TTTTCTAACC ATAAAATGAT AGGAAGATTG AATTTTGTTA ATAATTGTGT TGAAACCGTT TTTAATTCGT TGATAATGTG
AGAATTAGTG TACGAATAGT TGAAAATTAG ATTCTTCTTT TAATTTAAAT TGATTAATAA TTTCTTTATA ATAATTTAGT
TATCAGTTTA ATGAAGAGAT AATGGCTTAA GGTTTGAATT TTGAAGGAGA GAAATTACTA TTTAGATGTG AATAATGTTT
GAGTTTGACC ATTCTTTGTT AATGATTTCG GTGATGTTAC GAATTTTTGT CAGTAATGTT TTTTCTTGGA GATTGGTTCC
TGGTTTTCTT TAACTTTTTC TTTTTCTTCT GGAGATTCAT ACAGTTTGCA TTATACGACA GTTGAAATAG GGACACCGGG
AGTCAAGTTC ATGGTGGCGC TTGATACCGG AAGTGACCTG TTCTGGGTAC CTTGTGATTG CACAAGATGT GCTGCTACTG
ATAGCCCAGC CTTTGCTTCG GCCTTTGCTT CGGTATGTTT TATTTTCCTT CTTTTTTTGG TGACTGAACT GAAGTTTTTC
CTATAGTATA TTGTTGTTGA TTATAGGGGT TTTCTCTAAT TGGCTATAGT TATTTTAAGG GCATGTTGCA AGAAGCGCAC
TTCTTTTAAC ATTGCATTGA ATAAATGATT TTATTATTAG ATGAAATGTA TCTAGGTCCC ATTCAATTAC CTGGGCCACA
CTGTATTTAG TGAGGTTCTC ATGTGATCCA CCCCAGTAAA TGACATTTCT GGCTTTCTTT TTCCCCCTTT TATTCCTCGA
GTGAAAAACA TTTTTAACTT TAAGTGCTAG CTTTCTAATA TGTGGAAGAT GGTTCTTACG TTCTAGATAT GCAAGTCTTG
TGTCTTGTCG CCTGCTTTGT TTCTCAATTA AAAACGTTGT TTTTGCAGGA TTTTGACCTT CAAATATACA ATCCTAATGG
ATCTTCAACT AGCAAGAAGG TTACTTGTAA CAACAGTCTG TGCATGCACC GCAGTCAATG CCCCGGGACA TTCAGCAACT
GCCCCTACAT GGTCTCTTAT GTCTCTGCTG AAACGTCTAC ATCAGGAATA CTAGTGGAAG ACGTTCTGCA TTTGACAAAA
GATGATAATC ACCATGACCT TGTTGAGGCA AATGTCATAT TTGGGTCAGT TTCCTTCGTT GTTAAATTAC CAAAACTAAT
CAATGTTACA CTTATCTGAG TAATTTTAAT TTATGTGTTG CAGATGCGGA CAAATTCAGA GTGGATCGTT CTTAGATGTT
GCTGCTCCCA ACGGTTTGTT TGGGCTAGGT ATGGAGAAAA TATCAGTTCC TAGCATGTTA TCTAGAGAAG GATTTACAGC
AGATTCATTC TCCATGTGTT TTGGGAGTGA TGGCATTGGA AGGATAAGTT TTGGGGACAA GGGAAGTTTT GATCAAGACG
AGACTCCGTT TAATCTGAAT CCATCACAGT AAGTGGTAAT TCCCTGTTAC TTGCCTCCGA TTGTATGAAA TTAAAGTAAC
ATTAATTGAA TGCAAAGATT GCTTACTTCT CCTATGCTTG GATACATCTT TGCAGCCCTA CCTATAACGT CACAGTCACT
CAAGTCCGTG TAGGAACAAC TCTAATTGAT GTGGAATTCA CAGCTCTTTT TGATTCTGGG ACCTCTTTCA CATATTTGGT
TGATCCAACT TATACGAGAC TTACTGAGAG TGTAAGCACT TGAAGTACTA AAATGGGATA AAATATCCTT ACATTCAGCT
AGATGTTTCA TCGTGGCCAA AACTTACCAA AGTTTTTATA TTGCAGTTTC ATTCCCAAGT ACATGACAGG CGGCGGCCAT
CAGATTCAAG AATCCCTTTT GAATATTGCT ATGACATGAG GTCATAAAAC TATTGGAATA TTATTTAATA TTATTAATTG
TTTTTCTTTC AAGTTCTAAG TATTCTTTCT TATGATGGAC AGTCCTGATG CAAACACTAG CCTGATTCCT AGTGTAAGTT
TAACTATGGG AGGTGGAAGC CATTTTGCTG TTTATGATCC AATAATTATT ATCTCTACTC AGGTGTTACT TCCTGCTGGA
TTATTCTTCA AAATAAGTAT CCAACAATTG TGTTAACTTT GAGGATATAC GTATAACTAA CATGATGTTC CTACCCTTGC
CATTTTACAG AGCGAACTTG TATATTGTCT AGCAGTTGTC AAAAGTTCCG AACTAAATAT AATTGGACGT AAGTCTCTTC
TACTTTTTGA ATATTTCAGG GCTATATGTT CTTTATGAAC CAGAAGTCAA TTAAATACCC CTGGGGACAA GTATTACTTT
AAATTAAATC AAACTAAATA AGAATGCGTC TTGTTAACAA CTTGGTGTCT TGTGTCAGTG CACCATTTCT TCCTTTTTAT
CTTTCAAAAT TCCAATGATG CATGCATTCT TTATATGTTT ATTTTCCAGT CCATAATTCT AAATGATCAT AATGATTGTT
TACACCTCAG CTTCTGATGT TTATTGCAGA AAACTTCATG ACTGGCTACC GTGTGGTATT TGACCGAGAA AAACTCGTAT
TGGGATGGAA GAAATTTGAT TGTCAGTGTT TATTTTCTTC TTGTGCTTAC AATTCCTCTA TGCTAAATTT TGTAGCCATA
CTTTAATGCC TAAGAAACAA ATGCTCACAC TTTGAGCCCT AAACAGGTTA TGACATTGAG GATCGCAATG CCATCCCTAT
AAGACCACAC TCACACGCAG ATGTACCTCC TGCTGTCGCT GCCGGGCTTG GTCACTACCC TGCCACGGAT TCATCCACAA
AGTCCAAATA CAACTCTCAG AGGTCAACTG CATCATCACC ATCTTCACAT TATAGCCATA CTTCACTTCC AACTTTACTG
GGATTTCTTG TGTTCTGTTT TGTTTATATT CCATAATCAT TCATTTGTAT GGACCAGTGG TAGTTTTTGA TCCTACGTTG
ATATAAGAGT ATGTTGATAT AGTCCAGTCA CGGAGAATTT ATGTATGAAT TTTACTCACG CTATAAAACC ACATTGTAAA
TCAGTAAATG GCATTTGCAT TGTATTTT

>Vigan.01G319500.01
CAGCGTTAAA AAGTGAAAGC GCGGTGGTGG GACCCACTCA CATGGCTCTG GCATTTTCAT ATAATAAAGC ACTCACTCAC
TCACCCACTC ATACACAGAC ATCATCACAC AGTGACCAAA AACGACACTG TTTCGATCCA AGATCTCAGT CACGTCACAC
CAAGATCTTC TCTTGTTCCG CCACGCCAAA CCCTAGGCTC CACCGAGCAA TGCGGGGTTT ATCGGGAGAG GGTTAGCGTA
GAGGACCCAA ACGAAGAAAA TGCTCGCTTT CGTTTTCGTC GTTGTTGTCA CCTTCATCTC CCTCTGGGAG TTTTGCCAGT
GCCACGACCA CGTTTACACG TTCACCATGC ACCACCGCCA CTCCGAACCC GTCAGAAAGT GGTCCCATGC CGCCGCCGGA
ATCCCCCCTC CTCCCGAAAA GGGCACCGTC GAGTACTACG CTGAGTTGGC CGACCGCGAC CGCTTCCTCC GCGGCCGCAA
ACTCTCTCAG ATCGACGCCG GTCTCGCTTT CTCCGATGGC AACTCCACCT TCCGCATCAG CTCCCTCGGA TTTTTGCATT
ATACGACAGT TGAAATAGGG ACACCGGGAG TCAAGTTCAT GGTGGCGCTT GATACCGGAA GTGACCTGTT CTGGGTACCT
TGTGATTGCA CAAGATGTGC TGCTACTGAT AGCCCAGCCT TTGCTTCGGC CTTTGCTTCG GATTTTGACC TTCAAATATA
CAATCCTAAT GGATCTTCAA CTAGCAAGAA GGTTACTTGT AACAACAGTC TGTGCATGCA CCGCAGTCAA TGCCCCGGGA
CATTCAGCAA CTGCCCCTAC ATGGTCTCTT ATGTCTCTGC TGAAACGTCT ACATCAGGAA TACTAGTGGA AGACGTTCTG
CATTTGACAA AAGATGATAA TCACCATGAC CTTGTTGAGG CAAATGTCAT ATTTGGATGC GGACAAATTC AGAGTGGATC
GTTCTTAGAT GTTGCTGCTC CCAACGGTTT GTTTGGGCTA GGTATGGAGA AAATATCAGT TCCTAGCATG TTATCTAGAG
AAGGATTTAC AGCAGATTCA TTCTCCATGT GTTTTGGGAG TGATGGCATT GGAAGGATAA GTTTTGGGGA CAAGGGAAGT
TTTGATCAAG ACGAGACTCC GTTTAATCTG AATCCATCAC ACCCTACCTA TAACGTCACA GTCACTCAAG TCCGTGTAGG
AACAACTCTA ATTGATGTGG AATTCACAGC TCTTTTTGAT TCTGGGACCT CTTTCACATA TTTGGTTGAT CCAACTTATA
CGAGACTTAC TGAGAGTTTT CATTCCCAAG TACATGACAG GCGGCGGCCA TCAGATTCAA GAATCCCTTT TGAATATTGC
TATGACATGA GTCCTGATGC AAACACTAGC CTGATTCCTA GTGTAAGTTT AACTATGGGA GGTGGAAGCC ATTTTGCTGT
TTATGATCCA ATAATTATTA TCTCTACTCA GAGCGAACTT GTATATTGTC TAGCAGTTGT CAAAAGTTCC GAACTAAATA
TAATTGGACA AAACTTCATG ACTGGCTACC GTGTGGTATT TGACCGAGAA AAACTCGTAT TGGGATGGAA GAAATTTGAT
TGTTATGACA TTGAGGATCG CAATGCCATC CCTATAAGAC CACACTCACA CGCAGATGTA CCTCCTGCTG TCGCTGCCGG
GCTTGGTCAC TACCCTGCCA CGGATTCATC CACAAAGTCC AAATACAACT CTCAGAGGTC AACTGCATCA TCACCATCTT
CACATTATAG CCATACTTCA CTTCCAACTT TACTGGGATT TCTTGTGTTC TGTTTTGTTT ATATTCCATA ATCATTCATT
TGTATGGACC AGTGGTAGTT TTTGATCCTA CGTTGATATA AGAGTATGTT GATATAGTCC AGTCACGGAG AATTTATGTA
TGAATTTTAC TCACGCTATA AAACCACATT GTAAATCAGT AAATGGCATT TGCATTGTAT TTT

>Vigan.01G319500.01
ATGCTCGCTT TCGTTTTCGT CGTTGTTGTC ACCTTCATCT CCCTCTGGGA GTTTTGCCAG TGCCACGACC ACGTTTACAC
GTTCACCATG CACCACCGCC ACTCCGAACC CGTCAGAAAG TGGTCCCATG CCGCCGCCGG AATCCCCCCT CCTCCCGAAA
AGGGCACCGT CGAGTACTAC GCTGAGTTGG CCGACCGCGA CCGCTTCCTC CGCGGCCGCA AACTCTCTCA GATCGACGCC
GGTCTCGCTT TCTCCGATGG CAACTCCACC TTCCGCATCA GCTCCCTCGG ATTTTTGCAT TATACGACAG TTGAAATAGG
GACACCGGGA GTCAAGTTCA TGGTGGCGCT TGATACCGGA AGTGACCTGT TCTGGGTACC TTGTGATTGC ACAAGATGTG
CTGCTACTGA TAGCCCAGCC TTTGCTTCGG CCTTTGCTTC GGATTTTGAC CTTCAAATAT ACAATCCTAA TGGATCTTCA
ACTAGCAAGA AGGTTACTTG TAACAACAGT CTGTGCATGC ACCGCAGTCA ATGCCCCGGG ACATTCAGCA ACTGCCCCTA
CATGGTCTCT TATGTCTCTG CTGAAACGTC TACATCAGGA ATACTAGTGG AAGACGTTCT GCATTTGACA AAAGATGATA
ATCACCATGA CCTTGTTGAG GCAAATGTCA TATTTGGATG CGGACAAATT CAGAGTGGAT CGTTCTTAGA TGTTGCTGCT
CCCAACGGTT TGTTTGGGCT AGGTATGGAG AAAATATCAG TTCCTAGCAT GTTATCTAGA GAAGGATTTA CAGCAGATTC
ATTCTCCATG TGTTTTGGGA GTGATGGCAT TGGAAGGATA AGTTTTGGGG ACAAGGGAAG TTTTGATCAA GACGAGACTC
CGTTTAATCT GAATCCATCA CACCCTACCT ATAACGTCAC AGTCACTCAA GTCCGTGTAG GAACAACTCT AATTGATGTG
GAATTCACAG CTCTTTTTGA TTCTGGGACC TCTTTCACAT ATTTGGTTGA TCCAACTTAT ACGAGACTTA CTGAGAGTTT
TCATTCCCAA GTACATGACA GGCGGCGGCC ATCAGATTCA AGAATCCCTT TTGAATATTG CTATGACATG AGTCCTGATG
CAAACACTAG CCTGATTCCT AGTGTAAGTT TAACTATGGG AGGTGGAAGC CATTTTGCTG TTTATGATCC AATAATTATT
ATCTCTACTC AGAGCGAACT TGTATATTGT CTAGCAGTTG TCAAAAGTTC CGAACTAAAT ATAATTGGAC AAAACTTCAT
GACTGGCTAC CGTGTGGTAT TTGACCGAGA AAAACTCGTA TTGGGATGGA AGAAATTTGA TTGTTATGAC ATTGAGGATC
GCAATGCCAT CCCTATAAGA CCACACTCAC ACGCAGATGT ACCTCCTGCT GTCGCTGCCG GGCTTGGTCA CTACCCTGCC
ACGGATTCAT CCACAAAGTC CAAATACAAC TCTCAGAGGT CAACTGCATC ATCACCATCT TCACATTATA GCCATACTTC
ACTTCCAACT TTACTGGGAT TTCTTGTGTT CTGTTTTGTT TATATTCCAT AA

>Vigan.01G319500.01
MLAFVFVVVV TFISLWEFCQ CHDHVYTFTM HHRHSEPVRK WSHAAAGIPP PPEKGTVEYY AELADRDRFL RGRKLSQIDA
GLAFSDGNST FRISSLGFLH YTTVEIGTPG VKFMVALDTG SDLFWVPCDC TRCAATDSPA FASAFASDFD LQIYNPNGSS
TSKKVTCNNS LCMHRSQCPG TFSNCPYMVS YVSAETSTSG ILVEDVLHLT KDDNHHDLVE ANVIFGCGQI QSGSFLDVAA
PNGLFGLGME KISVPSMLSR EGFTADSFSM CFGSDGIGRI SFGDKGSFDQ DETPFNLNPS HPTYNVTVTQ VRVGTTLIDV
EFTALFDSGT SFTYLVDPTY TRLTESFHSQ VHDRRRPSDS RIPFEYCYDM SPDANTSLIP SVSLTMGGGS HFAVYDPIII
ISTQSELVYC LAVVKSSELN IIGQNFMTGY RVVFDREKLV LGWKKFDCYD IEDRNAIPIR PHSHADVPPA VAAGLGHYPA
TDSSTKSKYN SQRSTASSPS SHYSHTSLPT LLGFLVFCFV YIP*