GBrowse Details

Vigan.01G308100.01

Basic Information:
Name: Vigan.01G308100.01
Multiple alignment
Variant Information
Position: Chr01:43661864..43664949 (- strand)
Length: 3086
Functional Information:
Description: Similar to uncharacterized LOC101208147. [XP_004170368.1, Cucumis sativus]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:740.43,228.27,48.59,51.21,238.37,72.77,63.46,50.21
Arabidopsis thaliana homolog: AT5G11680.1
Automatic updates:
Name: NM_001250601 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500660 (LOC100500660), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:43661864..43662094 (- strand)
Length: 231
Type: three_prime_UTR
Position: Chr01:43662095..43662203 (- strand)
Length: 109
Type: CDS
Position: Chr01:43662318..43662529 (- strand)
Length: 212
Type: CDS
Position: Chr01:43662624..43662695 (- strand)
Length: 72
Type: CDS
Position: Chr01:43664148..43664259 (- strand)
Length: 112
Type: CDS
Position: Chr01:43664618..43664733 (- strand)
Length: 116
Type: CDS
Position: Chr01:43664734..43664949 (- strand)
Length: 216
Type: five_prime_UTR

>Vigan.01G308100.01 class=Sequence position=Chr01:43661864..43664949 (- strand)
CTTATCTACC TTATCATTTA AGTTTTGTAT TTTATTTTTA AAATATTACT GAAAATAAAA TGAATAAATA ATTTACATAT
TGTATATAAA GAACATCCAG AGGGCACAGG TAAAATCTGG AAAGACCCGC TTGCAGGTTC ATCAATTATA GAGAAACGAA
GGGGAAAGAG AGGGAGAGAT AATTGAAGAT TGAAACTTGG ATCTGTGAGA GAGAAGATGG CTTTGAATCC TCAACTCTTT
CCTAATGGAA TGCCCGTTCC TTTCGTCAAC GAGATGTTTG TGCTGGCCAG AGACGGTGTC GAATTCGATA TCGATAAGAT
TCCTGCCTCT GGGTTAGTTA CTCACCGTTT CTTCGATTTT CCATTTGTTT ATTTATATAT TTCTTCGCTT TCGAATTGTT
TCTTCATTCA TTTTTTTTGG CAAAGGAATA TTTGGGGATT GTCGGTTAAT TCCAAGATAG CGGAAAAGAA AAATTAGAGC
GGCAATTGTA TGATTATAGG AGATTGATAT TTCTTCTTTT TATGCTAATA TGTGTTAGGT CAGGTTAGGA CTCTGCTAAC
AGGCTATTTG GAACATATGA AATTATTTGC TAATTTTGTT TTGTAGGTGA AAGACCTTCA GGTCCATGTG AAATGTGTTT
ATTATTTTTT GTGGTTTTTG TGTTTGATAT AATTGTTTTT TTTTTTTCAG AAGTCATGGG GGTCATGTCA AAACCAAAGG
AATCGTCTAT TTGTCAAATA TTCGGATGGT CTTCGTTGCT AAAAGTCCAG ATGGGCATTT TACAGCTTTT GATATGCCTT
TGGTATGTGT CACTCCTTAT GCTGTTTCAG ATTACTAATT CTGTGCAGCC TGGTTTTCAT GTTTATTGTT TTTCCTCTTT
TACCAAAAGA GTTTTATCCG TTACATCTTG AATGCCATTG TTGTTATGCT AAGATGATTT AATGGACCAT TTTCTGTTTT
GTTTGTGGAT GACTTTATAG CAATCTTTTT CTAGCAGAAC CACTTCACTG AATAATTGGG TTTATATTTT TTTTGTGGCT
TATGACGTCT GTTATAACTT GTGTGAATTC TGTGATGGTG GAGTTTTAGG CCTGTTGGTT CTCGGGGAAT AGCGCATTAT
CATTGCTTGG GTAGTGCTAA CACGCTGAAA ACTATGAATG TAGATTTTAT TATGTTAGTC TCTCAGATTG GTTGGGACTT
GATATATGAT GTGGTTATAA GTTTAAAAAA TAACTTGATG AGCAAATAAT TGTTATTTCT TAATTTCTTT TTTAAAGTAA
ATGTAGATTA GTATAGGTGA CATGCGAGCA TATTTTAGTA GAGAGAGGAT CAGAGAGAAA CAACTAGAAG AACTGAGACT
TGTTAAAAAG AAAGTTATGC AGTTGAACCA TATATATTCC AGAGACCTCT ACTCTCCCTT TTGTACCCTC ATTTTTATGA
TTGCGCCATT TCCCTGTACA ATTCCCCTTT TATTCTCTGC CCCTATCTAA CCAACGGTTA GCTAATTAAC TAACCAATGT
TAGCTGTCAG TTAAAATATC AGGCCCAAAC CCAATTTGGC CAAGAACTAT GTTCTTGTTC CTTCTTTCCT ATACCTTCTT
AGTTGGAGGG TACTGCCTAT CAAGTTATAT CTTTCCTACT CCTGAATGAC AACGTAATTA TGAAGTTATT AGCTATCTGC
TACGTGTTTT AGTTGTGAGC ATGCGTTTAT TTATGTGTCT TTCTTGCTCC CATTGTATTT TGGATAAAGG GGACTTTTGG
GTGAAGTATT CAGTAAGTTC TTAGTATATG AAGAATTTAT AATAGAAATT TGACCATGAA ACTTGTTGGA ATAAGTTAAA
ATAACTTATC TTTATGGGCT ACATACTTCA GGAAGCATAT TGTTACATTA GTTCTACGAA AGTTCTTTCA AACATCCCTG
AAATACAATG ACTTGAAATT TGAGATTACG CGTTTTATGT CATGGGTTAG CTGCTTGAAG TTGGATTTTA AGTTACTATC
ATGAAATTTG AGTGAGTATC GCCATTGGGT TTAATTGGAA AGGTGATATT CACTTAATGT CGAACTTCAC TAGAGTCAAT
CTTATTTTAA AGGGAGTTAA GATTAGAAAT TTGGGGTAAC ATGTATATAT ATTACTCATC ATTTTATTTT TGTATTTGGT
TTGTAGATTG TCAAAACATA TATATTAATT TAAAACGTGA TGTATGCATG CCATTTGTTC TTAATTGATC CTTAGTTCTT
CATCAATTAT GCAGCTTTAC GTCCATGGAG AAAAATTTAA CCAGCCAATA TTTCACTGCA ACAATCTTTC GGGACATGTT
GAGCCTGTAA GTAAATAGTT ATTTTTTGCT GTACATCTTA CTATTTTATT ACAAATCAAA ATTATGGATC CTAAATCCTG
AACTAATTTA ATTGCAACAG GTTGTCCCTA ATGACCAACA CAGAGCACTT TACTCCACAC ACTCATTTAA GATCATATTC
AAAGAGGGTG GATGTGGAAC CTTCATTCCC CTTTTCTTCA ATTTGATTGC TTCAGTGAGG CAGTATAATC AACACTACAA
TATGCAGGCA CAATCTTATG TGGATCCTTT GCAGGCAGCT CAGACTCCTG TTGATGAGAT GATGAGACAT GCGTAAGTGA
ATGATTATGC TTTAAAATTT TAGTCCAAGT TTAAGTTTGT GTAGAGTGTG CACGGTATGA TTTATAATGT ATAAGCTTTA
ATAATGATGA TTGAAATCAT ATGCAGGTAT GTTGATCCTA ATGATCCGAC GAAAATATTT CTGCAACAAC CCAATTCTGA
TTCTCAGCTT AGGCGTCGAA CATATCAGCC ACAGGCAGAT GGGGGCCATG TCTGAGTCTC AAGTTACACT GCCATCACTC
TTCATCGTAC TGTGTTTATA TGAGCACTGT GTATTAATAT CAAAAATAAA ATAAAAATCA TATGACAGAC TAAGTGTGTG
CTTGGATGTA AAATTTTATA GAATTAATCT TAGATCAACG TGATTTTATA CAATTGATTA TAGCTCGAAT TGATTTGAGG
TGTCATGATT TTTATTTGGA TAATAGATAC TATAAGTGAT TTTCAG

>Vigan.01G308100.01
CTTATCTACC TTATCATTTA AGTTTTGTAT TTTATTTTTA AAATATTACT GAAAATAAAA TGAATAAATA ATTTACATAT
TGTATATAAA GAACATCCAG AGGGCACAGG TAAAATCTGG AAAGACCCGC TTGCAGGTTC ATCAATTATA GAGAAACGAA
GGGGAAAGAG AGGGAGAGAT AATTGAAGAT TGAAACTTGG ATCTGTGAGA GAGAAGATGG CTTTGAATCC TCAACTCTTT
CCTAATGGAA TGCCCGTTCC TTTCGTCAAC GAGATGTTTG TGCTGGCCAG AGACGGTGTC GAATTCGATA TCGATAAGAT
TCCTGCCTCT GGAAGTCATG GGGGTCATGT CAAAACCAAA GGAATCGTCT ATTTGTCAAA TATTCGGATG GTCTTCGTTG
CTAAAAGTCC AGATGGGCAT TTTACAGCTT TTGATATGCC TTTGCTTTAC GTCCATGGAG AAAAATTTAA CCAGCCAATA
TTTCACTGCA ACAATCTTTC GGGACATGTT GAGCCTGTTG TCCCTAATGA CCAACACAGA GCACTTTACT CCACACACTC
ATTTAAGATC ATATTCAAAG AGGGTGGATG TGGAACCTTC ATTCCCCTTT TCTTCAATTT GATTGCTTCA GTGAGGCAGT
ATAATCAACA CTACAATATG CAGGCACAAT CTTATGTGGA TCCTTTGCAG GCAGCTCAGA CTCCTGTTGA TGAGATGATG
AGACATGCGT ATGTTGATCC TAATGATCCG ACGAAAATAT TTCTGCAACA ACCCAATTCT GATTCTCAGC TTAGGCGTCG
AACATATCAG CCACAGGCAG ATGGGGGCCA TGTCTGAGTC TCAAGTTACA CTGCCATCAC TCTTCATCGT ACTGTGTTTA
TATGAGCACT GTGTATTAAT ATCAAAAATA AAATAAAAAT CATATGACAG ACTAAGTGTG TGCTTGGATG TAAAATTTTA
TAGAATTAAT CTTAGATCAA CGTGATTTTA TACAATTGAT TATAGCTCGA ATTGATTTGA GGTGTCATGA TTTTTATTTG
GATAATAGAT ACTATAAGTG ATTTTCAG

>Vigan.01G308100.01
ATGGCTTTGA ATCCTCAACT CTTTCCTAAT GGAATGCCCG TTCCTTTCGT CAACGAGATG TTTGTGCTGG CCAGAGACGG
TGTCGAATTC GATATCGATA AGATTCCTGC CTCTGGAAGT CATGGGGGTC ATGTCAAAAC CAAAGGAATC GTCTATTTGT
CAAATATTCG GATGGTCTTC GTTGCTAAAA GTCCAGATGG GCATTTTACA GCTTTTGATA TGCCTTTGCT TTACGTCCAT
GGAGAAAAAT TTAACCAGCC AATATTTCAC TGCAACAATC TTTCGGGACA TGTTGAGCCT GTTGTCCCTA ATGACCAACA
CAGAGCACTT TACTCCACAC ACTCATTTAA GATCATATTC AAAGAGGGTG GATGTGGAAC CTTCATTCCC CTTTTCTTCA
ATTTGATTGC TTCAGTGAGG CAGTATAATC AACACTACAA TATGCAGGCA CAATCTTATG TGGATCCTTT GCAGGCAGCT
CAGACTCCTG TTGATGAGAT GATGAGACAT GCGTATGTTG ATCCTAATGA TCCGACGAAA ATATTTCTGC AACAACCCAA
TTCTGATTCT CAGCTTAGGC GTCGAACATA TCAGCCACAG GCAGATGGGG GCCATGTCTG A

>Vigan.01G308100.01
MALNPQLFPN GMPVPFVNEM FVLARDGVEF DIDKIPASGS HGGHVKTKGI VYLSNIRMVF VAKSPDGHFT AFDMPLLYVH
GEKFNQPIFH CNNLSGHVEP VVPNDQHRAL YSTHSFKIIF KEGGCGTFIP LFFNLIASVR QYNQHYNMQA QSYVDPLQAA
QTPVDEMMRH AYVDPNDPTK IFLQQPNSDS QLRRRTYQPQ ADGGHV*