GBrowse Details

Vigan.01G314300.01

Basic Information:
Name: Vigan.01G314300.01
Multiple alignment
Variant Information
Position: Chr01:44358302..44359955 (- strand)
Length: 1654
Functional Information:
Description: Similar to HMG-1. [P93704, Canavalia gladiata]
InterPro: High mobility group box domain (IPR009071)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:44.11,53.09,86.42,40.63,73.20,68.77,88.49,32.20
Automatic updates:
Name: NM_001248383 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499992 (LOC100499992), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:44358302..44358601 (- strand)
Length: 300
Type: three_prime_UTR
Position: Chr01:44358602..44358625 (- strand)
Length: 24
Type: CDS
Position: Chr01:44358702..44358773 (- strand)
Length: 72
Type: CDS
Position: Chr01:44358855..44358935 (- strand)
Length: 81
Type: CDS
Position: Chr01:44359050..44359094 (- strand)
Length: 45
Type: CDS
Position: Chr01:44359190..44359247 (- strand)
Length: 58
Type: CDS
Position: Chr01:44359357..44359458 (- strand)
Length: 102
Type: CDS
Position: Chr01:44359560..44359600 (- strand)
Length: 41
Type: CDS
Position: Chr01:44359601..44359955 (- strand)
Length: 355
Type: five_prime_UTR

>Vigan.01G314300.01 class=Sequence position=Chr01:44358302..44359955 (- strand)
GTGCACAGTG CTAAAACTAC AAAGCAACCC CTCTCATCTC CAAATTACAC ACACAAAGGA AACACATTGA TTTGAAGGTG
TTGCTGAGAG CGAATGAATT TGTAGCACAC GGATCGTTGA CGTGGCAAAA GATCGTCGAA ATCCCGCGTA AAACCCCAAC
TTCAATTTTT TCGCGATTCG ATTTTCACTT GCGTTTTCTC TACACTGCCC TTCCCCACAA CCCTTCTTAT CCCCTCCCAT
CGCGCCCAAA CCTCACAGCA CAACGTGCAC TCTCACTTTT TCCTTTCTCT CTTGGAAACC CTTACTCTCT TCGCTAATTC
CACACAGAGT CTATCTGTTT TCATCTATTC TTGCCATGCC GAAGGTTAAA GCTGATGCTA AAGCTGCCGA TAACAGGTAT
CTCGTTGTTG ATTATTCCTT GTTTTGCTTG AGATCTGGTT TTTTTAGTCT CGTTTTGGTT TTTTTCCATG GTTTAATATT
TGTTGCTATG CGTTTAGGTT GAAGCGCAAG GGCGCTGGCG CTGGTAGGAA GCAATCAAAG AAAGCTGCTA AGGATCCTAA
TAAGCCGAAA AGACCTCCAA GTGCTTTCTT CGTTTTCATG TGCGGATCTC TTTGAATCTT TTTTATAGAT AATTTTTTAT
TCGGTTTTGA TTTGTAGTGT GTTGGATTTT TTTGGTGACG CCAAACTGAG GTTTTCTGAT TGTTTTAGGT CTGAGTTCAG
AGAGCAGTTC AAGAAGGAAC ATCCAACCAA CAAATCTGTT GCTGTTGTGA GTTTCCTTGT TTTTTGTTTT TTTACTAGAA
GCTGGCTGAT TTTTCCTTGA TTTTTAAATT CTTATATGCA TCTTATTTAA TAATTGTTTA GGTTGGCAAA GCTGGTGGTG
ACAAATGGAA ATCTCTGTCT GACGCGGTGA GTGTTAATTT CTGAAGAGAA TTTTGTTGAT TGTTTGCCTG CAATTTTTGG
GACCCGTTTA ACAATTACGG GAAGTTGTAT CTGACATATT GTGGTGGTTT AATTGTTAAG GAAAAAGCAC CCTTCATTGC
TAGGGCTGAG AAGAAAAAAG AAGAGTATGA GAAGAGTATC TTGGCTTATA ACAAGAAATT GGTAAATGTG TTATCTTATA
TATGCTTGGA TTTATTGTTG TTTTTATTGT ACTCTAATTG ATATTTGATT TTTGATGTTT AGGAAGGAAA AAATTCAGAG
GAAGAAGAGT CTGACAAGTC GAAATCTGAG GTTAACGACG AGGAGGAAGA TGAGGTAAAA TAATTTAATC ATTGGTTATA
ATTTGTGCTA TGATTAGTTA ATTTAATTAT TTGTTTGTTT TCTTTTGTAG GAGGATGACG AAGATGATGA GTGAAATTTG
CTACATGTGA TGAAGCCTGG GAAGATGTGG GGAAAAATAT TTTGAGTAGA TGTTGGGTTT AGTATTTGAT AGGACGGTTC
CCAGCCCATA TCACTTTGAT AATTAGTTTC GGAATTTTTA TTTGTTCTCT TTAGTTTTAG GTTAGTGCAA AATTGATATT
AGGGTCCAGT ATCAAGATTA TGTACTTAAA GTCAATGCTA TGATATGATA CGTTTCCAGT TAATTTTCGA AGAAATTCCA
TTCTGCCTTT TATTTTGTCT TTTTGTTGTC TTTGTTGCGT GTCCTTTCTG TGTT

>Vigan.01G314300.01
GTGCACAGTG CTAAAACTAC AAAGCAACCC CTCTCATCTC CAAATTACAC ACACAAAGGA AACACATTGA TTTGAAGGTG
TTGCTGAGAG CGAATGAATT TGTAGCACAC GGATCGTTGA CGTGGCAAAA GATCGTCGAA ATCCCGCGTA AAACCCCAAC
TTCAATTTTT TCGCGATTCG ATTTTCACTT GCGTTTTCTC TACACTGCCC TTCCCCACAA CCCTTCTTAT CCCCTCCCAT
CGCGCCCAAA CCTCACAGCA CAACGTGCAC TCTCACTTTT TCCTTTCTCT CTTGGAAACC CTTACTCTCT TCGCTAATTC
CACACAGAGT CTATCTGTTT TCATCTATTC TTGCCATGCC GAAGGTTAAA GCTGATGCTA AAGCTGCCGA TAACAGGTTG
AAGCGCAAGG GCGCTGGCGC TGGTAGGAAG CAATCAAAGA AAGCTGCTAA GGATCCTAAT AAGCCGAAAA GACCTCCAAG
TGCTTTCTTC GTTTTCATGT CTGAGTTCAG AGAGCAGTTC AAGAAGGAAC ATCCAACCAA CAAATCTGTT GCTGTTGTTG
GCAAAGCTGG TGGTGACAAA TGGAAATCTC TGTCTGACGC GGAAAAAGCA CCCTTCATTG CTAGGGCTGA GAAGAAAAAA
GAAGAGTATG AGAAGAGTAT CTTGGCTTAT AACAAGAAAT TGGAAGGAAA AAATTCAGAG GAAGAAGAGT CTGACAAGTC
GAAATCTGAG GTTAACGACG AGGAGGAAGA TGAGGAGGAT GACGAAGATG ATGAGTGAAA TTTGCTACAT GTGATGAAGC
CTGGGAAGAT GTGGGGAAAA ATATTTTGAG TAGATGTTGG GTTTAGTATT TGATAGGACG GTTCCCAGCC CATATCACTT
TGATAATTAG TTTCGGAATT TTTATTTGTT CTCTTTAGTT TTAGGTTAGT GCAAAATTGA TATTAGGGTC CAGTATCAAG
ATTATGTACT TAAAGTCAAT GCTATGATAT GATACGTTTC CAGTTAATTT TCGAAGAAAT TCCATTCTGC CTTTTATTTT
GTCTTTTTGT TGTCTTTGTT GCGTGTCCTT TCTGTGTT

>Vigan.01G314300.01
ATGCCGAAGG TTAAAGCTGA TGCTAAAGCT GCCGATAACA GGTTGAAGCG CAAGGGCGCT GGCGCTGGTA GGAAGCAATC
AAAGAAAGCT GCTAAGGATC CTAATAAGCC GAAAAGACCT CCAAGTGCTT TCTTCGTTTT CATGTCTGAG TTCAGAGAGC
AGTTCAAGAA GGAACATCCA ACCAACAAAT CTGTTGCTGT TGTTGGCAAA GCTGGTGGTG ACAAATGGAA ATCTCTGTCT
GACGCGGAAA AAGCACCCTT CATTGCTAGG GCTGAGAAGA AAAAAGAAGA GTATGAGAAG AGTATCTTGG CTTATAACAA
GAAATTGGAA GGAAAAAATT CAGAGGAAGA AGAGTCTGAC AAGTCGAAAT CTGAGGTTAA CGACGAGGAG GAAGATGAGG
AGGATGACGA AGATGATGAG TGA

>Vigan.01G314300.01
MPKVKADAKA ADNRLKRKGA GAGRKQSKKA AKDPNKPKRP PSAFFVFMSE FREQFKKEHP TNKSVAVVGK AGGDKWKSLS
DAEKAPFIAR AEKKKEEYEK SILAYNKKLE GKNSEEEESD KSKSEVNDEE EDEEDDEDDE *